DY257570

Overview
NameDY257570
Unique NameDY257570
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length500
Libraries
Library NameType
AbsCFruitcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
DY257570_ssr197 microsatellite DY257570_ssr197:197..211. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig4757 contig Csv1_Contig4757:671..1169. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
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BLAST of DY257570 vs. ExPASy Swiss-Prot
Match: FBW2_ARATH (F-box protein FBW2 OS=Arabidopsis thaliana GN=FBW2 PE=1 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 2.064e-18
Identity = 52/110 (47.27%), Postives = 63/110 (57.27%), Query Frame = 1 
Query:    1 EFLDFRGCWDVKLDDKFMKGNFPNLKVLGPFVMDYYEM-NDWDD-CSDY-SDGSEYLAWEFLAXXXXXXXXXXXXXXXXWDAEGRLEELELRFYDGIEEDAGIYGWPPSP 321
            EFL+ RGCWDV+LD+KF K  FP++KVLGP V+ +Y+M NDW+D CSDY SDGS+YLAWEF                  WD     E   L        D   + WPPSP
Sbjct:  217 EFLELRGCWDVQLDNKFFKEKFPDMKVLGPRVIGFYDMINDWEDCCSDYFSDGSDYLAWEFF-EDGVMGEFYEDEFEHGWDDNFYAENAVL--------DMEPHIWPPSP 317
The following BLAST results are available for this feature:
BLAST of DY257570 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
FBW2_ARATH2.064e-1847.27F-box protein FBW2 OS=Arabidopsis thaliana GN=FBW2... [more]
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Properties
Property NameValue
Genbank descriptionKN0AAK3BA05FM1 AbsCFruit Citrus sinensis cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY257570 ID=DY257570; Name=DY257570; organism=Citrus sinensis; type=EST; length=500bp
GAGTTTTTGGATTTTAGAGGGTGCTGGGATGTGAAACTTGACGACAAGTT
CATGAAAGGGAACTTCCCAAATTTGAAGGTTCTGGGGCCCTTTGTGATGG
ACTACTATGAAATGAATGACTGGGATGATTGCTCGGATTATTCAGATGGA
TCCGAGTATTTGGCCTGGGAATTCCTAGCTGGTGAAATGGGTGACTATGA
TGATGATGATGAAATCTACGAGGGAATGTGGGATGCTGAAGGCAGGCTGG
AAGAGCTTGAGCTAAGGTTCTATGATGGAATCGAAGAGGATGCAGGTATC
TATGGTTGGCCTCCATCACCTTAGGCTCTGTAATTCCTTGTCAACTTTGT
TTCCGTTTCTAGCATCTTTTTCTCGTTGGAGCTTCCTCTTTATGCTGGAG
TTGGTATGTAGTACATGCATATGTTTTAAGTAAAGACTGAACTGTTGTTG
TTTATATCTGTTACTCATAATCTATTCCAAGTGAAATATTCCTTGTAACA
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