DY257572

Overview
NameDY257572
Unique NameDY257572
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length541
Libraries
Library NameType
AbsCFruitcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig6631 contig Csv1_Contig6631:1..541. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
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BLAST of DY257572 vs. ExPASy Swiss-Prot
Match: SYE_ARATH (Glutamyl-tRNA synthetase OS=Arabidopsis thaliana GN=At5g64050 PE=2 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 4.072e-21
Identity = 52/100 (52.00%), Postives = 68/100 (68.00%), Query Frame = 2 
Query:   47 LVAAYXXXXXXXXXXXXXXXWLKCWIGFDNTLKPFVKSVFMPLKVLLTG*LAGPDMGASILLIHKAGTHGIVSPRAEFVTLDERFKMLRQVDWEALKKDQ 346
            L+AAY               W K    F  +LK   KS+FMPL+VLLTG L GP+MG SI+LI+KAG+ GIV P+A FV+++ERFK+LR++DWEAL KD+
Sbjct:  459 LIAAYDSGEIPSALEEGQGAWQKWVKAFGKSLKRKGKSLFMPLRVLLTGKLHGPEMGTSIVLIYKAGSPGIVVPQAGFVSMEERFKILREIDWEALNKDE 558
[Close]
BLAST of DY257572 vs. ExPASy Swiss-Prot
Match: SYE_TOBAC (Glutamyl-tRNA synthetase OS=Nicotiana tabacum PE=2 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 8.490e-19
Identity = 50/101 (49.50%), Postives = 62/101 (61.39%), Query Frame = 2 
Query:   47 LVAAYXXXXXXXXXXXXXXXWLKCWIGFDNTLKPFVKSVFMPLKVLLTG*LAGPDMGASILLIHKAGTHGIVSPRAEFVTLDERFKMLRQVDWEALKKDQP 349
            L+AAY               W K    F   LK   KS+FMPL+VLLTG L GPD+GA+ +L++KAGT G V P+A FVT DERFK+LR+V WE+   D P
Sbjct:  461 LLAAYDSGELSGALAEGQPGWQKWAKNFGKLLKRKGKSLFMPLRVLLTGKLHGPDIGATTVLLYKAGTSGSVVPQAGFVTFDERFKILREVQWESFSTDVP 561
[Close]
BLAST of DY257572 vs. ExPASy Swiss-Prot
Match: SYE_HORVU (Glutamyl-tRNA synthetase OS=Hordeum vulgare PE=2 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 8.490e-19
Identity = 47/100 (47.00%), Postives = 66/100 (66.00%), Query Frame = 2 
Query:   47 LVAAYXXXXXXXXXXXXXXXWLKCWIGFDNTLKPFVKSVFMPLKVLLTG*LAGPDMGASILLIHKAGTHGIVSPRAEFVTLDERFKMLRQVDWEALKKDQ 346
            L++AY               W K    F  T K   KS+FMPL+VLLTG L GP M ++++L+HKAGT G V+P++ FV+LDERFK+L++V+WE+L+K Q
Sbjct:  449 LISAYDSGELDQALAEGHDGWKKWVKSFGKTHKRKGKSLFMPLRVLLTGKLHGPAMDSTVILVHKAGTSGAVAPQSGFVSLDERFKILKEVNWESLQKQQ 548
The following BLAST results are available for this feature:
BLAST of DY257572 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 3
Match NameE-valueIdentityDescription
SYE_ARATH4.072e-2152.00Glutamyl-tRNA synthetase OS=Arabidopsis thaliana G... [more]
SYE_TOBAC8.490e-1949.50Glutamyl-tRNA synthetase OS=Nicotiana tabacum PE=2... [more]
SYE_HORVU8.490e-1947.00Glutamyl-tRNA synthetase OS=Hordeum vulgare PE=2 S... [more]
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Properties
Property NameValue
Genbank descriptionKN0AAK3BA07FM1 AbsCFruit Citrus sinensis cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY257572 ID=DY257572; Name=DY257572; organism=Citrus sinensis; type=EST; length=541bp
GGTCCATTGCCCTTTAAAGATAATCTATCTGAATTTACAAACTCGCCTCG
TAGCTGCGTATGAGGGAGGAGAGCTACTGGTTGGTGTTGAAGAAAGCCTG
GCAGTTTGGCTAAAATGTTGGATTGGTTTTGACAATACACTTAAGCCCTT
CGTGAAATCTGTATTCATGCCCCTAAAGGTGTTGCTAACTGGATAACTCG
CTGGCCCTGATATGGGTGCCAGCATTCTGTTAATCCATAAAGCTGGAACC
CATGGCATTGTTTCTCCCCGGGCTGAATTTGTGACATTGGATGAGAGGTT
TAAAATGCTGAGACAAGTTGATTGGGAAGCATTAAAGAAGGATCAACCTG
CCCTAGAATCTGCTGCTGCTACAGCGAATTGAGAATCCAACAATTTTGAT
CGGGCCATTAAAAGAAACTAGAGATTTTTTTTCTAAAAATTTAATTTGTT
TGCCCTGTTTAACTTTGAGAGACAATTTGTATGACATTAGAAGAAAGGAC
TCGCCTATCGTGCAACAGGGGCACCATACCACTGCTTTTGT
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