CX301117

Overview
NameCX301117
Unique NameCX301117
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length674
Libraries
Library NameType
PhyRootSw1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX301117 vs. ExPASy Swiss-Prot
Match: RS7_ICTPU (40S ribosomal protein S7 OS=Ictalurus punctatus GN=rps7 PE=2 SV=1)

HSP 1 Score: 224.172 bits (570), Expect = 4.994e-58
Identity = 116/188 (61.70%), Postives = 145/188 (77.13%), Query Frame = 1
Query:   46 SKSKIVKSNGATPDEFELNVAQEFANFEASATELKADLHDLHISAAKELEIDGGRKAIIIFVPFRQLRDFHKVQARLVRELEKKFSGRHVVLVAQRTILPKSINRSSAQ-KGPRPRSRTLTAVHEAVLEDIVYPTEIVGKRIRYRVDGSKILKVFLDPKDLVNVETKLDTFAKVYKSLTNKDVVFEFP 606
            S +KIVK+NG  PDEFE  ++Q     E ++ +LKA L +L+I+AAKE+E+ G RKAIIIFVP  QL+ F K+Q RLVRELEKKFSG+HVV +AQR ILPK   +S  + K  RPRSRTLTAVH+A+LED+VYP+EIVGKRIR ++D S+++KV LD     NVE K++TFA VYK LT KDVVFEFP
Sbjct:    4 SSAKIVKANGEKPDEFESGISQALLELEMNS-DLKAQLRELNITAAKEIEVGGSRKAIIIFVPVPQLKAFQKIQVRLVRELEKKFSGKHVVFIAQRRILPKPTRKSRTKNKQKRPRSRTLTAVHDAILEDLVYPSEIVGKRIRVKLDSSRLIKVHLDKAQQNNVEHKVETFAGVYKKLTGKDVVFEFP 190          
BLAST of CX301117 vs. ExPASy Swiss-Prot
Match: RS7_RAT (40S ribosomal protein S7 OS=Rattus norvegicus GN=Rps7 PE=1 SV=1)

HSP 1 Score: 223.402 bits (568), Expect = 8.519e-58
Identity = 115/188 (61.17%), Postives = 145/188 (77.13%), Query Frame = 1
Query:   46 SKSKIVKSNGATPDEFELNVAQEFANFEASATELKADLHDLHISAAKELEIDGGRKAIIIFVPFRQLRDFHKVQARLVRELEKKFSGRHVVLVAQRTILPKSINRSSAQ-KGPRPRSRTLTAVHEAVLEDIVYPTEIVGKRIRYRVDGSKILKVFLDPKDLVNVETKLDTFAKVYKSLTNKDVVFEFP 606
            S +KIVK NG  PDEFE  ++Q     E ++ +LKA L +L+I+AAKE+E+ GGRKAIIIFVP  QL+ F K+Q RLVRELEKKFSG+HVV +AQR ILPK   +S  + K  RPRSRTLTAVH+A+LED+V+P+EIVGKRIR ++DGS+++KV LD     NVE K++TF+ VYK LT KDV FEFP
Sbjct:    4 SSAKIVKPNGEKPDEFESGISQALLELEMNS-DLKAQLRELNITAAKEIEVGGGRKAIIIFVPVPQLKSFQKIQVRLVRELEKKFSGKHVVFIAQRRILPKPTRKSRTKNKQKRPRSRTLTAVHDAILEDLVFPSEIVGKRIRVKLDGSRLIKVHLDKAQQNNVEHKVETFSGVYKKLTGKDVNFEFP 190          
BLAST of CX301117 vs. ExPASy Swiss-Prot
Match: RS7_MOUSE (40S ribosomal protein S7 OS=Mus musculus GN=Rps7 PE=2 SV=1)

HSP 1 Score: 223.402 bits (568), Expect = 8.519e-58
Identity = 115/188 (61.17%), Postives = 145/188 (77.13%), Query Frame = 1
Query:   46 SKSKIVKSNGATPDEFELNVAQEFANFEASATELKADLHDLHISAAKELEIDGGRKAIIIFVPFRQLRDFHKVQARLVRELEKKFSGRHVVLVAQRTILPKSINRSSAQ-KGPRPRSRTLTAVHEAVLEDIVYPTEIVGKRIRYRVDGSKILKVFLDPKDLVNVETKLDTFAKVYKSLTNKDVVFEFP 606
            S +KIVK NG  PDEFE  ++Q     E ++ +LKA L +L+I+AAKE+E+ GGRKAIIIFVP  QL+ F K+Q RLVRELEKKFSG+HVV +AQR ILPK   +S  + K  RPRSRTLTAVH+A+LED+V+P+EIVGKRIR ++DGS+++KV LD     NVE K++TF+ VYK LT KDV FEFP
Sbjct:    4 SSAKIVKPNGEKPDEFESGISQALLELEMNS-DLKAQLRELNITAAKEIEVGGGRKAIIIFVPVPQLKSFQKIQVRLVRELEKKFSGKHVVFIAQRRILPKPTRKSRTKNKQKRPRSRTLTAVHDAILEDLVFPSEIVGKRIRVKLDGSRLIKVHLDKAQQNNVEHKVETFSGVYKKLTGKDVNFEFP 190          
BLAST of CX301117 vs. ExPASy Swiss-Prot
Match: RS7_HUMAN (40S ribosomal protein S7 OS=Homo sapiens GN=RPS7 PE=1 SV=1)

HSP 1 Score: 223.402 bits (568), Expect = 8.519e-58
Identity = 115/188 (61.17%), Postives = 145/188 (77.13%), Query Frame = 1
Query:   46 SKSKIVKSNGATPDEFELNVAQEFANFEASATELKADLHDLHISAAKELEIDGGRKAIIIFVPFRQLRDFHKVQARLVRELEKKFSGRHVVLVAQRTILPKSINRSSAQ-KGPRPRSRTLTAVHEAVLEDIVYPTEIVGKRIRYRVDGSKILKVFLDPKDLVNVETKLDTFAKVYKSLTNKDVVFEFP 606
            S +KIVK NG  PDEFE  ++Q     E ++ +LKA L +L+I+AAKE+E+ GGRKAIIIFVP  QL+ F K+Q RLVRELEKKFSG+HVV +AQR ILPK   +S  + K  RPRSRTLTAVH+A+LED+V+P+EIVGKRIR ++DGS+++KV LD     NVE K++TF+ VYK LT KDV FEFP
Sbjct:    4 SSAKIVKPNGEKPDEFESGISQALLELEMNS-DLKAQLRELNITAAKEIEVGGGRKAIIIFVPVPQLKSFQKIQVRLVRELEKKFSGKHVVFIAQRRILPKPTRKSRTKNKQKRPRSRTLTAVHDAILEDLVFPSEIVGKRIRVKLDGSRLIKVHLDKAQQNNVEHKVETFSGVYKKLTGKDVNFEFP 190          
BLAST of CX301117 vs. ExPASy Swiss-Prot
Match: RS7_FELCA (40S ribosomal protein S7 OS=Felis catus GN=RPS7 PE=2 SV=1)

HSP 1 Score: 223.402 bits (568), Expect = 8.519e-58
Identity = 115/188 (61.17%), Postives = 145/188 (77.13%), Query Frame = 1
Query:   46 SKSKIVKSNGATPDEFELNVAQEFANFEASATELKADLHDLHISAAKELEIDGGRKAIIIFVPFRQLRDFHKVQARLVRELEKKFSGRHVVLVAQRTILPKSINRSSAQ-KGPRPRSRTLTAVHEAVLEDIVYPTEIVGKRIRYRVDGSKILKVFLDPKDLVNVETKLDTFAKVYKSLTNKDVVFEFP 606
            S +KIVK NG  PDEFE  ++Q     E ++ +LKA L +L+I+AAKE+E+ GGRKAIIIFVP  QL+ F K+Q RLVRELEKKFSG+HVV +AQR ILPK   +S  + K  RPRSRTLTAVH+A+LED+V+P+EIVGKRIR ++DGS+++KV LD     NVE K++TF+ VYK LT KDV FEFP
Sbjct:    4 SSAKIVKPNGEKPDEFESGISQALLELEMNS-DLKAQLRELNITAAKEIEVGGGRKAIIIFVPVPQLKSFQKIQVRLVRELEKKFSGKHVVFIAQRRILPKPTRKSRTKNKQKRPRSRTLTAVHDAILEDLVFPSEIVGKRIRVKLDGSRLIKVHLDKAQQNNVEHKVETFSGVYKKLTGKDVNFEFP 190          
BLAST of CX301117 vs. ExPASy Swiss-Prot
Match: RS7_BOVIN (40S ribosomal protein S7 OS=Bos taurus GN=RPS7 PE=2 SV=1)

HSP 1 Score: 223.402 bits (568), Expect = 8.519e-58
Identity = 115/188 (61.17%), Postives = 145/188 (77.13%), Query Frame = 1
Query:   46 SKSKIVKSNGATPDEFELNVAQEFANFEASATELKADLHDLHISAAKELEIDGGRKAIIIFVPFRQLRDFHKVQARLVRELEKKFSGRHVVLVAQRTILPKSINRSSAQ-KGPRPRSRTLTAVHEAVLEDIVYPTEIVGKRIRYRVDGSKILKVFLDPKDLVNVETKLDTFAKVYKSLTNKDVVFEFP 606
            S +KIVK NG  PDEFE  ++Q     E ++ +LKA L +L+I+AAKE+E+ GGRKAIIIFVP  QL+ F K+Q RLVRELEKKFSG+HVV +AQR ILPK   +S  + K  RPRSRTLTAVH+A+LED+V+P+EIVGKRIR ++DGS+++KV LD     NVE K++TF+ VYK LT KDV FEFP
Sbjct:    4 SSAKIVKPNGEKPDEFESGISQALLELEMNS-DLKAQLRELNITAAKEIEVGGGRKAIIIFVPVPQLKSFQKIQVRLVRELEKKFSGKHVVFIAQRRILPKPTRKSRTKNKQKRPRSRTLTAVHDAILEDLVFPSEIVGKRIRVKLDGSRLIKVHLDKAQQNNVEHKVETFSGVYKKLTGKDVNFEFP 190          
BLAST of CX301117 vs. ExPASy Swiss-Prot
Match: RS7_XENLA (40S ribosomal protein S7 OS=Xenopus laevis GN=rps7 PE=2 SV=2)

HSP 1 Score: 223.016 bits (567), Expect = 1.113e-57
Identity = 114/188 (60.64%), Postives = 145/188 (77.13%), Query Frame = 1
Query:   46 SKSKIVKSNGATPDEFELNVAQEFANFEASATELKADLHDLHISAAKELEIDGGRKAIIIFVPFRQLRDFHKVQARLVRELEKKFSGRHVVLVAQRTILPKSINRSSAQ-KGPRPRSRTLTAVHEAVLEDIVYPTEIVGKRIRYRVDGSKILKVFLDPKDLVNVETKLDTFAKVYKSLTNKDVVFEFP 606
            + +KIVK NG  PDEFE  ++Q     E ++ +LKA L +L+I+AAKE+E+  GRKAIIIFVP  QL+ F K+Q RLVRELEKKFSG+HVV +AQR ILPK   +S  + K  RPRSRTLTAVH+A+LED+VYP+EIVG+RIR ++DGS+++KV LD     NVE K++TF+ VYK LT KDVVFEFP
Sbjct:    4 TSAKIVKPNGEKPDEFESGISQALLELEMNS-DLKAQLRELNITAAKEIEVGAGRKAIIIFVPVPQLKSFQKIQVRLVRELEKKFSGKHVVFIAQRRILPKPTRKSRTKNKQKRPRSRTLTAVHDAILEDLVYPSEIVGRRIRVKLDGSRLIKVHLDKAQQNNVEHKVETFSGVYKKLTGKDVVFEFP 190          
BLAST of CX301117 vs. ExPASy Swiss-Prot
Match: RS7_DANRE (40S ribosomal protein S7 OS=Danio rerio GN=rps7 PE=2 SV=1)

HSP 1 Score: 221.476 bits (563), Expect = 3.237e-57
Identity = 113/188 (60.11%), Postives = 143/188 (76.06%), Query Frame = 1
Query:   46 SKSKIVKSNGATPDEFELNVAQEFANFEASATELKADLHDLHISAAKELEIDGGRKAIIIFVPFRQLRDFHKVQARLVRELEKKFSGRHVVLVAQRTILPKSINRSSAQ-KGPRPRSRTLTAVHEAVLEDIVYPTEIVGKRIRYRVDGSKILKVFLDPKDLVNVETKLDTFAKVYKSLTNKDVVFEFP 606
            + +KIVK NG  PDEFE  ++Q     E ++ +LKA L +LHI+AAKE+E+ G RKAIIIFVP  QL+ F K+Q RLVRELEKKFSG+HVV +AQR ILPK   +S  + K  RPRSRTLT VH+A+LED+V+P+EIVGKRIR ++D S+++KV LD     NVE K++TFA VYK LT KDV+FEFP
Sbjct:    4 TSAKIVKPNGEKPDEFESGISQALLELEMNS-DLKAQLRELHITAAKEIEVGGSRKAIIIFVPVPQLKSFQKIQVRLVRELEKKFSGKHVVFIAQRRILPKPTRKSRTKNKQKRPRSRTLTNVHDAILEDLVFPSEIVGKRIRVKLDSSRLIKVHLDKAQQNNVEHKVETFAGVYKKLTGKDVIFEFP 190          
BLAST of CX301117 vs. ExPASy Swiss-Prot
Match: RS7_TAKRU (40S ribosomal protein S7 OS=Takifugu rubripes GN=rps7 PE=3 SV=1)

HSP 1 Score: 220.32 bits (560), Expect = 7.212e-57
Identity = 113/188 (60.11%), Postives = 144/188 (76.60%), Query Frame = 1
Query:   46 SKSKIVKSNGATPDEFELNVAQEFANFEASATELKADLHDLHISAAKELEIDGGRKAIIIFVPFRQLRDFHKVQARLVRELEKKFSGRHVVLVAQRTILPKSINRS-SAQKGPRPRSRTLTAVHEAVLEDIVYPTEIVGKRIRYRVDGSKILKVFLDPKDLVNVETKLDTFAKVYKSLTNKDVVFEFP 606
            + +KIVK NG  PDEFE  ++Q     E ++ +LKA L +L+I+AAKE+E+ G RKAIIIFVP  QL+ F K+Q RLVRELEKKFSG+HVV +AQR ILPK   +S S  K  RPRSRTLT+VH+A+LED+V+P+EIVGKRIR ++D S+++KV LD     NVE K++TF+ VYK LT KDVVFEFP
Sbjct:    4 TSAKIVKPNGEKPDEFESGISQALLELEMNS-DLKAQLRELNITAAKEIEVGGSRKAIIIFVPVPQLKSFQKIQVRLVRELEKKFSGKHVVFIAQRRILPKPTRKSRSKNKQKRPRSRTLTSVHDAILEDLVFPSEIVGKRIRVKMDSSRLIKVHLDKAQQNNVEHKVETFSGVYKKLTGKDVVFEFP 190          
BLAST of CX301117 vs. ExPASy Swiss-Prot
Match: RS7_AVIMR (40S ribosomal protein S7 OS=Avicennia marina GN=RPS7 PE=2 SV=1)

HSP 1 Score: 214.542 bits (545), Expect = 3.957e-55
Identity = 110/185 (59.46%), Postives = 140/185 (75.68%), Query Frame = 1
Query:   55 KIVKSNGATPDEFELNVAQEFANFEASATELKADLHDLHISAAKELEIDGGRKAIIIFVPFRQLRDFHKVQARLVRELEKKFSGRHVVLVAQRTILPKSINRSSAQKGPRPRSRTLTAVHEAVLEDIVYPTEIVGKRIRYRVDGSKILKVFLDPKDLVNVETKLDTFAKVYKSLTNKDVVFEFPV 609
            KI K   A P EFE NVAQ   +FE +  E+K+DL DL+I++A ++++ GG+KA++I VP+R  + F K+  RLVRELEKKFSG+ VVL+A R IL      S+ Q   RPRSRTLTAVH+A+LEDIVYP EIVGKR+RYR+DGSKI+KVFLDPK   + E KL+TFA VY+ L+ KDVVFEFP+
Sbjct:    7 KIHKDKDAEPTEFEENVAQALFDFENTNQEIKSDLKDLYINSALQIDVSGGKKAVVIHVPYRLRKSFRKIHPRLVRELEKKFSGKEVVLIATRRILRPPKKGSAVQ---RPRSRTLTAVHDAMLEDIVYPAEIVGKRVRYRLDGSKIMKVFLDPKAKNDTENKLETFAGVYRKLSGKDVVFEFPL 188          
The following BLAST results are available for this feature:
BLAST of CX301117 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 29
Match NameE-valueIdentityDescription
RS7_ICTPU4.994e-5861.7040S ribosomal protein S7 OS=Ictalurus punctatus GN... [more]
RS7_RAT8.519e-5861.1740S ribosomal protein S7 OS=Rattus norvegicus GN=R... [more]
RS7_MOUSE8.519e-5861.1740S ribosomal protein S7 OS=Mus musculus GN=Rps7 P... [more]
RS7_HUMAN8.519e-5861.1740S ribosomal protein S7 OS=Homo sapiens GN=RPS7 P... [more]
RS7_FELCA8.519e-5861.1740S ribosomal protein S7 OS=Felis catus GN=RPS7 PE... [more]
RS7_BOVIN8.519e-5861.1740S ribosomal protein S7 OS=Bos taurus GN=RPS7 PE=... [more]
RS7_XENLA1.113e-5760.6440S ribosomal protein S7 OS=Xenopus laevis GN=rps7... [more]
RS7_DANRE3.237e-5760.1140S ribosomal protein S7 OS=Danio rerio GN=rps7 PE... [more]
RS7_TAKRU7.212e-5760.1140S ribosomal protein S7 OS=Takifugu rubripes GN=r... [more]
RS7_AVIMR3.957e-5559.4640S ribosomal protein S7 OS=Avicennia marina GN=RP... [more]

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Properties
Property NameValue
Genbank descriptionC08005H12SK PhyRootSw1 Citrus sinensis cDNA clone C08005H12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX301117 ID=CX301117; Name=CX301117; organism=Citrus sinensis; type=EST; length=674bp
GGAATTCGGCACGAGGGCTAATTCCATTTATTCTAAGGAAGAATGTCAAA
GAGTAAAATCGTCAAATCCAACGGAGCCACTCCTGATGAGTTCGAATTAA
ACGTCGCTCAAGAGTTCGCCAACTTCGAGGCTTCTGCTACTGAATTGAAG
GCAGATCTTCATGATTTACACATCTCTGCCGCTAAGGAGTTAGAGATTGA
TGGTGGACGCAAGGCTATCATCATCTTCGTTCCTTTCCGCCAATTGAGAG
ATTTCCATAAGGTTCAAGCTCGTTTAGTCCGTGAACTTGAGAAGAAGTTC
AGCGGAAGACACGTTGTCCTTGTTGCTCAACGCACCATCTTACCAAAGTC
CATCAACAGATCCTCTGCCCAAAAGGGTCCTCGCCCAAGATCCCGCACCT
TAACCGCTGTTCACGAGGCTGTCTTGGAGGATATCGTCTATCCAACTGAA
ATTGTCGGAAAGAGAATAAGATACAGAGTCGATGGAAGCAAGATCTTAAA
GGTCTTCTTGGATCCTAAGGATTTAGTCAACGTTGAAACCAAGTTAGATA
CCTTCGCCAAAGTCTATAAATCTTTGACCAACAAGGATGTTGTCTTTGAA
TTCCCAGTTGAAAACCCATAAATTAAAAGCTTCCTATGAAGTAAACGGCG
TTGTTAATTGTAGACCATGTTAAA
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