CX301108

Overview
NameCX301108
Unique NameCX301108
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length718
Libraries
Library NameType
PhyRootSw1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX301108 vs. ExPASy Swiss-Prot
Match: RL17A_SCHPO (60S ribosomal protein L17-A OS=Schizosaccharomyces pombe GN=rpl17a PE=2 SV=1)

HSP 1 Score: 174.866 bits (442), Expect = 3.897e-43
Identity = 88/184 (47.83%), Postives = 122/184 (66.30%), Query Frame = 2
Query:   26 MGRYSAKPKVETKAAKASGTHLRIHYKHTREIGNAIKGRALKNAQEYLENVLQFKDAIPVTKYTGGIGRHAIGKKYKAPGDKVSWPQKATRTFLDLLKNVESNAEAKGLEVDKLVVSHVNCNQAPKMRRRTYRAHGRINAYMSSPAHIQLIXXXXXXXXXXXXXPTAARLSRKQIAQGRGKSVK 577
            M RYSA P +ETK AKA G +LR H+K++RE+   I G +LK A  +L+NV + K A+P  ++ GG+GR A GK++     +  WP K+ + F DLLKN E+NAEAKGL++DKL++ HV  N APK RRRTYRAHGR+ AY+SSP+HI++I              T +R+S KQ A+ R  + +
Sbjct:    1 MVRYSASPALETKCAKARGAYLRTHFKNSREVAFTINGMSLKKAFIFLDNVKEHKQAVPFRRFNGGVGRTAQGKEFGVT--QARWPVKSVKFFYDLLKNAEANAEAKGLDMDKLIIKHVQVNAAPKQRRRTYRAHGRVTAYLSSPSHIEII-VAEEEEAVPKANDTVSRVSLKQGAKARNLAAR 181          
BLAST of CX301108 vs. ExPASy Swiss-Prot
Match: RL17B_SCHPO (60S ribosomal protein L17-B OS=Schizosaccharomyces pombe GN=rpl17b PE=2 SV=1)

HSP 1 Score: 172.555 bits (436), Expect = 1.934e-42
Identity = 88/184 (47.83%), Postives = 120/184 (65.22%), Query Frame = 2
Query:   26 MGRYSAKPKVETKAAKASGTHLRIHYKHTREIGNAIKGRALKNAQEYLENVLQFKDAIPVTKYTGGIGRHAIGKKYKAPGDKVSWPQKATRTFLDLLKNVESNAEAKGLEVDKLVVSHVNCNQAPKMRRRTYRAHGRINAYMSSPAHIQLIXXXXXXXXXXXXXPTAARLSRKQIAQGRGKSVK 577
            M RYSA P +ETK AKA G +LR H+K++RE+   I G  LK A  +L+NV + K A+P  ++ GG+GR A GK++     +  WP K+   F DLLKN E+NAEAKGL++DKL++ HV  N APK RRRTYRAHGR+ AY+SSP+HI++I              T +R+S KQ A+ R  + +
Sbjct:    1 MVRYSAAPALETKCAKARGAYLRTHFKNSREVAFTINGMNLKKAFIFLDNVKEHKQAVPFRRFNGGVGRTAQGKEFGVT--QARWPVKSVNFFYDLLKNAEANAEAKGLDMDKLIIKHVQVNAAPKQRRRTYRAHGRVTAYLSSPSHIEII-VAEEEEAVPKANDTVSRVSLKQGAKARNLAAR 181          
BLAST of CX301108 vs. ExPASy Swiss-Prot
Match: RL17_PHLPP (60S ribosomal protein L17 OS=Phlebotomus papatasi GN=RpL17 PE=2 SV=1)

HSP 1 Score: 171.4 bits (433), Expect = 4.308e-42
Identity = 83/186 (44.62%), Postives = 124/186 (66.67%), Query Frame = 2
Query:   26 MGRYSAKPKVETKAAKASGTHLRIHYKHTREIGNAIKGRALKNAQEYLENVLQFKDAIPVTKYTGGIGRHAIGKKYKAPGDKVSWPQKATRTFLDLLKNVESNAEAKGLEVDKLVVSHVNCNQAPKMRRRTYRAHGRINAYMSSPAHIQLI--XXXXXXXXXXXXXPTAARLSRKQIAQGRGKSVK 577
            MGRY+ +P   TK+ K+ G+HLR+H+K+T E  NAIK   L+ AQ +L+NV++ K+ +P  ++ GG+GR A  K++K    +  WP+K+    L LL+N ESNA+ KGL+VD+LV+ H+  N+AP +RRRTYRAHGRIN YMSSP HI++I               PT  +LS+K++ + + K ++
Sbjct:    1 MGRYAREPDNATKSCKSRGSHLRVHFKNTHEAANAIKHMPLRRAQRFLKNVVEKKECVPFRRFNGGVGRCAQAKQWKTTQGR--WPKKSAEFLLQLLRNAESNADYKGLDVDRLVIDHIQVNRAPCLRRRTYRAHGRINPYMSSPCHIEVILTEKEEVVAKATDEEPTKKKLSKKKLQRQKEKMMR 184          
BLAST of CX301108 vs. ExPASy Swiss-Prot
Match: RL17_IXOSC (60S ribosomal protein L17 OS=Ixodes scapularis GN=RpL17 PE=2 SV=1)

HSP 1 Score: 169.474 bits (428), Expect = 1.637e-41
Identity = 80/151 (52.98%), Postives = 108/151 (71.52%), Query Frame = 2
Query:   26 MGRYSAKPKVETKAAKASGTHLRIHYKHTREIGNAIKGRALKNAQEYLENVLQFKDAIPVTKYTGGIGRHAIGKKYKAPGDKVSWPQKATRTFLDLLKNVESNAEAKGLEVDKLVVSHVNCNQAPKMRRRTYRAHGRINAYMSSPAHIQLI 478
            MGRYS +P   TK+ KA G++LR+H+K+TRE   AIK  AL+ AQ YL+NV+  K+ +P  ++ GG+GR A  K +     +  WP+K+      LL+N ESNA+ KGL+VD+LV+ H+  N+APKMRRRTYRAHGRIN YMSSP HI++I
Sbjct:    1 MGRYSVEPDNATKSCKARGSNLRVHFKNTRETAQAIKHMALRRAQRYLKNVIAKKEIVPFRRFNGGVGRKAQAKAFGCTQGR--WPKKSAEFLWQLLRNAESNADYKGLDVDRLVIDHIQVNRAPKMRRRTYRAHGRINPYMSSPCHIEVI 149          
BLAST of CX301108 vs. ExPASy Swiss-Prot
Match: RL17_ARGMO (60S ribosomal protein L17 OS=Argas monolakensis GN=RpL17 PE=2 SV=1)

HSP 1 Score: 167.548 bits (423), Expect = 6.221e-41
Identity = 78/151 (51.66%), Postives = 108/151 (71.52%), Query Frame = 2
Query:   26 MGRYSAKPKVETKAAKASGTHLRIHYKHTREIGNAIKGRALKNAQEYLENVLQFKDAIPVTKYTGGIGRHAIGKKYKAPGDKVSWPQKATRTFLDLLKNVESNAEAKGLEVDKLVVSHVNCNQAPKMRRRTYRAHGRINAYMSSPAHIQLI 478
            MGRYS +P   TK+ KA G++LR+H+K+TRE   AIK  +L+ AQ YL+NV+  K+ +P  ++ GG+GR A  K +     +  WP+K+      LL+N ESNA+ KGL+VD+LV+ H+  N+APKMRRRTYRAHGRIN YMSSP H+++I
Sbjct:    1 MGRYSVEPDNATKSCKARGSNLRVHFKNTRETAQAIKRMSLRRAQRYLKNVIAKKEIVPFRRFNGGVGRKAQAKAWGCTQGR--WPKKSAEFLWQLLRNAESNADYKGLDVDRLVIDHIQVNRAPKMRRRTYRAHGRINPYMSSPCHVEVI 149          
BLAST of CX301108 vs. ExPASy Swiss-Prot
Match: RL17_SUBDO (60S ribosomal protein L17 OS=Suberites domuncula GN=RPL17 PE=2 SV=1)

HSP 1 Score: 166.777 bits (421), Expect = 1.061e-40
Identity = 82/189 (43.39%), Postives = 118/189 (62.43%), Query Frame = 2
Query:   26 MGRYSAKPKVETKAAKASGTHLRIHYKHTREIGNAIKGRALKNAQEYLENVLQFKDAIPVTKYTGGIGRHAIGKKYKAPGDKVSWPQKATRTFLDLLKNVESNAEAKGLEVDKLVVSHVNCNQAPKMRRRTYRAHGRINAYMSSPAHIQLIXXXXXXXXXXXXXPTA--ARLSRKQIAQGRGKSVKVGG 586
            MGRY+ +P+   K+ KA G  LR+H+K+TRE   AIKG  LK A  YL +V++ K  IP  +++GG+GR A  K +K PG +  WP+K+ +  + LL+N ESNAE K L  D LV+ H+  N+A  +RRRTYRAHGRIN YM+SP HI++               TA   ++S+K++ + + K+   GG
Sbjct:    1 MGRYAIEPENPAKSCKARGEDLRVHFKNTRETAQAIKGMHLKKALRYLNDVIEKKQIIPFRRFSGGVGRKAQAKNFKTPGSQGRWPKKSAQFLIQLLRNAESNAEVKMLNTDALVIDHIQVNRAAHLRRRTYRAHGRINPYMTSPCHIEMFLVEKDEAVPKGEDDTAQKKKVSQKKLKKQKLKAALSGG 189          
BLAST of CX301108 vs. ExPASy Swiss-Prot
Match: RL17_MAIZE (60S ribosomal protein L17 OS=Zea mays GN=RPL17 PE=2 SV=1)

HSP 1 Score: 163.696 bits (413), Expect = 8.983e-40
Identity = 84/151 (55.63%), Postives = 103/151 (68.21%), Query Frame = 2
Query:   26 MGRYSAKPKVETKAAKASGTHLRIHYKHTREIGNAIKGRALKNAQEYLENVLQFKDAIPVTKYTGGIGRHAIGKKYKAPGDKVSWPQKATRTFLDLLKNVESNAEAKGLEVDKLVVSHVNCNQAPKMRRRTYRAHGRINAYMSSPAHIQLI 478
            M +YS +P   TK+AKA G  LR+H+K+TRE   A++   L  A+ YLE+V+  K AIP  +Y GG+GR A  K   + G    WP K+ R  LDLLKN ESNA+ KGL+VD L VSH+  NQA K RRRTYRAHGRIN YMSSP HI+LI
Sbjct:    1 MVKYSQEPGNPTKSAKAMGRDLRVHFKNTRETAFALRKLPLTKAKRYLEDVIAHKQAIPFRRYCGGVGRTAQAKSRHSNGQG-RWPVKSARFILDLLKNAESNADVKGLDVDNLYVSHIQVNQAQKQRRRTYRAHGRINPYMSSPCHIELI 150          
BLAST of CX301108 vs. ExPASy Swiss-Prot
Match: RL17_NEUCR (60S ribosomal protein L17 OS=Neurospora crassa GN=rpl-17 PE=3 SV=1)

HSP 1 Score: 162.54 bits (410), Expect = 2.001e-39
Identity = 79/151 (52.32%), Postives = 106/151 (70.20%), Query Frame = 2
Query:   26 MGRYSAKPKVETKAAKASGTHLRIHYKHTREIGNAIKGRALKNAQEYLENVLQFKDAIPVTKYTGGIGRHAIGKKYKAPGDKVSWPQKATRTFLDLLKNVESNAEAKGLEVDKLVVSHVNCNQAPKMRRRTYRAHGRINAYMSSPAHIQLI 478
            M RY+A      K+A++ G++LR+ +K+TRE   AI G  L+ AQ++LENVL+ K+A+P+ +Y GG GR A GK++     +  WP K+    L LLKN E+NA+AKGL+   LVV H+  NQAPK RRRTYRAHGRIN YMS+P HI+LI
Sbjct:    1 MVRYAATEIAPAKSARSRGSYLRVSFKNTRETAQAINGWKLQRAQKFLENVLEKKEAVPMRRYAGGTGRAAQGKQFGV--SRARWPAKSAEFLLGLLKNAEANADAKGLDTGNLVVKHIQVNQAPKQRRRTYRAHGRINPYMSNPCHIELI 149          
BLAST of CX301108 vs. ExPASy Swiss-Prot
Match: RL17_RAT (60S ribosomal protein L17 OS=Rattus norvegicus GN=Rpl17 PE=2 SV=3)

HSP 1 Score: 162.155 bits (409), Expect = 2.614e-39
Identity = 78/151 (51.66%), Postives = 106/151 (70.20%), Query Frame = 2
Query:   26 MGRYSAKPKVETKAAKASGTHLRIHYKHTREIGNAIKGRALKNAQEYLENVLQFKDAIPVTKYTGGIGRHAIGKKYKAPGDKVSWPQKATRTFLDLLKNVESNAEAKGLEVDKLVVSHVNCNQAPKMRRRTYRAHGRINAYMSSPAHIQLI 478
            M RYS  P+  TK+ K+ G++LR+H+K+TRE   AIKG  ++ A +YL++V   K  +P  +Y GG+GR A  K++     +  WP+K+    L +LKN ESNAE KGL+VD LV+ H+  N+APKMRRRTYRAHGRIN YMSSP HI++I
Sbjct:    1 MVRYSLDPENPTKSCKSRGSNLRVHFKNTRETAQAIKGMHIRKATKYLKDVTLKKQCVPFRRYNGGVGRCAQAKQWGWTQGR--WPKKSAEFLLHMLKNAESNAELKGLDVDSLVIEHIQVNKAPKMRRRTYRAHGRINPYMSSPCHIEMI 149          
BLAST of CX301108 vs. ExPASy Swiss-Prot
Match: RL17_MOUSE (60S ribosomal protein L17 OS=Mus musculus GN=Rpl17 PE=2 SV=3)

HSP 1 Score: 162.155 bits (409), Expect = 2.614e-39
Identity = 78/151 (51.66%), Postives = 106/151 (70.20%), Query Frame = 2
Query:   26 MGRYSAKPKVETKAAKASGTHLRIHYKHTREIGNAIKGRALKNAQEYLENVLQFKDAIPVTKYTGGIGRHAIGKKYKAPGDKVSWPQKATRTFLDLLKNVESNAEAKGLEVDKLVVSHVNCNQAPKMRRRTYRAHGRINAYMSSPAHIQLI 478
            M RYS  P+  TK+ K+ G++LR+H+K+TRE   AIKG  ++ A +YL++V   K  +P  +Y GG+GR A  K++     +  WP+K+    L +LKN ESNAE KGL+VD LV+ H+  N+APKMRRRTYRAHGRIN YMSSP HI++I
Sbjct:    1 MVRYSLDPENPTKSCKSRGSNLRVHFKNTRETAQAIKGMHIRKATKYLKDVTLKKQCVPFRRYNGGVGRCAQAKQWGWTQGR--WPKKSAEFLLHMLKNAESNAELKGLDVDSLVIEHIQVNKAPKMRRRTYRAHGRINPYMSSPCHIEMI 149          
The following BLAST results are available for this feature:
BLAST of CX301108 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 85
Match NameE-valueIdentityDescription
RL17A_SCHPO3.897e-4347.8360S ribosomal protein L17-A OS=Schizosaccharomyces... [more]
RL17B_SCHPO1.934e-4247.8360S ribosomal protein L17-B OS=Schizosaccharomyces... [more]
RL17_PHLPP4.308e-4244.6260S ribosomal protein L17 OS=Phlebotomus papatasi ... [more]
RL17_IXOSC1.637e-4152.9860S ribosomal protein L17 OS=Ixodes scapularis GN=... [more]
RL17_ARGMO6.221e-4151.6660S ribosomal protein L17 OS=Argas monolakensis GN... [more]
RL17_SUBDO1.061e-4043.3960S ribosomal protein L17 OS=Suberites domuncula G... [more]
RL17_MAIZE8.983e-4055.6360S ribosomal protein L17 OS=Zea mays GN=RPL17 PE=... [more]
RL17_NEUCR2.001e-3952.3260S ribosomal protein L17 OS=Neurospora crassa GN=... [more]
RL17_RAT2.614e-3951.6660S ribosomal protein L17 OS=Rattus norvegicus GN=... [more]
RL17_MOUSE2.614e-3951.6660S ribosomal protein L17 OS=Mus musculus GN=Rpl17... [more]

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Properties
Property NameValue
Genbank descriptionC08005H01SK PhyRootSw1 Citrus sinensis cDNA clone C08005H01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX301108 ID=CX301108; Name=CX301108; organism=Citrus sinensis; type=EST; length=718bp
GCCTCGTGCCGAATTCGGCACGAGGATGGGACGCTACAGTGCTAAGCCAA
AGGTTGAAACAAAAGCAGCAAAAGCTTCTGGAACTCATTTAAGAATCCAT
TACAAACACACCCGCGAGATTGGTAATGCCATCAAGGGACGTGCTTTGAA
GAATGCCCAAGAGTACTTGGAAAATGTCCTTCAATTCAAGGATGCCATTC
CAGTCACTAAATACACTGGTGGTATCGGCAGACACGCCATCGGTAAGAAG
TACAAGGCCCCTGGAGACAAGGTGTCTTGGCCACAGAAGGCTACCCGAAC
TTTCCTCGATTTATTGAAGAACGTCGAGTCTAACGCCGAAGCCAAGGGAT
TGGAGGTTGATAAGTTAGTTGTTTCTCACGTTAACTGCAACCAGGCCCCT
AAGATGAGACGAAGAACATACAGAGCTCACGGCCGCATCAACGCATACAT
GTCCTCCCCTGCCCACATTCAATTAATCGTTGAGGAGAAGCAAGAGGAAG
TCGCCAAGGCCGAGGAACCAACTGCTGCTCGCTTATCTCGCAAGCAAATC
GCTCAAGGTCGTGGAAAGTCTGTGAAGGTTGGAGGTGATGTTTAAATATA
TACATCGCAATCACCTCACTGTATTATATTCTCTGCCTTAATCACTGCTA
GCCTCACATGTAATACTAGCTCAACTATTAACATCCCATGATGACTGATG
AAATAACTAGTTGTAACA
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