EY702494

Overview
NameEY702494
Unique NameEY702494
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length859
Libraries
Library NameType
Sweet orange fruit, development stadium (2 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY702494 vs. ExPASy Swiss-Prot
Match: RGLG2_ARATH (E3 ubiquitin-protein ligase RGLG2 OS=Arabidopsis thaliana GN=RGLG2 PE=1 SV=1)

HSP 1 Score: 339.732 bits (870), Expect = 1.233e-92
Identity = 173/255 (67.84%), Postives = 207/255 (81.18%), Query Frame = 2
Query:   86 YYATPSQSYSGRGPESTRKLERKYSKIDDNYHSLEQVTDALARAGLESSNLIVGIDFTKSNEWTGARSFQRRSLHHIGDDQNPYEQAISIIGKTLSSFDEDNLIPCFGFGDASTHDQEVFSFYPDEKFCNGFEEVLRRYRELVPHLRLAGPTSFAPIIEMAITIVEHSGGQYHVLVIIADGQVTXSVDTEHGAISSQGKETG*SIC*SE*GPLGDYIRLG*EMGPWDLMREIDEYIPARGIG*FSGWKFSQIMPR 850
            Y A PSQSY   G ++ ++LERKYSKI D+Y SLEQVT+ALARAGLESSNLIVGIDFTKSNEWTGARSF R+SLH IG   NPYEQAI+IIG+TL++FDEDNLIPC+GFGDASTHDQ+VFSF  +++FCNGFEEVL RY+E+VP L+LAGPTSFAPII+MA+TIVE SGGQYHVLVIIADGQVT SVDTE+G +S Q ++T  +I  +   PL   + +G   GPWD+MRE D+ IPAR    F    F++IM +
Sbjct:   76 YSAPPSQSY---GSDNKKRLERKYSKISDDYSSLEQVTEALARAGLESSNLIVGIDFTKSNEWTGARSFNRKSLHFIGSSPNPYEQAITIIGRTLAAFDEDNLIPCYGFGDASTHDQDVFSFNSEDRFCNGFEEVLSRYKEIVPQLKLAGPTSFAPIIDMAMTIVEQSGGQYHVLVIIADGQVTRSVDTENGQLSPQEQKTVDAIVQASKLPL-SIVLVGVGDGPWDMMREFDDNIPARAFDNFQFVNFTEIMAK 326          
BLAST of EY702494 vs. ExPASy Swiss-Prot
Match: RGLG1_ARATH (E3 ubiquitin-protein ligase RGLG1 OS=Arabidopsis thaliana GN=RGLG1 PE=1 SV=1)

HSP 1 Score: 328.176 bits (840), Expect = 3.714e-89
Identity = 166/255 (65.10%), Postives = 200/255 (78.43%), Query Frame = 2
Query:   86 YYATPSQSYSGRGPESTRKLERKYSKIDDNYHSLEQVTDALARAGLESSNLIVGIDFTKSNEWTGARSFQRRSLHHIGDDQNPYEQAISIIGKTLSSFDEDNLIPCFGFGDASTHDQEVFSFYPDEKFCNGFEEVLRRYRELVPHLRLAGPTSFAPIIEMAITIVEHSGGQYHVLVIIADGQVTXSVDTEHGAISSQGKETG*SIC*SE*GPLGDYIRLG*EMGPWDLMREIDEYIPARGIG*FSGWKFSQIMPR 850
            Y   PSQS         +K +R+YSKI DNY SL QV++AL RAGLESSNLIVGIDFTKSNEWTGA+SF R+SLHH+ +  NPYEQAI+IIG+TL++FDEDNLIPC+GFGDASTHDQ+VFSFYP+ +FCNGFEEVL RYRE+VP L+LAGPTSFAPIIEMA+T+VE S GQYHVLVIIADGQVT SVDTEHG +S Q ++T  +I  +   PL   + +G   GPWD+M+E D+ IPAR    F    F++IM +
Sbjct:  111 YPPPPSQSQVA----DRKKFDRRYSKISDNYSSLLQVSEALGRAGLESSNLIVGIDFTKSNEWTGAKSFNRKSLHHLSNTPNPYEQAITIIGRTLAAFDEDNLIPCYGFGDASTHDQDVFSFYPEGRFCNGFEEVLARYREIVPQLKLAGPTSFAPIIEMAMTVVEQSSGQYHVLVIIADGQVTRSVDTEHGRLSPQEQKTVDAIVKASTLPL-SIVLVGVGDGPWDMMQEFDDNIPARAFDNFQFVNFTEIMSK 360          
BLAST of EY702494 vs. ExPASy Swiss-Prot
Match: CPNA2_CAEEL (Copine domain-containing protein 2 OS=Caenorhabditis elegans GN=cpna-2 PE=2 SV=3)

HSP 1 Score: 168.703 bits (426), Expect = 3.766e-41
Identity = 97/228 (42.54%), Postives = 132/228 (57.89%), Query Frame = 2
Query:  173 NYHSLEQVTDALARAGLESSNLIVGIDFTKSNEWTGARSFQRRSLHHIGD-DQNPYEQAISIIGKTLSSFDEDNLIPCFGFGDASTHDQEVFSF---YPDEKFCNGFEEVLRRYRELVPHLRLAGPTSFAPIIEMAITIVEHSGGQYHVLVIIADGQVTXSVDTEHGAISSQGKETG*SIC*SE*GPLGDYIRLG*EMGPWDLMREIDEYIPARGIG*FSGWKFSQIM 844
            ++ +L+ +  A+  AGLE SNLI GID+TKSN + G R+F +R LH I   + NPY+Q I I+GKTLSSFD D  IP +GFGD    D  +F+    Y  EK CNGFEEVLR Y E+ P + ++GPT+F P+I+ AI I +     YH+LVI+ADGQVT     +    ++               PL   I +G   GPW++M   D+ IP R    F    F ++M
Sbjct: 7298 HFKTLDDIVKAIKHAGLEYSNLIFGIDYTKSNFYQGERTFDKRPLHTIDPAEMNPYQQVIQIVGKTLSSFDADGQIPAYGFGDEEFTDHGIFNIAERYDLEKDCNGFEEVLRVYNEVTPTIEMSGPTNFVPLIDRAIEICKEK-HSYHILVIVADGQVTNEKINQKAIAAASHY------------PL-SIIMVGVGDGPWNMMGRFDDNIPKRLFDNFHFVDFHKVM 7511          
BLAST of EY702494 vs. ExPASy Swiss-Prot
Match: CPNE3_MOUSE (Copine-3 OS=Mus musculus GN=Cpne3 PE=1 SV=2)

HSP 1 Score: 88.5817 bits (218), Expect = 4.953e-17
Identity = 53/158 (33.54%), Postives = 79/158 (50.00%), Query Frame = 2
Query:  233 NLIVGIDFTKSNEWTGARSFQRRSLHHIGDDQ-NPYEQAISIIGKTLSSFDEDNLIPCFGFGDASTHDQEV-----FSFYPDEKFCNGFEEVLRRYRELVPHLRLAGPTSFAPIIE-----MAITIVEHSGGQYHVLVIIADGQVTXSVDTEHGAISS 673
            N  VG+DFT SN    +      SLH+I  +  N Y  AI  +G  +  +D D + P FGFG       +V      +F P   +CNG + ++  YR  +P +RL GPT+F+PII       A    + +  QY VL+II DG +T   +T    +++
Sbjct:  291 NFTVGVDFTGSNGDPSSPD----SLHYISPNGVNEYLTAIWSVGLVIQDYDADKMFPAFGFGAQVPPQWQVSHEFPMNFNPSNPYCNGIQGIVEAYRTCLPQIRLYGPTNFSPIINHVARFAAAATQQQTASQYFVLLIITDGVITDLDETRQAIVNA 444          
BLAST of EY702494 vs. ExPASy Swiss-Prot
Match: CPNE3_PONAB (Copine-3 OS=Pongo abelii GN=CPNE3 PE=2 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 8.448e-17
Identity = 51/158 (32.28%), Postives = 80/158 (50.63%), Query Frame = 2
Query:  233 NLIVGIDFTKSNEWTGARSFQRRSLHHIGDDQ-NPYEQAISIIGKTLSSFDEDNLIPCFGFGDASTHDQEV-----FSFYPDEKFCNGFEEVLRRYRELVPHLRLAGPTSFAPIIE-----MAITIVEHSGGQYHVLVIIADGQVTXSVDTEHGAISS 673
            N  VG+DFT SN+   +      SLH+I  +  N Y  A+  +G  +  +D D + P FGFG       +V      +F P   +CNG + ++  YR  +P ++L GPT+F+PII       A    + +  QY VL+II DG +T   +T    +++
Sbjct:  291 NFTVGVDFTGSNDDPRSPD----SLHYISPNGVNEYLTALWSVGLVIQDYDADKMFPAFGFGAQIPPQWQVSHEFPMNFNPSNPYCNGIQGIVEAYRSCLPQIKLYGPTNFSPIINHVARFAAAAAQQQTASQYFVLLIITDGVITDLDETRQAIVNA 444          
BLAST of EY702494 vs. ExPASy Swiss-Prot
Match: CPNE2_MOUSE (Copine-2 OS=Mus musculus GN=Cpne2 PE=2 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 1.103e-16
Identity = 50/155 (32.26%), Postives = 76/155 (49.03%), Query Frame = 2
Query:  242 VGIDFTKSNEWTGARSFQRRSLHHIGD-DQNPYEQAISIIGKTLSSFDEDNLIPCFGFGDASTHDQEV-----FSFYPDEKFCNGFEEVLRRYRELVPHLRLAGPTSFAPIIE-----MAITIVEHSGGQYHVLVIIADGQVTXSVDTEHGAISS 673
            VGIDFT SN           SLH+I     N Y  AI  +G+ +  +D D + P  GFG     D +V      +F P   FC+G + + + Y   +PH+R  GPT+F+PI+       A    + +  QY +L+II DG ++   +T H  + +
Sbjct:  310 VGIDFTASN----GNPLDPSSLHYINPMGTNEYLSAIWAVGQIIQDYDSDKMFPALGFGAQLPPDWKVSHEFAINFNPTNPFCSGVDGIAQAYSACLPHIRFYGPTNFSPIVNHVARFAAQATQQQTATQYFILLIITDGVISDMEETRHAVVQA 460          
BLAST of EY702494 vs. ExPASy Swiss-Prot
Match: CPNE2_HUMAN (Copine-2 OS=Homo sapiens GN=CPNE2 PE=1 SV=3)

HSP 1 Score: 87.4261 bits (215), Expect = 1.103e-16
Identity = 50/155 (32.26%), Postives = 76/155 (49.03%), Query Frame = 2
Query:  242 VGIDFTKSNEWTGARSFQRRSLHHIGD-DQNPYEQAISIIGKTLSSFDEDNLIPCFGFGDASTHDQEV-----FSFYPDEKFCNGFEEVLRRYRELVPHLRLAGPTSFAPIIE-----MAITIVEHSGGQYHVLVIIADGQVTXSVDTEHGAISS 673
            VGIDFT SN           SLH+I     N Y  AI  +G+ +  +D D + P  GFG     D +V      +F P   FC+G + + + Y   +PH+R  GPT+F+PI+       A    + +  QY +L+II DG ++   +T H  + +
Sbjct:  310 VGIDFTASN----GNPLDPSSLHYINPMGTNEYLSAIWAVGQIIQDYDSDKMFPALGFGAQLPPDWKVSHEFAINFNPTNPFCSGVDGIAQAYSACLPHIRFYGPTNFSPIVNHVARFAAQATQQRTATQYFILLIITDGVISDMEETRHAVVQA 460          
BLAST of EY702494 vs. ExPASy Swiss-Prot
Match: CPNE3_HUMAN (Copine-3 OS=Homo sapiens GN=CPNE3 PE=1 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 2.458e-16
Identity = 51/158 (32.28%), Postives = 79/158 (50.00%), Query Frame = 2
Query:  233 NLIVGIDFTKSNEWTGARSFQRRSLHHIGDDQ-NPYEQAISIIGKTLSSFDEDNLIPCFGFGDASTHDQEV-----FSFYPDEKFCNGFEEVLRRYRELVPHLRLAGPTSFAPIIE-----MAITIVEHSGGQYHVLVIIADGQVTXSVDTEHGAISS 673
            N  VG+DFT SN    +      SLH+I  +  N Y  A+  +G  +  +D D + P FGFG       +V      +F P   +CNG + ++  YR  +P ++L GPT+F+PII       A    + +  QY VL+II DG +T   +T    +++
Sbjct:  291 NFTVGVDFTGSNGDPRSPD----SLHYISPNGVNEYLTALWSVGLVIQDYDADKMFPAFGFGAQIPPQWQVSHEFPMNFNPSNPYCNGIQGIVEAYRSCLPQIKLYGPTNFSPIINHVARFAAAATQQQTASQYFVLLIITDGVITDLDETRQAIVNA 444          
BLAST of EY702494 vs. ExPASy Swiss-Prot
Match: CPNE1_MOUSE (Copine-1 OS=Mus musculus GN=Cpne1 PE=1 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 3.210e-16
Identity = 52/146 (35.62%), Postives = 74/146 (50.68%), Query Frame = 2
Query:  233 NLIVGIDFTKSNEWTGARSFQRRSLHHIGDDQ-NPYEQAISIIGKTLSSFDEDNLIPCFGFGDASTHDQEV-----FSFYPDEKFCNGFEEVLRRYRELVPHLRLAGPTSFAPIIE-----MAITIVEHSGGQYHVLVIIADGQVT 637
            N  VG+DFT SN    +      SLH++     N Y  A+  +G  +  +D D L P FGFG     D +V      +F P   +C G + ++  YR+ +P +RL GPT+FAPII       A    + S  QY VL+++ DG VT
Sbjct:  284 NFTVGVDFTGSNGDPSSPD----SLHYLSPTGVNEYLTALWSVGSVVQDYDSDKLFPAFGFGAQVPPDWQVSHEFALNFNPSNPYCAGIQGIVDAYRQALPQVRLYGPTNFAPIINHVARFAAQAAQQRSASQYFVLLLLTDGAVT 425          
BLAST of EY702494 vs. ExPASy Swiss-Prot
Match: CPNE1_HUMAN (Copine-1 OS=Homo sapiens GN=CPNE1 PE=1 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 7.152e-16
Identity = 57/201 (28.36%), Postives = 90/201 (44.78%), Query Frame = 2
Query:   98 PSQSYSGRGPESTRKLERKYSKIDDNYHSLEQVTDALARAGLESSNLIVGIDFTKSNEWTGARSFQRRSLHHIGDDQ-NPYEQAISIIGKTLSSFDEDNLIPCFGFGDASTHDQEV-----FSFYPDEKFCNGFEEVLRRYRELVPHLRLAGPTSFAPIIEMAITI---VEHSG--GQYHVLVIIADGQVTXSVDTEHGAI 667
            P +    +  +++  +  K  +++  Y  L+ V            N  VG+DFT SN    +      SLH++     N Y  A+  +G  +  +D D L P FGFG     D +V      +F P   +C G + ++  YR+ +P +RL GPT+FAPII           H G   QY +L+++ DG VT    T    +
Sbjct:  246 PEKQQKKKSYKNSGTIRVKICRVETEYSFLDYVMGGC------QINFTVGVDFTGSNGDPSSPD----SLHYLSPTGVNEYLMALWSVGSVVQDYDSDKLFPAFGFGAQVPPDWQVSHEFALNFNPSNPYCAGIQGIVDAYRQALPQVRLYGPTNFAPIINHVARFAAQAAHQGTASQYFMLLLLTDGAVTDVEATREAVV 436          
The following BLAST results are available for this feature:
BLAST of EY702494 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 27
Match NameE-valueIdentityDescription
RGLG2_ARATH1.233e-9267.84E3 ubiquitin-protein ligase RGLG2 OS=Arabidopsis t... [more]
RGLG1_ARATH3.714e-8965.10E3 ubiquitin-protein ligase RGLG1 OS=Arabidopsis t... [more]
CPNA2_CAEEL3.766e-4142.54Copine domain-containing protein 2 OS=Caenorhabdit... [more]
CPNE3_MOUSE4.953e-1733.54Copine-3 OS=Mus musculus GN=Cpne3 PE=1 SV=2[more]
CPNE3_PONAB8.448e-1732.28Copine-3 OS=Pongo abelii GN=CPNE3 PE=2 SV=1[more]
CPNE2_MOUSE1.103e-1632.26Copine-2 OS=Mus musculus GN=Cpne2 PE=2 SV=1[more]
CPNE2_HUMAN1.103e-1632.26Copine-2 OS=Homo sapiens GN=CPNE2 PE=1 SV=3[more]
CPNE3_HUMAN2.458e-1632.28Copine-3 OS=Homo sapiens GN=CPNE3 PE=1 SV=1[more]
CPNE1_MOUSE3.210e-1635.62Copine-1 OS=Mus musculus GN=Cpne1 PE=1 SV=1[more]
CPNE1_HUMAN7.152e-1628.36Copine-1 OS=Homo sapiens GN=CPNE1 PE=1 SV=1[more]

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Properties
Property NameValue
Genbank descriptionCS00-C3-701-007-F05-CT.F Sweet orange fruit, development stadium (2 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY702494 ID=EY702494; Name=EY702494; organism=Citrus sinensis; type=EST; length=859bp
GGTCTAGTTTTATTCATGGAATCATCACAATTATCCGCAGCAGCCACCAT
ATGGGCAACCAAGTCAAGAGTATGCCCCACAACAGTATTATGCCACTCCA
TCTCAAAGCTACAGTGGTCGGGGCCCAGAGTCGACCAGGAAGCTGGAGAG
GAAGTACTCCAAGATAGATGATAACTATCATAGCCTGGAGCAGGTTACAG
ATGCTTTGGCACGTGCTGGGCTAGAGTCATCAAATCTCATTGTTGGTATT
GATTTCACAAAGAGCAATGAGTGGACTGGTGCAAGATCATTTCAGCGGAG
AAGTCTACATCACATTGGTGATGATCAGAATCCCTACGAACAAGCAATAT
CAATTATTGGAAAAACATTGTCTTCCTTTGATGAGGATAACTTAATTCCA
TGTTTTGGGTTTGGAGATGCTTCAACACATGATCAAGAAGTGTTCAGTTT
TTATCCGGACGAAAAGTTTTGTAATGGATTTGAAGAAGTGTTGAGACGAT
ATAGAGAATTGGTCCCTCACCTACGACTTGCAGGACCAACATCTTTTGCC
CCCATTATTGAAATGGCCATCACTATTGTTGAGCACAGTGGGGGGCAGTA
CCATGTCTTAGTGATAATAGCTGATGGGCAGGTGACCANAAGTGTTGATA
CTGAGCATGGCGCCATTAGCTCACAGGGAAAAGAAACTGGTTGAAGCATT
TGTTAAAGCGAGTGAGGACCCCTTGGCGATTATATTAGATTGGGGTAGGA
GATGGGCCCATGGGACCTGATGAGGGAAATTGATGAGTACATTCCTGCTC
GAGGCATTGGATAATTTTCCGGTTGGAAATTTTCCCAAATTATGCCAAGG
ATGTTGAGC
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