DY257475

Overview
NameDY257475
Unique NameDY257475
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1220
Libraries
Library NameType
AbsCFruitcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY257475 vs. ExPASy Swiss-Prot
Match: ROC3_ARATH (31 kDa ribonucleoprotein, chloroplastic OS=Arabidopsis thaliana GN=RBP31 PE=1 SV=1)

HSP 1 Score: 126.331 bits (316), Expect = 3.572e-28
Identity = 93/227 (40.97%), Postives = 114/227 (50.22%), Query Frame = 1
Query:  115 SSSTASVLKPLSSMADSTS--LLSPPSIFARNPYFSIHPRPRPIXXXXXXXXXXXXXXXXXXXXTTHF--SSFTAFVAQTSDWADQEEDKDNTTITLXXXXXXXXXXXXXXXXXGADETEGNLSDWGEPEGEDTVVEAGERQEGSXXXXXXXXXXXXXXXXDAKLFVGNLPYDVDSEKLAMLFEKAGTVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKGGGMFPRY 783
            SS   S LKPL+ MADS+S  + S PSI +      I      +                     TH   S F +FVAQTSDWA  EE  + +                       D +EG++S+  E EG+ +     ER E                  +AKLFVGNL YDV+S+ LAMLFE+AGTVEIAEVIYNRETD+SRGFGFVTMS+V+EAE     F RY
Sbjct:    3 SSIVTSSLKPLA-MADSSSSTIFSHPSISSTISSSRIRSSSVSLLTGRINLPLSFSRVSLSLKTKTHLKKSPFVSFVAQTSDWA--EEGGEGSVAVEETENSLESQDVSEGDESEGDASEGDVSEGDESEGDVSEGAVSERAE------------FPEPSEEAKLFVGNLAYDVNSQALAMLFEQAGTVEIAEVIYNRETDQSRGFGFVTMSSVDEAETAVEKFNRY 214          

HSP 2 Score: 68.9366 bits (167), Expect = 6.769e-11
Identity = 32/53 (60.38%), Postives = 42/53 (79.25%), Query Frame = 1
Query:  592 KLFVGNLPYDVDSEKLAMLFEKAGTVEIAEVIYNRETDRSRGFGFVTMSTVEE 750
            +++VGNLP+DVD+ +L  LF + G V  A V+Y+RET RSRGFGFVTMS V+E
Sbjct:  245 RVYVGNLPWDVDNGRLEQLFSEHGKVVEARVVYDRETGRSRGFGFVTMSDVDE 297          
BLAST of DY257475 vs. ExPASy Swiss-Prot
Match: ROC4_NICSY (31 kDa ribonucleoprotein, chloroplastic OS=Nicotiana sylvestris PE=1 SV=1)

HSP 1 Score: 119.783 bits (299), Expect = 3.344e-26
Identity = 94/237 (39.66%), Postives = 117/237 (49.37%), Query Frame = 1
Query:  112 MSSSTASVLKPLSSMADSTSLLSPPSIFARN--------PYFSIHPRPRPIXXXXXXXXXXXXXXXXXXXXTTHFSSFTAFVAQTSDWADQEEDKDNTTITLXXXXXXXXXXXXXXXXXGADETEGNLSDWGEPEGEDTVVEA-----GERQEGSXXXXXXXXXXXXXXXXDAKLFVGNLPYDVDSEKLAMLFEKAGTVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKGGGMFPRY 783
            MS +T  ++KP SSMA ++ L+S P +FA          PY S   +P  +                     T+     +   +TS  A QEE+  NT I                   G  +  G+L ++ EP GE+T  E      G+  E                  DAKLFVGNLPYDVDSE LA LFE+AG VEIAEVIYNR+TD+SRGFGFVTMSTVEEAEK   M+ RY
Sbjct:    1 MSCATKPIIKP-SSMATNSCLISLPPLFATTTKSKSFAYPYLSNTLKPIKLLHLSC----------------TYSPCILSPKKKTSVSALQEEE--NTLIL-----------------DGQGQESGDLFNF-EPSGEETEEEGFVEAVGDAGESDEVEADEEEEEFQEPPEDAKLFVGNLPYDVDSEGLARLFEQAGVVEIAEVIYNRDTDQSRGFGFVTMSTVEEAEKAVEMYNRY 200          
BLAST of DY257475 vs. ExPASy Swiss-Prot
Match: ROC3_NICSY (28 kDa ribonucleoprotein, chloroplastic OS=Nicotiana sylvestris PE=1 SV=1)

HSP 1 Score: 108.227 bits (269), Expect = 1.007e-22
Identity = 52/66 (78.79%), Postives = 59/66 (89.39%), Query Frame = 1
Query:  586 DAKLFVGNLPYDVDSEKLAMLFEKAGTVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKGGGMFPRY 783
            DAKLFVGNLPYD+DSE LA LF++AG VEIAEVIYNRETDRSRGFGFVTMSTVEEA+K   ++ +Y
Sbjct:   96 DAKLFVGNLPYDIDSEGLAQLFQQAGVVEIAEVIYNRETDRSRGFGFVTMSTVEEADKAVELYSQY 161          
BLAST of DY257475 vs. ExPASy Swiss-Prot
Match: ROC1_SPIOL (28 kDa ribonucleoprotein, chloroplastic OS=Spinacia oleracea PE=1 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 2.243e-22
Identity = 70/143 (48.95%), Postives = 81/143 (56.64%), Query Frame = 1
Query:  331 VAQTSDWADQEEDKDNTTITLXXXXXXXXXXXXXXXXXGADETEGNLSDWGEPEGEDTVVEAGERQEGSXXXXXXXXXXXXXXXXDAKLFVGNLPYDVDSEKLAMLFEKAGTVEIAEVIYNRETDRSRGFGFVTMSTVEEAEK 759
            VAQTS+W  ++E   N  +                   G  + EG +S WG    E  V + G  + G                 +AKLFVGNLPYDVDSEKLA +F+ AG VEIAEVIYNRETDRSRGFGFVTMSTVEEAEK
Sbjct:    2 VAQTSEW--EQEGSTNAVLE------------------GESDPEGAVS-WGS---ETQVSDEGGVEGGQGFSEPPE---------EAKLFVGNLPYDVDSEKLAGIFDAAGVVEIAEVIYNRETDRSRGFGFVTMSTVEEAEK 111          
BLAST of DY257475 vs. ExPASy Swiss-Prot
Match: ROC1_ARATH (Ribonucleoprotein At2g37220, chloroplastic OS=Arabidopsis thaliana GN=At2g37220 PE=1 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 5.351e-16
Identity = 44/72 (61.11%), Postives = 51/72 (70.83%), Query Frame = 1
Query:  586 DAKLFVGNLPYDVDSEKLAMLFEKAGTVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKGGGMFPRYVSLGFP 801
            D KLFVGNLP++VDS +LA LFE AG VE+ EVIY++ T RSRGFGFVTMS+V E E     F  Y   G P
Sbjct:   90 DLKLFVGNLPFNVDSAQLAQLFESAGNVEMVEVIYDKITGRSRGFGFVTMSSVSEVEAAAQQFNGYELDGRP 161          
BLAST of DY257475 vs. ExPASy Swiss-Prot
Match: ROC2_NICSY (29 kDa ribonucleoprotein B, chloroplastic OS=Nicotiana sylvestris PE=2 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 2.033e-15
Identity = 43/66 (65.15%), Postives = 48/66 (72.73%), Query Frame = 1
Query:  586 DAKLFVGNLPYDVDSEKLAMLFEKAGTVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKGGGMFPRY 783
            D KLFVGNLP+ VDS  LA LFE+AG VE+ EVIY++ T RSRGFGFVTMST EE E     F  Y
Sbjct:   86 DLKLFVGNLPFSVDSAALAGLFERAGNVEMVEVIYDKLTGRSRGFGFVTMSTKEEVEAAEQQFNGY 151          
BLAST of DY257475 vs. ExPASy Swiss-Prot
Match: ROC2_NICPL (31 kDa ribonucleoprotein, chloroplastic OS=Nicotiana plumbaginifolia PE=2 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 2.656e-15
Identity = 43/66 (65.15%), Postives = 48/66 (72.73%), Query Frame = 1
Query:  586 DAKLFVGNLPYDVDSEKLAMLFEKAGTVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKGGGMFPRY 783
            D KLFVGNLP+ VDS  LA LFE+AG VEI EVIY++ + RSRGFGFVTMST EE E     F  Y
Sbjct:   87 DLKLFVGNLPFSVDSAALAGLFERAGNVEIVEVIYDKLSGRSRGFGFVTMSTKEEVEAAEQQFNGY 152          
BLAST of DY257475 vs. ExPASy Swiss-Prot
Match: ROC2_ARATH (29 kDa ribonucleoprotein, chloroplastic OS=Arabidopsis thaliana GN=RBP29 PE=1 SV=2)

HSP 1 Score: 83.1889 bits (204), Expect = 3.468e-15
Identity = 43/72 (59.72%), Postives = 49/72 (68.06%), Query Frame = 1
Query:  586 DAKLFVGNLPYDVDSEKLAMLFEKAGTVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKGGGMFPRYVSLGFP 801
            D KLFVGNL ++VDS +LA LFE AG VE+ EVIY++ T RSRGFGFVTMST  E E     F  Y   G P
Sbjct:   98 DLKLFVGNLSFNVDSAQLAQLFESAGNVEMVEVIYDKVTGRSRGFGFVTMSTAAEVEAAAQQFNGYEFEGRP 169          
BLAST of DY257475 vs. ExPASy Swiss-Prot
Match: ROC1_NICSY (29 kDa ribonucleoprotein A, chloroplastic OS=Nicotiana sylvestris PE=2 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 2.936e-14
Identity = 40/66 (60.61%), Postives = 47/66 (71.21%), Query Frame = 1
Query:  586 DAKLFVGNLPYDVDSEKLAMLFEKAGTVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKGGGMFPRY 783
            D K+FVGNLP+  DS  LA LFE+AG VE+ EVIY++ T RSRGFGFVTMS+ EE E     F  Y
Sbjct:   86 DLKIFVGNLPFSADSAALAELFERAGNVEMVEVIYDKLTGRSRGFGFVTMSSKEEVEAACQQFNGY 151          
BLAST of DY257475 vs. ExPASy Swiss-Prot
Match: ROC1_NICPL (30 kDa ribonucleoprotein, chloroplastic OS=Nicotiana plumbaginifolia PE=2 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 4.240e-13
Identity = 39/66 (59.09%), Postives = 46/66 (69.70%), Query Frame = 1
Query:  586 DAKLFVGNLPYDVDSEKLAMLFEKAGTVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKGGGMFPRY 783
            D K+FVGNL +  DS  LA LFE+AG VE+ EVIY++ T RSRGFGFVTMS+ EE E     F  Y
Sbjct:   86 DLKIFVGNLLFSADSAALAELFERAGNVEMVEVIYDKLTGRSRGFGFVTMSSKEEVEAACQQFNGY 151          
The following BLAST results are available for this feature:
BLAST of DY257475 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 11
Match NameE-valueIdentityDescription
ROC3_ARATH3.572e-2840.9731 kDa ribonucleoprotein, chloroplastic OS=Arabido... [more]
ROC4_NICSY3.344e-2639.6631 kDa ribonucleoprotein, chloroplastic OS=Nicotia... [more]
ROC3_NICSY1.007e-2278.7928 kDa ribonucleoprotein, chloroplastic OS=Nicotia... [more]
ROC1_SPIOL2.243e-2248.9528 kDa ribonucleoprotein, chloroplastic OS=Spinaci... [more]
ROC1_ARATH5.351e-1661.11Ribonucleoprotein At2g37220, chloroplastic OS=Arab... [more]
ROC2_NICSY2.033e-1565.1529 kDa ribonucleoprotein B, chloroplastic OS=Nicot... [more]
ROC2_NICPL2.656e-1565.1531 kDa ribonucleoprotein, chloroplastic OS=Nicotia... [more]
ROC2_ARATH3.468e-1559.7229 kDa ribonucleoprotein, chloroplastic OS=Arabido... [more]
ROC1_NICSY2.936e-1460.6129 kDa ribonucleoprotein A, chloroplastic OS=Nicot... [more]
ROC1_NICPL4.240e-1359.0930 kDa ribonucleoprotein, chloroplastic OS=Nicotia... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAK2CH12FM1 AbsCFruit Citrus sinensis cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY257475 ID=DY257475; Name=DY257475; organism=Citrus sinensis; type=EST; length=1220bp
CTCGCTCGCTCTCTTGCTAAAGCTCTCCTCTCCCAGTCCTCTCTCTCACC
ATTCTACCCCTTATCCTTAGAGCTCTCCTCTGAAGTCTAAACCCTTTTCC
TCTCTGTGAAAATGTCTTCTTCAACAGCATCTGTATTGAAACCCTTATCA
TCGATGGCGGACTCTACTTCTCTACTTTCGCCGCCCTCTATCTTCGCCCG
AAACCCATATTTCTCTATCCACCCCAGACCCAGACCTATCAAGCTTCACC
TTTCCGACTCCTCCTTATCTTCGAAAGGTTTCTCCTTTAAGCTCAAAAAA
ACTACCCATTTCTCTTCATTCACGGCTTTCGTTGCCCAGACGTCGGACTG
GGCCGACCAAGAAGAAGACAAAGACAACACCACCATCACTCTTGAACAAG
AACAAGAAGAGAATGGGGAAGAAGAACCGAATTGGGAAAATCAAGGAGCC
GATGAAACCGAAGGGAATTTATCTGATTGGGGGGAACCCGAAGGCGAAGA
CACAGTTGTTGAGGCTGGTGAAAGGCAGGAGGGGAGTGGTGAAGAGGGCG
TTTTTGAGGAAGAGGAATTTGTGGAACCACCTGAGGATGCTAAGTTGTTT
GTTGGGAACTTGCCCTATGATGTTGATAGTGAAAAGCTTGCTATGCTTTT
TGAGAAGGCTGGAACTGTCGAGATTGCCGAGGTTATTTACAACAGGGAGA
CTGACCGGAGTCGTGGCTTTGGGTTCGTGACAATGAGTACTGTTGAGGAA
GCTGAAAAAGGTGGTGGAATGTTTCCCAGATATGTAAGTTTGGGTTTTCC
TTGTTTATCCCAGTATCACCTTTTGGCGTCCGTCAGTAATTTCTTGCAGG
TCAGGATGTTAAATGAAAAAAGGATATGGTCTTCCTTATGGGGATTTTGG
TTGTGGAATCTAGTTTCAATGGGAGTAAGAAAAAAATTTTTTGGAAAAAA
AAAAAAAAAAAAAAAAAACCCCAATTTTCTGGGAAAAAGTTGGCGTTTAA
AAAAAAGATTTTGGTTTATTATTTTTGTGGGGCCCAAACAGGGTCCCTTT
TCGTTAAAAAAAAAAATCTTTTTTTTTTCCCACCCCACGTGAAATCCCCC
CCATAAGAGGAAGACGAAAATAAAAGGGGCCAAAAATTGTGTTTTCCGGG
GGGGGCCCCCCGGGGCCCCCGGGGTCTTCCAAAAAAATCTTTCGGGATAG
TGTTTTCATTCTTTTCCCCA
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