DY257440

Overview
NameDY257440
Unique NameDY257440
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1289
Libraries
Library NameType
AbsCFruitcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig6607 contig Csv1_Contig6607:1..1289. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DY257440 vs. ExPASy Swiss-Prot
Match: RS2_ICTPU (40S ribosomal protein S2 OS=Ictalurus punctatus GN=rps2 PE=2 SV=1)

HSP 1 Score: 358.221 bits (918), Expect = 5.988e-98
Identity = 169/220 (76.82%), Postives = 193/220 (87.73%), Query Frame = 1
Query:  166 DDKQWIPVTKLGRLVKESKIKTIEEIYLYSFPIKEYQIVDRLISTTLKDEVMKIMPVQKQTRAGQRTRFKAFVVIGDSNGHVGLGVKCSKEVATAIRGAIILAKLSVIPVRRGYWGSSLGDPHTVPCKVTGRCGSVICRLVPAPRGTGIVAAPTPKKLLQLAGITDCYTTSRGSTRTLGNFVKATFAAIGNTYGFLTPDLWEDNDFKQSPYQEFIDLLAK 825
            +DK+W+PVTKLGRLVK+ KIK++EEIYLYS PIKE +I+D  + + LKDEV+KIMPVQKQTRAGQRTRFKAFV IGD NGHVGLGVKCSKEVATAIRGAIILAKLS+IPVRRGYWG+ +G PHTVPCKVTGRCGSV+ RL+PAPRGTGIV+AP PKKLL +AGI DCYT++RG T TLGNF KATF AI  TY +LTPDLW++  F +SPYQEF D LAK
Sbjct:   41 EDKEWVPVTKLGRLVKDMKIKSLEEIYLYSLPIKESEIIDFFLGSALKDEVLKIMPVQKQTRAGQRTRFKAFVAIGDYNGHVGLGVKCSKEVATAIRGAIILAKLSIIPVRRGYWGNKIGKPHTVPCKVTGRCGSVLVRLIPAPRGTGIVSAPVPKKLLMMAGIDDCYTSARGCTATLGNFAKATFDAISKTYSYLTPDLWKETVFTKSPYQEFTDHLAK 260          
BLAST of DY257440 vs. ExPASy Swiss-Prot
Match: RS2_URECA (40S ribosomal protein S2 OS=Urechis caupo GN=RPS2 PE=2 SV=1)

HSP 1 Score: 357.451 bits (916), Expect = 1.021e-97
Identity = 167/221 (75.57%), Postives = 193/221 (87.33%), Query Frame = 1
Query:  163 EDDKQWIPVTKLGRLVKESKIKTIEEIYLYSFPIKEYQIVDRLISTTLKDEVMKIMPVQKQTRAGQRTRFKAFVVIGDSNGHVGLGVKCSKEVATAIRGAIILAKLSVIPVRRGYWGSSLGDPHTVPCKVTGRCGSVICRLVPAPRGTGIVAAPTPKKLLQLAGITDCYTTSRGSTRTLGNFVKATFAAIGNTYGFLTPDLWEDNDFKQSPYQEFIDLLAK 825
            + DK+W+PVTKLGRLVK+ KIKT+EEIYL+S PIKE++I+D  +   LKDEV+KIMPVQKQTRAGQRTRFKAFV IGD NGHVGLGVKCSKEVATAIRGAIILAKLSV+PVRRGYWG+ +G PHTVPCKVTG+CGSV+ RL+PAPRGTGIV+AP PKKLL +AGI DCYT++RG T TLGNF KAT+AAI  TY +LTPDLW +  F +SPYQE+ D LAK
Sbjct:   41 DGDKEWVPVTKLGRLVKDMKIKTLEEIYLFSLPIKEFEIIDFFLGDALKDEVLKIMPVQKQTRAGQRTRFKAFVAIGDYNGHVGLGVKCSKEVATAIRGAIILAKLSVVPVRRGYWGNKIGKPHTVPCKVTGKCGSVLVRLIPAPRGTGIVSAPVPKKLLAMAGIDDCYTSARGQTATLGNFAKATYAAIAATYSYLTPDLWRETVFTKSPYQEYTDYLAK 261          
BLAST of DY257440 vs. ExPASy Swiss-Prot
Match: RS2_RAT (40S ribosomal protein S2 OS=Rattus norvegicus GN=Rps2 PE=1 SV=1)

HSP 1 Score: 355.14 bits (910), Expect = 5.069e-97
Identity = 167/220 (75.91%), Postives = 192/220 (87.27%), Query Frame = 1
Query:  166 DDKQWIPVTKLGRLVKESKIKTIEEIYLYSFPIKEYQIVDRLISTTLKDEVMKIMPVQKQTRAGQRTRFKAFVVIGDSNGHVGLGVKCSKEVATAIRGAIILAKLSVIPVRRGYWGSSLGDPHTVPCKVTGRCGSVICRLVPAPRGTGIVAAPTPKKLLQLAGITDCYTTSRGSTRTLGNFVKATFAAIGNTYGFLTPDLWEDNDFKQSPYQEFIDLLAK 825
            +DK+WIPVTKLGRLVK+ KIK++EEIYL+S PIKE +I+D  +  +LKDEV+KIMPVQKQTRAGQRTRFKAFV IGD NGHVGLGVKCSKEVATAIRGAIILAKLS++PVRRGYWG+ +G PHTVPCKVTGRCGSV+ RL+PAPRGTGIV+AP PKKLL +AGI DCYT++RG T TLGNF KATF AI  TY +LTPDLW++  F +SPYQEF D L K
Sbjct:   56 EDKEWIPVTKLGRLVKDMKIKSLEEIYLFSLPIKESEIIDFFLGASLKDEVLKIMPVQKQTRAGQRTRFKAFVAIGDYNGHVGLGVKCSKEVATAIRGAIILAKLSIVPVRRGYWGNKIGKPHTVPCKVTGRCGSVLVRLIPAPRGTGIVSAPVPKKLLMMAGIDDCYTSARGCTATLGNFAKATFDAISKTYSYLTPDLWKETVFTKSPYQEFTDHLVK 275          
BLAST of DY257440 vs. ExPASy Swiss-Prot
Match: RS2_MOUSE (40S ribosomal protein S2 OS=Mus musculus GN=Rps2 PE=1 SV=3)

HSP 1 Score: 355.14 bits (910), Expect = 5.069e-97
Identity = 167/220 (75.91%), Postives = 192/220 (87.27%), Query Frame = 1
Query:  166 DDKQWIPVTKLGRLVKESKIKTIEEIYLYSFPIKEYQIVDRLISTTLKDEVMKIMPVQKQTRAGQRTRFKAFVVIGDSNGHVGLGVKCSKEVATAIRGAIILAKLSVIPVRRGYWGSSLGDPHTVPCKVTGRCGSVICRLVPAPRGTGIVAAPTPKKLLQLAGITDCYTTSRGSTRTLGNFVKATFAAIGNTYGFLTPDLWEDNDFKQSPYQEFIDLLAK 825
            +DK+WIPVTKLGRLVK+ KIK++EEIYL+S PIKE +I+D  +  +LKDEV+KIMPVQKQTRAGQRTRFKAFV IGD NGHVGLGVKCSKEVATAIRGAIILAKLS++PVRRGYWG+ +G PHTVPCKVTGRCGSV+ RL+PAPRGTGIV+AP PKKLL +AGI DCYT++RG T TLGNF KATF AI  TY +LTPDLW++  F +SPYQEF D L K
Sbjct:   56 EDKEWIPVTKLGRLVKDMKIKSLEEIYLFSLPIKESEIIDFFLGASLKDEVLKIMPVQKQTRAGQRTRFKAFVAIGDYNGHVGLGVKCSKEVATAIRGAIILAKLSIVPVRRGYWGNKIGKPHTVPCKVTGRCGSVLVRLIPAPRGTGIVSAPVPKKLLMMAGIDDCYTSARGCTATLGNFAKATFDAISKTYSYLTPDLWKETVFTKSPYQEFTDHLVK 275          
BLAST of DY257440 vs. ExPASy Swiss-Prot
Match: RS2_DROME (40S ribosomal protein S2 OS=Drosophila melanogaster GN=sop PE=1 SV=2)

HSP 1 Score: 354.369 bits (908), Expect = 8.647e-97
Identity = 164/221 (74.21%), Postives = 194/221 (87.78%), Query Frame = 1
Query:  163 EDDKQWIPVTKLGRLVKESKIKTIEEIYLYSFPIKEYQIVDRLISTTLKDEVMKIMPVQKQTRAGQRTRFKAFVVIGDSNGHVGLGVKCSKEVATAIRGAIILAKLSVIPVRRGYWGSSLGDPHTVPCKVTGRCGSVICRLVPAPRGTGIVAAPTPKKLLQLAGITDCYTTSRGSTRTLGNFVKATFAAIGNTYGFLTPDLWEDNDFKQSPYQEFIDLLAK 825
            ED K+W+PVTKLGRLV+E KIK++EEIYLYS PIKE++I+D  + ++LKDEV+KIMPVQKQTRAGQRTRFKAFV IGD+NGH+GLGVKCSKEVATAIRGAIILAKLSV+PVRRGYWG+ +G PHTVPCKVTG+CGSV  RL+PAPRGTGIV+AP PKKLL +AGI DCYT++RGST TLGNF KAT+AAI  TY +LTPDLW++     +PYQ + D L+K
Sbjct:   38 EDSKEWVPVTKLGRLVREGKIKSLEEIYLYSLPIKEFEIIDFFLGSSLKDEVLKIMPVQKQTRAGQRTRFKAFVAIGDNNGHIGLGVKCSKEVATAIRGAIILAKLSVVPVRRGYWGNKIGKPHTVPCKVTGKCGSVSVRLIPAPRGTGIVSAPVPKKLLTMAGIEDCYTSARGSTGTLGNFAKATYAAIAKTYAYLTPDLWKEMPLGSTPYQAYSDFLSK 258          
BLAST of DY257440 vs. ExPASy Swiss-Prot
Match: RS2_BOVIN (40S ribosomal protein S2 OS=Bos taurus GN=RPS2 PE=2 SV=2)

HSP 1 Score: 354.369 bits (908), Expect = 8.647e-97
Identity = 166/220 (75.45%), Postives = 192/220 (87.27%), Query Frame = 1
Query:  166 DDKQWIPVTKLGRLVKESKIKTIEEIYLYSFPIKEYQIVDRLISTTLKDEVMKIMPVQKQTRAGQRTRFKAFVVIGDSNGHVGLGVKCSKEVATAIRGAIILAKLSVIPVRRGYWGSSLGDPHTVPCKVTGRCGSVICRLVPAPRGTGIVAAPTPKKLLQLAGITDCYTTSRGSTRTLGNFVKATFAAIGNTYGFLTPDLWEDNDFKQSPYQEFIDLLAK 825
            +DK+W+PVTKLGRLVK+ KIK++EEIYL+S PIKE +I+D  +  +LKDEV+KIMPVQKQTRAGQRTRFKAFV IGD NGHVGLGVKCSKEVATAIRGAIILAKLS++PVRRGYWG+ +G PHTVPCKVTGRCGSV+ RL+PAPRGTGIV+AP PKKLL +AGI DCYT++RG T TLGNF KATF AI  TY +LTPDLW++  F +SPYQEF D L K
Sbjct:   56 EDKEWLPVTKLGRLVKDMKIKSLEEIYLFSLPIKESEIIDFFLGASLKDEVLKIMPVQKQTRAGQRTRFKAFVAIGDYNGHVGLGVKCSKEVATAIRGAIILAKLSIVPVRRGYWGNKIGKPHTVPCKVTGRCGSVLVRLIPAPRGTGIVSAPVPKKLLMMAGIDDCYTSARGCTATLGNFAKATFDAISKTYSYLTPDLWKETVFTKSPYQEFTDHLVK 275          
BLAST of DY257440 vs. ExPASy Swiss-Prot
Match: RS2_HUMAN (40S ribosomal protein S2 OS=Homo sapiens GN=RPS2 PE=1 SV=2)

HSP 1 Score: 353.984 bits (907), Expect = 1.129e-96
Identity = 166/220 (75.45%), Postives = 192/220 (87.27%), Query Frame = 1
Query:  166 DDKQWIPVTKLGRLVKESKIKTIEEIYLYSFPIKEYQIVDRLISTTLKDEVMKIMPVQKQTRAGQRTRFKAFVVIGDSNGHVGLGVKCSKEVATAIRGAIILAKLSVIPVRRGYWGSSLGDPHTVPCKVTGRCGSVICRLVPAPRGTGIVAAPTPKKLLQLAGITDCYTTSRGSTRTLGNFVKATFAAIGNTYGFLTPDLWEDNDFKQSPYQEFIDLLAK 825
            +DK+W+PVTKLGRLVK+ KIK++EEIYL+S PIKE +I+D  +  +LKDEV+KIMPVQKQTRAGQRTRFKAFV IGD NGHVGLGVKCSKEVATAIRGAIILAKLS++PVRRGYWG+ +G PHTVPCKVTGRCGSV+ RL+PAPRGTGIV+AP PKKLL +AGI DCYT++RG T TLGNF KATF AI  TY +LTPDLW++  F +SPYQEF D L K
Sbjct:   56 EDKEWMPVTKLGRLVKDMKIKSLEEIYLFSLPIKESEIIDFFLGASLKDEVLKIMPVQKQTRAGQRTRFKAFVAIGDYNGHVGLGVKCSKEVATAIRGAIILAKLSIVPVRRGYWGNKIGKPHTVPCKVTGRCGSVLVRLIPAPRGTGIVSAPVPKKLLMMAGIDDCYTSARGCTATLGNFAKATFDAISKTYSYLTPDLWKETVFTKSPYQEFTDHLVK 275          
BLAST of DY257440 vs. ExPASy Swiss-Prot
Match: RS24_ARATH (40S ribosomal protein S2-4 OS=Arabidopsis thaliana GN=RPS2D PE=2 SV=1)

HSP 1 Score: 348.591 bits (893), Expect = 4.745e-95
Identity = 163/222 (73.42%), Postives = 192/222 (86.49%), Query Frame = 1
Query:  166 DDKQWIPVTKLGRLVKESKIKTIEEIYLYSFPIKEYQIVDRLISTTLKDEVMKIMPVQKQTRAGQRTRFKAFVVIGDSNGHVGLGVKCSKEVATAIRGAIILAKLSVIPVRRGYWGSSLGDPHTVPCKVTGRCGSVICRLVPAPRGTGIVAAPTPKKLLQLAGITDCYTTSRGSTRTLGNFVKATFAAIGNTYGFLTPDLWEDNDFKQSPYQEFIDLLAKAP 831
            ++++W+PVTKLGRLVKE KI  IE+IYL+S P+KEYQI+D L+  +LKDEVMKIMPVQKQTRAGQRTRFKAF+V+GDSNGHVGLGVKCSKEVATAIRGAIILAKLSV+P+RRGYWG+ +G PHTVPCKVTG+CGSV  R+VPAPRG+GIVAA  PKK+LQ AGI D +T+SRGST+TLGNFVKATF  +  TYGFLTP+ W++  F +SPYQE  D L   P
Sbjct:   41 EEEKWVPVTKLGRLVKEGKITKIEQIYLHSLPVKEYQIIDLLVGPSLKDEVMKIMPVQKQTRAGQRTRFKAFIVVGDSNGHVGLGVKCSKEVATAIRGAIILAKLSVVPIRRGYWGNKIGKPHTVPCKVTGKCGSVTVRMVPAPRGSGIVAARVPKKVLQFAGIDDVFTSSRGSTKTLGNFVKATFDCLQKTYGFLTPEFWKETRFSKSPYQEHTDFLLIPP 262          
BLAST of DY257440 vs. ExPASy Swiss-Prot
Match: RS23_ARATH (40S ribosomal protein S2-3 OS=Arabidopsis thaliana GN=RPS2C PE=1 SV=2)

HSP 1 Score: 346.28 bits (887), Expect = 2.355e-94
Identity = 164/219 (74.89%), Postives = 189/219 (86.30%), Query Frame = 1
Query:  166 DDKQWIPVTKLGRLVKESKIKTIEEIYLYSFPIKEYQIVDRLISTTLKDEVMKIMPVQKQTRAGQRTRFKAFVVIGDSNGHVGLGVKCSKEVATAIRGAIILAKLSVIPVRRGYWGSSLGDPHTVPCKVTGRCGSVICRLVPAPRGTGIVAAPTPKKLLQLAGITDCYTTSRGSTRTLGNFVKATFAAIGNTYGFLTPDLWEDNDFKQSPYQEFIDLLA 822
            ++++W+PVTKLGRLV    IK IE+IYL+S P+KEYQI+D LI  TLKDEVMKIMPVQKQTRAGQRTRFKAFVV+GD NGHVGLGVKCSKEVATAIRGAIILAKLSV+PVRRGYWG+ +G PHTVPCKVTG+CGSV  R+VPAPRG+GIVAA  PKK+LQ AGI D +T+SRGST+TLGNFVKATF  +  TYGFLTP+ W++  F +SPYQE  D LA
Sbjct:   50 EEEKWVPVTKLGRLVAAGHIKQIEQIYLHSLPVKEYQIIDMLIGPTLKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDGNGHVGLGVKCSKEVATAIRGAIILAKLSVVPVRRGYWGNKIGKPHTVPCKVTGKCGSVTVRMVPAPRGSGIVAARVPKKVLQFAGIDDVFTSSRGSTKTLGNFVKATFDCLQKTYGFLTPEFWKETRFSRSPYQEHTDFLA 268          
BLAST of DY257440 vs. ExPASy Swiss-Prot
Match: RS22_ARATH (40S ribosomal protein S2-2 OS=Arabidopsis thaliana GN=RPS2B PE=2 SV=1)

HSP 1 Score: 346.28 bits (887), Expect = 2.355e-94
Identity = 163/229 (71.18%), Postives = 193/229 (84.28%), Query Frame = 1
Query:  166 DDKQWIPVTKLGRLVKESKIKTIEEIYLYSFPIKEYQIVDRLISTTLKDEVMKIMPVQKQTRAGQRTRFKAFVVIGDSNGHVGLGVKCSKEVATAIRGAIILAKLSVIPVRRGYWGSSLGDPHTVPCKVTGRCGSVICRLVPAPRGTGIVAAPTPKKLLQLAGITDCYTTSRGSTRTLGNFVKATFAAIGNTYGFLTPDLWEDNDFKQSPYQEFIDLLAKAPEQRKKLI 852
            ++ +W+PVTKLGRLV ++KI  +E+IYL+S P+KEYQI+D L+  TLKDEVMKIMPVQKQTRAGQRTRFKAFVV+GD NGHVGLGVKCSKEVATAIRGAIILAKLSV+PVRRGYWG+ +G PHTVPCKVTG+CGSV  R+VPAPRG+GIVAA  PKK+LQ AGI D +T+SRGST+TLGNFVKATF  +  TYGFLTP+ W++  F +SPYQE  D L+       K+I
Sbjct:   49 EETKWVPVTKLGRLVADNKITKLEQIYLHSLPVKEYQIIDHLVGPTLKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDGNGHVGLGVKCSKEVATAIRGAIILAKLSVVPVRRGYWGNKIGKPHTVPCKVTGKCGSVTVRMVPAPRGSGIVAARVPKKVLQFAGIDDVFTSSRGSTKTLGNFVKATFDCLQKTYGFLTPEFWKETRFSRSPYQEHTDFLSTKAVSATKVI 277          
The following BLAST results are available for this feature:
BLAST of DY257440 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 398
Match NameE-valueIdentityDescription
RS2_ICTPU5.988e-9876.8240S ribosomal protein S2 OS=Ictalurus punctatus GN... [more]
RS2_URECA1.021e-9775.5740S ribosomal protein S2 OS=Urechis caupo GN=RPS2 ... [more]
RS2_RAT5.069e-9775.9140S ribosomal protein S2 OS=Rattus norvegicus GN=R... [more]
RS2_MOUSE5.069e-9775.9140S ribosomal protein S2 OS=Mus musculus GN=Rps2 P... [more]
RS2_DROME8.647e-9774.2140S ribosomal protein S2 OS=Drosophila melanogaste... [more]
RS2_BOVIN8.647e-9775.4540S ribosomal protein S2 OS=Bos taurus GN=RPS2 PE=... [more]
RS2_HUMAN1.129e-9675.4540S ribosomal protein S2 OS=Homo sapiens GN=RPS2 P... [more]
RS24_ARATH4.745e-9573.4240S ribosomal protein S2-4 OS=Arabidopsis thaliana... [more]
RS23_ARATH2.355e-9474.8940S ribosomal protein S2-3 OS=Arabidopsis thaliana... [more]
RS22_ARATH2.355e-9471.1840S ribosomal protein S2-2 OS=Arabidopsis thaliana... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAK2CC04FM1 AbsCFruit Citrus sinensis cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY257440 ID=DY257440; Name=DY257440; organism=Citrus sinensis; type=EST; length=1289bp
GCCGAGGTACTCCTTTCTTGAAGTTTATATTATCCCGTGGCTGACTCACG
CACGGACGATATGTTCTTTGGTGGACGTGGTGGTTACGGACGTGGTTTCG
GACGTGGGGCCTATCCACGCCCAGGCCGGGGACGCGGTCGAGGTCGACTT
GGTGCACGCTAGGAAGACGATAAACAATGGATTCCTGTTACGAAGCTTGG
ACGTCTAGTTAAAGAAAGCAAGATCAAAACCATTGAAGAAATATATTTAT
ATTCATTTCCCATCAAGGAATATCAAATTGTAGATCGTTTAATCAGCACT
ACATTAAAAGATGAAGTCATGAAGATTATGCCCGTTCAAAAGCAGACCCG
TGCTGGTCAGAGGACTCGATTTAAGGCTTTTGTTGTAATTGGCGATTCCA
ACGGGCATGTAGGCCTTGGGGTTAAATGCTCCAAAGAAGTGGCGACAGCT
ATTCGCGGTGCTATTATTCTTGCTAAACTCTCAGTAATTCCTGTCCGACG
TGGATATTGGGGTTCATCTCTTGGTGATCCTCACACTGTTCCTTGCAAGG
TTACTGGCAGATGTGGTTCCGTTATATGCCGTCTCGTCCCCGCTCCTCGT
GGAACCGGTATCGTCGCTGCTCCCACTCCTAAAAAACTTTTACAATTAGC
CGGTATCACTGACTGTTATACTACGTCTCGTGGTTCAACTCGTACTTTGG
GTAATTTTGTTAAAGCCACCTTCGCTGCCATTGGCAATACCTACGGCTTC
TTGACCCCTGACCTGTGGGAAGATAACGATTTTAAACAGTCTCCTTATCA
AGAATTCATTGACCTTTTGGCTAAAGCTCCTGAACAGAGGAAAAAGTTAA
TTGGTTAATGTGTCATTTCCTATTATTCCTTTGGTATAAACTTTTTCCAA
AGAAGAACAAATTTTTATAACAAATTTGGGTTCTTTAAAAAAAAATAAAA
CAAAAATTTTAAGGAAGTTATTTTTGTTAAACCCCCCTTCCCTCGCCTTG
GCCAACCCCTACCGCCTTTTTGACCCCCTGGCTTGGGGGAAAAAAACAAA
ATTTTAAAACGCCTCCCATAAAAAAAAATTTCGGGGCTTTTTTGTTCTTA
AGGCCCCCTGAAAAAGAAGAAAAAAAATTTAATGTTTTTTTATGGGTTTT
CTTTTTTCTATTTTTTTTTTTATGTTTTTTTATACTCTTTTTTTCCCCCA
ACAAAAACAAATAACTTTTTTTTTTTATTATAATAAAAATTTTTCTGTGT
TCTCTTTTTATTTATTAAAAATAATAATAAAATAAAAAA
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