DY257473

Overview
NameDY257473
Unique NameDY257473
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1274
Libraries
Library NameType
AbsCFruitcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig6613 contig Csv1_Contig6613:1..1274. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
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BLAST of DY257473 vs. ExPASy Swiss-Prot
Match: Y5621_ARATH (PHD finger protein At5g26210 OS=Arabidopsis thaliana GN=At5g26210 PE=1 SV=2)

HSP 1 Score: 244.973 bits (624), Expect = 7.269e-64
Identity = 121/193 (62.69%), Postives = 137/193 (70.98%), Query Frame = 2 
Query:  152 EQVPPELPEPALGISFARDGMQDKDWLSLPAVHSDAWLLAVAFYFGARFGFDKADKKRLFNMINELPSLFEVVTGAAKKQVXXXXXXXXXXXXXXXXXXXVQRGSESHTKYSKPM---QPNXXXXXXXXXXXXXXXXTLCGACGDNYASDEFWICCDICEKWYHGKCVKIPPARDEHIKQYKCPSCTSNKRAR 721
            E+VPPELPEP LGI+FARDGM +KDWLSL AVHSDAWLLAVAF+FGARFGFDKAD+KRLFNM+N+LP++FEVV G AKKQ                     +RGSES  K+SKP                       T CGACG++YA+DEFWICCD+CE W+HGKCVKI PAR EHIKQYKCPSC SNKRAR
Sbjct:   65 EEVPPELPEPVLGINFARDGMAEKDWLSLVAVHSDAWLLAVAFFFGARFGFDKADRKRLFNMVNDLPTIFEVVAGTAKKQ--GKDKSSVSNNSSNRSKSSSKRGSESRAKFSKPEPKDDEEEEEEGVEEEDEDEQGETQCGACGESYAADEFWICCDLCEMWFHGKCVKITPARAEHIKQYKCPSC-SNKRAR 254
The following BLAST results are available for this feature:
BLAST of DY257473 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
Y5621_ARATH7.269e-6462.69PHD finger protein At5g26210 OS=Arabidopsis thalia... [more]
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Properties
Property NameValue
Genbank descriptionKN0AAK2CH10FM1 AbsCFruit Citrus sinensis cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY257473 ID=DY257473; Name=DY257473; organism=Citrus sinensis; type=EST; length=1274bp
GAGGATTTTAAATTTTGTTGAAAGAGATTCTAGGGGGTATTTGTGATGGC
ATGTAATAATTTTAAAAATTAATCTAATTTATCACGTAAGCTGGATGCTC
TCTGAATGATAGAGCTGCCTCATGAGCAGAGGAAATATAATTTGCCAGAC
TGAACAGGTGCCTCCAGAGCTTCCAGAGCCTGCATTGGGTATCAGCTTTG
CAAGAGATGGTATGCAAGATAAGGATTGGCTGTCTTTGCCTGCTGTCCAT
AGTGATGCATGGCTGCTGGCTGTTGCGTTTTATTTTGGTGCCAGGTTCGG
ATTTGATAAAGCTGACAAAAAACGGCTTTTTAACATGATAAATGAACTTC
CATCGTTATTTGAAGTTGTAACTGGTGCAGCTAAGAAACAAGTTAAGGAG
AAGTCATCACTCTCAAATCATAGTAGCAACAAATCCAAGACACACTCCAA
AGTGCAGCGAGGATCCGAATCTCATACCAAGTATTCTAAGCCAATGCAAC
CAAACGATGAAGATGAGGGCATGGACGAGGAAGAAGAAGATGAGCATGGT
GACACTTTATGCGGGGCTTGTGGTGACAACTATGCTTCAGATGAATTCTG
GATTTGTTGTGACATCTGCGAAAAGTGGTACCATGGGAAGTGTGTGAAGA
TCCCTCCAGCCAGGGATGAACATATCAAGCAATACAAGTGCCCTTCTTGC
ACCAGCAACAAGAGAGCCCGCCCCTAACCGAACGATGAAAAGATGTAATC
TCCTCCGTTCTTTCCTCTTTGTTGACCCCCGCCACTGGCTTGCCCATTGA
TAAATTTCCTTTCCCCGTTGCTATTGAGAAAATGCTTGAGACAGGGATAT
TCGGGTTAGTAAAAAATCTCCAAGTTCAAGAACAAAACGGGTAAATTGAA
GGTCAGGGAATTTAACGTGGGGAAAAAAATTACCGGTTCCTCTTAAACAA
AAGGTCTTTGGGTCCCTCCCGGCCGCTCTCTCTTTTTACACAGGGGCCTA
AAACACTGGGAACCTTGTAAAAAAAAAAAAAAAAAAAAAAAAACACCAAT
TTTCTCCTGACCAATGGCGCACAATCCAAAAAACTCATTTGACTATACTT
CTTTTTGCGGCCGGCCACGGGGTAACTATTCCTAACAAAATAAAAACCAA
CTTCGCTTCGCCCCCCCACCCCCCCAAACTACCCCCCTCTAAATTCGCCC
GCGAGACCCGACAACACCCGGACACTCCCACTGGCATCTCCCCACCTCCC
TTCCACCACCCCCCCCACCTGATC
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