DY257475
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of DY257475 vs. ExPASy Swiss-Prot
Match: ROC3_ARATH (31 kDa ribonucleoprotein, chloroplastic OS=Arabidopsis thaliana GN=RBP31 PE=1 SV=1) HSP 1 Score: 126.331 bits (316), Expect = 3.572e-28 Identity = 93/227 (40.97%), Postives = 114/227 (50.22%), Query Frame = 1 Query: 115 SSSTASVLKPLSSMADSTS--LLSPPSIFARNPYFSIHPRPRPIXXXXXXXXXXXXXXXXXXXXTTHF--SSFTAFVAQTSDWADQEEDKDNTTITLXXXXXXXXXXXXXXXXXGADETEGNLSDWGEPEGEDTVVEAGERQEGSXXXXXXXXXXXXXXXXDAKLFVGNLPYDVDSEKLAMLFEKAGTVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKGGGMFPRY 783 SS S LKPL+ MADS+S + S PSI + I + TH S F +FVAQTSDWA EE + + D +EG++S+ E EG+ + ER E +AKLFVGNL YDV+S+ LAMLFE+AGTVEIAEVIYNRETD+SRGFGFVTMS+V+EAE F RY Sbjct: 3 SSIVTSSLKPLA-MADSSSSTIFSHPSISSTISSSRIRSSSVSLLTGRINLPLSFSRVSLSLKTKTHLKKSPFVSFVAQTSDWA--EEGGEGSVAVEETENSLESQDVSEGDESEGDASEGDVSEGDESEGDVSEGAVSERAE------------FPEPSEEAKLFVGNLAYDVNSQALAMLFEQAGTVEIAEVIYNRETDQSRGFGFVTMSSVDEAETAVEKFNRY 214 HSP 2 Score: 68.9366 bits (167), Expect = 6.769e-11 Identity = 32/53 (60.38%), Postives = 42/53 (79.25%), Query Frame = 1 Query: 592 KLFVGNLPYDVDSEKLAMLFEKAGTVEIAEVIYNRETDRSRGFGFVTMSTVEE 750 +++VGNLP+DVD+ +L LF + G V A V+Y+RET RSRGFGFVTMS V+E Sbjct: 245 RVYVGNLPWDVDNGRLEQLFSEHGKVVEARVVYDRETGRSRGFGFVTMSDVDE 297
BLAST of DY257475 vs. ExPASy Swiss-Prot
Match: ROC4_NICSY (31 kDa ribonucleoprotein, chloroplastic OS=Nicotiana sylvestris PE=1 SV=1) HSP 1 Score: 119.783 bits (299), Expect = 3.344e-26 Identity = 94/237 (39.66%), Postives = 117/237 (49.37%), Query Frame = 1 Query: 112 MSSSTASVLKPLSSMADSTSLLSPPSIFARN--------PYFSIHPRPRPIXXXXXXXXXXXXXXXXXXXXTTHFSSFTAFVAQTSDWADQEEDKDNTTITLXXXXXXXXXXXXXXXXXGADETEGNLSDWGEPEGEDTVVEA-----GERQEGSXXXXXXXXXXXXXXXXDAKLFVGNLPYDVDSEKLAMLFEKAGTVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKGGGMFPRY 783 MS +T ++KP SSMA ++ L+S P +FA PY S +P + T+ + +TS A QEE+ NT I G + G+L ++ EP GE+T E G+ E DAKLFVGNLPYDVDSE LA LFE+AG VEIAEVIYNR+TD+SRGFGFVTMSTVEEAEK M+ RY Sbjct: 1 MSCATKPIIKP-SSMATNSCLISLPPLFATTTKSKSFAYPYLSNTLKPIKLLHLSC----------------TYSPCILSPKKKTSVSALQEEE--NTLIL-----------------DGQGQESGDLFNF-EPSGEETEEEGFVEAVGDAGESDEVEADEEEEEFQEPPEDAKLFVGNLPYDVDSEGLARLFEQAGVVEIAEVIYNRDTDQSRGFGFVTMSTVEEAEKAVEMYNRY 200
BLAST of DY257475 vs. ExPASy Swiss-Prot
Match: ROC3_NICSY (28 kDa ribonucleoprotein, chloroplastic OS=Nicotiana sylvestris PE=1 SV=1) HSP 1 Score: 108.227 bits (269), Expect = 1.007e-22 Identity = 52/66 (78.79%), Postives = 59/66 (89.39%), Query Frame = 1 Query: 586 DAKLFVGNLPYDVDSEKLAMLFEKAGTVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKGGGMFPRY 783 DAKLFVGNLPYD+DSE LA LF++AG VEIAEVIYNRETDRSRGFGFVTMSTVEEA+K ++ +Y Sbjct: 96 DAKLFVGNLPYDIDSEGLAQLFQQAGVVEIAEVIYNRETDRSRGFGFVTMSTVEEADKAVELYSQY 161
BLAST of DY257475 vs. ExPASy Swiss-Prot
Match: ROC1_SPIOL (28 kDa ribonucleoprotein, chloroplastic OS=Spinacia oleracea PE=1 SV=1) HSP 1 Score: 107.071 bits (266), Expect = 2.243e-22 Identity = 70/143 (48.95%), Postives = 81/143 (56.64%), Query Frame = 1 Query: 331 VAQTSDWADQEEDKDNTTITLXXXXXXXXXXXXXXXXXGADETEGNLSDWGEPEGEDTVVEAGERQEGSXXXXXXXXXXXXXXXXDAKLFVGNLPYDVDSEKLAMLFEKAGTVEIAEVIYNRETDRSRGFGFVTMSTVEEAEK 759 VAQTS+W ++E N + G + EG +S WG E V + G + G +AKLFVGNLPYDVDSEKLA +F+ AG VEIAEVIYNRETDRSRGFGFVTMSTVEEAEK Sbjct: 2 VAQTSEW--EQEGSTNAVLE------------------GESDPEGAVS-WGS---ETQVSDEGGVEGGQGFSEPPE---------EAKLFVGNLPYDVDSEKLAGIFDAAGVVEIAEVIYNRETDRSRGFGFVTMSTVEEAEK 111
BLAST of DY257475 vs. ExPASy Swiss-Prot
Match: ROC1_ARATH (Ribonucleoprotein At2g37220, chloroplastic OS=Arabidopsis thaliana GN=At2g37220 PE=1 SV=1) HSP 1 Score: 85.8853 bits (211), Expect = 5.351e-16 Identity = 44/72 (61.11%), Postives = 51/72 (70.83%), Query Frame = 1 Query: 586 DAKLFVGNLPYDVDSEKLAMLFEKAGTVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKGGGMFPRYVSLGFP 801 D KLFVGNLP++VDS +LA LFE AG VE+ EVIY++ T RSRGFGFVTMS+V E E F Y G P Sbjct: 90 DLKLFVGNLPFNVDSAQLAQLFESAGNVEMVEVIYDKITGRSRGFGFVTMSSVSEVEAAAQQFNGYELDGRP 161
BLAST of DY257475 vs. ExPASy Swiss-Prot
Match: ROC2_NICSY (29 kDa ribonucleoprotein B, chloroplastic OS=Nicotiana sylvestris PE=2 SV=1) HSP 1 Score: 83.9593 bits (206), Expect = 2.033e-15 Identity = 43/66 (65.15%), Postives = 48/66 (72.73%), Query Frame = 1 Query: 586 DAKLFVGNLPYDVDSEKLAMLFEKAGTVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKGGGMFPRY 783 D KLFVGNLP+ VDS LA LFE+AG VE+ EVIY++ T RSRGFGFVTMST EE E F Y Sbjct: 86 DLKLFVGNLPFSVDSAALAGLFERAGNVEMVEVIYDKLTGRSRGFGFVTMSTKEEVEAAEQQFNGY 151
BLAST of DY257475 vs. ExPASy Swiss-Prot
Match: ROC2_NICPL (31 kDa ribonucleoprotein, chloroplastic OS=Nicotiana plumbaginifolia PE=2 SV=1) HSP 1 Score: 83.5741 bits (205), Expect = 2.656e-15 Identity = 43/66 (65.15%), Postives = 48/66 (72.73%), Query Frame = 1 Query: 586 DAKLFVGNLPYDVDSEKLAMLFEKAGTVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKGGGMFPRY 783 D KLFVGNLP+ VDS LA LFE+AG VEI EVIY++ + RSRGFGFVTMST EE E F Y Sbjct: 87 DLKLFVGNLPFSVDSAALAGLFERAGNVEIVEVIYDKLSGRSRGFGFVTMSTKEEVEAAEQQFNGY 152
BLAST of DY257475 vs. ExPASy Swiss-Prot
Match: ROC2_ARATH (29 kDa ribonucleoprotein, chloroplastic OS=Arabidopsis thaliana GN=RBP29 PE=1 SV=2) HSP 1 Score: 83.1889 bits (204), Expect = 3.468e-15 Identity = 43/72 (59.72%), Postives = 49/72 (68.06%), Query Frame = 1 Query: 586 DAKLFVGNLPYDVDSEKLAMLFEKAGTVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKGGGMFPRYVSLGFP 801 D KLFVGNL ++VDS +LA LFE AG VE+ EVIY++ T RSRGFGFVTMST E E F Y G P Sbjct: 98 DLKLFVGNLSFNVDSAQLAQLFESAGNVEMVEVIYDKVTGRSRGFGFVTMSTAAEVEAAAQQFNGYEFEGRP 169
BLAST of DY257475 vs. ExPASy Swiss-Prot
Match: ROC1_NICSY (29 kDa ribonucleoprotein A, chloroplastic OS=Nicotiana sylvestris PE=2 SV=1) HSP 1 Score: 80.1073 bits (196), Expect = 2.936e-14 Identity = 40/66 (60.61%), Postives = 47/66 (71.21%), Query Frame = 1 Query: 586 DAKLFVGNLPYDVDSEKLAMLFEKAGTVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKGGGMFPRY 783 D K+FVGNLP+ DS LA LFE+AG VE+ EVIY++ T RSRGFGFVTMS+ EE E F Y Sbjct: 86 DLKIFVGNLPFSADSAALAELFERAGNVEMVEVIYDKLTGRSRGFGFVTMSSKEEVEAACQQFNGY 151
BLAST of DY257475 vs. ExPASy Swiss-Prot
Match: ROC1_NICPL (30 kDa ribonucleoprotein, chloroplastic OS=Nicotiana plumbaginifolia PE=2 SV=1) HSP 1 Score: 76.2554 bits (186), Expect = 4.240e-13 Identity = 39/66 (59.09%), Postives = 46/66 (69.70%), Query Frame = 1 Query: 586 DAKLFVGNLPYDVDSEKLAMLFEKAGTVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKGGGMFPRY 783 D K+FVGNL + DS LA LFE+AG VE+ EVIY++ T RSRGFGFVTMS+ EE E F Y Sbjct: 86 DLKIFVGNLLFSADSAALAELFERAGNVEMVEVIYDKLTGRSRGFGFVTMSSKEEVEAACQQFNGY 151 The following BLAST results are available for this feature:
BLAST of DY257475 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 11
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Sequences
The
following sequences are available for this feature:
EST sequence >DY257475 ID=DY257475; Name=DY257475; organism=Citrus sinensis; type=EST; length=1220bpback to top |