CX301099

Overview
NameCX301099
Unique NameCX301099
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length577
Libraries
Library NameType
PhyRootSw1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2749 contig Csv1_Contig2749:131..708. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX301099 vs. ExPASy Swiss-Prot
Match: TPIS_PETHY (Triosephosphate isomerase, cytosolic OS=Petunia hybrida GN=TPIP1 PE=2 SV=1)

HSP 1 Score: 187.193 bits (474), Expect = 4.978e-47
Identity = 90/107 (84.11%), Postives = 99/107 (92.52%), Query Frame = 1
Query:   16 ETKAIAEKISNWDNVVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLKDNVSAEVAASTRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKPEFIDIIKSATVKKN 336
            +TKAIA+++ +W NVV+AYEPVWAIGTGKVA+PAQAQEVHAELRKWL  NVS EVAASTRIIYGGSVNGANCKEL  QPDVDGFLVGGASLKPEFIDIIK+A VK+N
Sbjct:  147 QTKAIADRVKDWTNVVVAYEPVWAIGTGKVASPAQAQEVHAELRKWLAANVSPEVAASTRIIYGGSVNGANCKELGGQPDVDGFLVGGASLKPEFIDIIKAAEVKRN 253          
BLAST of CX301099 vs. ExPASy Swiss-Prot
Match: TPIS_LACSA (Triosephosphate isomerase, cytosolic (Fragment) OS=Lactuca sativa PE=2 SV=1)

HSP 1 Score: 186.037 bits (471), Expect = 1.109e-46
Identity = 91/107 (85.05%), Postives = 100/107 (93.46%), Query Frame = 1
Query:   16 ETKAIAEKISNWDNVVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLKDNVSAEVAASTRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKPEFIDIIKSATVKKN 336
            +TKAIA+KIS+WDNVVLAYEPVWAIGTGKVA+PAQAQEVHA LRKW  DNVSAEV+ASTRIIYGGSV+G+NCKEL  Q DVDGFLVGGASLKPEFIDIIK+A VKK+
Sbjct:   88 QTKAIADKISSWDNVVLAYEPVWAIGTGKVASPAQAQEVHAGLRKWFCDNVSAEVSASTRIIYGGSVSGSNCKELGGQTDVDGFLVGGASLKPEFIDIIKAAEVKKS 194          
BLAST of CX301099 vs. ExPASy Swiss-Prot
Match: TPIS_COPJA (Triosephosphate isomerase, cytosolic OS=Coptis japonica PE=2 SV=1)

HSP 1 Score: 184.882 bits (468), Expect = 2.471e-46
Identity = 87/107 (81.31%), Postives = 99/107 (92.52%), Query Frame = 1
Query:   16 ETKAIAEKISNWDNVVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLKDNVSAEVAASTRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKPEFIDIIKSATVKKN 336
            +TKAIAEK+S+W N+V+AYEPVWAIGTGKVA+PAQAQEVH ELRKW+K+NV A+VA S RIIYGGSVNGAN KELA QPD+DGFLVGGASLKPEF+DIIKSATVK +
Sbjct:  147 QTKAIAEKVSDWTNIVVAYEPVWAIGTGKVASPAQAQEVHFELRKWIKENVGADVAGSVRIIYGGSVNGANSKELAGQPDIDGFLVGGASLKPEFVDIIKSATVKSS 253          
BLAST of CX301099 vs. ExPASy Swiss-Prot
Match: TPIS_SECCE (Triosephosphate isomerase, cytosolic OS=Secale cereale PE=2 SV=3)

HSP 1 Score: 183.341 bits (464), Expect = 7.189e-46
Identity = 90/106 (84.91%), Postives = 97/106 (91.51%), Query Frame = 1
Query:   13 EETKAIAEKISNWDNVVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLKDNVSAEVAASTRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKPEFIDIIKSATVK 330
            E+TKAIA+KI +W NVV+AYEPVWAIGTGKVA+PAQAQEVHA LR WLK NVS EVA STRIIYGGSV GA+CKELAAQPDVDGFLVGGASLKPEFIDII +ATVK
Sbjct:  146 EQTKAIADKIKDWTNVVVAYEPVWAIGTGKVASPAQAQEVHANLRDWLKTNVSPEVAESTRIIYGGSVTGASCKELAAQPDVDGFLVGGASLKPEFIDIINAATVK 251          
BLAST of CX301099 vs. ExPASy Swiss-Prot
Match: TPIS_MAIZE (Triosephosphate isomerase, cytosolic OS=Zea mays PE=3 SV=3)

HSP 1 Score: 182.57 bits (462), Expect = 1.226e-45
Identity = 90/105 (85.71%), Postives = 94/105 (89.52%), Query Frame = 1
Query:   16 ETKAIAEKISNWDNVVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLKDNVSAEVAASTRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKPEFIDIIKSATVK 330
            +TKAIAEKI +W NVV+AYEPVWAIGTGKVATPAQAQEVHA LR WLK N S EVA STRIIYGGSV  ANCKELAAQPDVDGFLVGGASLKPEFIDII +ATVK
Sbjct:  147 QTKAIAEKIKDWSNVVVAYEPVWAIGTGKVATPAQAQEVHASLRDWLKTNASPEVAESTRIIYGGSVTAANCKELAAQPDVDGFLVGGASLKPEFIDIINAATVK 251          
BLAST of CX301099 vs. ExPASy Swiss-Prot
Match: TPIS_ARATH (Triosephosphate isomerase, cytosolic OS=Arabidopsis thaliana GN=CTIMC PE=1 SV=2)

HSP 1 Score: 182.57 bits (462), Expect = 1.226e-45
Identity = 87/107 (81.31%), Postives = 98/107 (91.59%), Query Frame = 1
Query:   16 ETKAIAEKISNWDNVVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLKDNVSAEVAASTRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKPEFIDIIKSATVKKN 336
            +TKAIA++++NW NVV+AYEPVWAIGTGKVA+PAQAQEVH ELRKWL  NVSA+VAA+TRIIYGGSVNG NCKEL  Q DVDGFLVGGASLKPEFIDIIK+A VKK+
Sbjct:  147 QTKAIADRVTNWSNVVIAYEPVWAIGTGKVASPAQAQEVHDELRKWLAKNVSADVAATTRIIYGGSVNGGNCKELGGQADVDGFLVGGASLKPEFIDIIKAAEVKKS 253          
BLAST of CX301099 vs. ExPASy Swiss-Prot
Match: TPIS_ORYSJ (Triosephosphate isomerase, cytosolic OS=Oryza sativa subsp. japonica GN=TPI PE=1 SV=3)

HSP 1 Score: 179.489 bits (454), Expect = 1.038e-44
Identity = 89/105 (84.76%), Postives = 95/105 (90.48%), Query Frame = 1
Query:   16 ETKAIAEKISNWDNVVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLKDNVSAEVAASTRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKPEFIDIIKSATVK 330
            +TKAI+E+I +W NVV+AYEPVWAIGTGKVATP QAQEVH  LRKWL  NVSAEVA STRIIYGGSV GANCKELAA+PDVDGFLVGGASLKPEFIDII SATVK
Sbjct:  147 QTKAISERIKDWTNVVVAYEPVWAIGTGKVATPDQAQEVHDGLRKWLAANVSAEVAESTRIIYGGSVTGANCKELAAKPDVDGFLVGGASLKPEFIDIINSATVK 251          
BLAST of CX301099 vs. ExPASy Swiss-Prot
Match: TPIS_HORVU (Triosephosphate isomerase, cytosolic OS=Hordeum vulgare PE=1 SV=3)

HSP 1 Score: 176.022 bits (445), Expect = 1.148e-43
Identity = 88/106 (83.02%), Postives = 93/106 (87.74%), Query Frame = 1
Query:   13 EETKAIAEKISNWDNVVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLKDNVSAEVAASTRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKPEFIDIIKSATVK 330
            E+TKAIA KI +W N V+AYEPVWAIGTGKVATPAQAQEVHA LR WLK NVS EVA STRIIYGGSV GA+CKELAAQ DVDGFLVGGASLKPEFIDII +A VK
Sbjct:  146 EQTKAIAGKIKDWSNGVVAYEPVWAIGTGKVATPAQAQEVHANLRDWLKTNVSPEVAESTRIIYGGSVTGASCKELAAQADVDGFLVGGASLKPEFIDIINAAAVK 251          
BLAST of CX301099 vs. ExPASy Swiss-Prot
Match: TPIS_MACMU (Triosephosphate isomerase OS=Macaca mulatta GN=TPI1 PE=3 SV=2)

HSP 1 Score: 164.081 bits (414), Expect = 4.513e-40
Identity = 78/102 (76.47%), Postives = 86/102 (84.31%), Query Frame = 1
Query:   13 EETKAIAEKISNWDNVVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLKDNVSAEVAASTRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKPEFIDIIKS 318
            E+TK IA+ + +W  VVLAYEPVWAIGTGK ATP QAQEVH +LR WLK NVS  VA STRIIYGGSV GA CKELA+QPDVDGFLVGGASLKPEF+DII +
Sbjct:  146 EQTKVIADNVKDWSKVVLAYEPVWAIGTGKTATPQQAQEVHEKLRGWLKSNVSEAVAQSTRIIYGGSVTGATCKELASQPDVDGFLVGGASLKPEFVDIINA 247          
BLAST of CX301099 vs. ExPASy Swiss-Prot
Match: TPIS_MACFA (Triosephosphate isomerase OS=Macaca fascicularis GN=TPI1 PE=2 SV=3)

HSP 1 Score: 164.081 bits (414), Expect = 4.513e-40
Identity = 78/102 (76.47%), Postives = 86/102 (84.31%), Query Frame = 1
Query:   13 EETKAIAEKISNWDNVVLAYEPVWAIGTGKVATPAQAQEVHAELRKWLKDNVSAEVAASTRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKPEFIDIIKS 318
            E+TK IA+ + +W  VVLAYEPVWAIGTGK ATP QAQEVH +LR WLK NVS  VA STRIIYGGSV GA CKELA+QPDVDGFLVGGASLKPEF+DII +
Sbjct:  146 EQTKVIADNVKDWSKVVLAYEPVWAIGTGKTATPQQAQEVHEKLRGWLKSNVSEAVAQSTRIIYGGSVTGATCKELASQPDVDGFLVGGASLKPEFVDIINA 247          
The following BLAST results are available for this feature:
BLAST of CX301099 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
TPIS_PETHY4.978e-4784.11Triosephosphate isomerase, cytosolic OS=Petunia hy... [more]
TPIS_LACSA1.109e-4685.05Triosephosphate isomerase, cytosolic (Fragment) OS... [more]
TPIS_COPJA2.471e-4681.31Triosephosphate isomerase, cytosolic OS=Coptis jap... [more]
TPIS_SECCE7.189e-4684.91Triosephosphate isomerase, cytosolic OS=Secale cer... [more]
TPIS_MAIZE1.226e-4585.71Triosephosphate isomerase, cytosolic OS=Zea mays P... [more]
TPIS_ARATH1.226e-4581.31Triosephosphate isomerase, cytosolic OS=Arabidopsi... [more]
TPIS_ORYSJ1.038e-4484.76Triosephosphate isomerase, cytosolic OS=Oryza sati... [more]
TPIS_HORVU1.148e-4383.02Triosephosphate isomerase, cytosolic OS=Hordeum vu... [more]
TPIS_MACMU4.513e-4076.47Triosephosphate isomerase OS=Macaca mulatta GN=TPI... [more]
TPIS_MACFA4.513e-4076.47Triosephosphate isomerase OS=Macaca fascicularis G... [more]

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Properties
Property NameValue
Genbank descriptionC08005G03SK PhyRootSw1 Citrus sinensis cDNA clone C08005G03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX301099 ID=CX301099; Name=CX301099; organism=Citrus sinensis; type=EST; length=577bp
GGAATTCGGCACGAGGAAACAAAAGCAATCGCAGAAAAAATATCCAACTG
GGACAATGTTGTGTTGGCTTATGAGCCAGTTTGGGCCATTGGTACCGGGA
AGGTTGCAACCCCTGCTCAGGCTCAGGAAGTCCATGCTGAACTGAGGAAA
TGGCTTAAAGACAATGTCAGTGCTGAAGTTGCAGCATCAACTAGAATCAT
CTACGGAGGTTCTGTAAATGGAGCAAATTGCAAAGAATTGGCAGCACAAC
CTGATGTAGATGGATTTTTGGTTGGTGGAGCTTCTCTAAAGCCGGAGTTC
ATCGATATTATCAAGTCTGCCACAGTGAAGAAGAATTGAAGTTAAGACCA
AGCTACTCGGCTTGCTGATGCCTGCAGTTTTCTCTGTTATGCTTTCTGGA
AACTAGCGTTGTAATTTTTGTGGTCTGTTAAGTGTTACCAACGCCTTTCG
AGTATAATAAGTTAAATTTTCAGAATTGTTAAGAATCTCTTTCCTATTTC
AGTGGGGATTTGAAACTTATCATTGTGGATTTAATAAATGTTTGCTTTTC
CCTTCTTGCAAAAAAAAAAAAAAAAAA
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