CX301097

Overview
NameCX301097
Unique NameCX301097
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length532
Libraries
Library NameType
PhyRootSw1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig7623 contig Csv1_Contig7623:599..1130. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX301097 vs. ExPASy Swiss-Prot
Match: P2C59_ARATH (Probable protein phosphatase 2C 59 OS=Arabidopsis thaliana GN=WIN2 PE=1 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 9.475e-15
Identity = 38/47 (80.85%), Postives = 41/47 (87.23%), Query Frame = 1
Query:   19 NEEAVAMIKPIQDPEEAAKRLMQEAYQRGSADNITCVVVRFLANQGG 159
            NEEAV MIK I+DPEE AKRLM EAYQRGSADNITCVVVRF ++Q G
Sbjct:  239 NEEAVGMIKAIEDPEEGAKRLMMEAYQRGSADNITCVVVRFFSDQAG 285          
BLAST of CX301097 vs. ExPASy Swiss-Prot
Match: P2C10_ORYSJ (Probable protein phosphatase 2C 10 OS=Oryza sativa subsp. japonica GN=Os02g0149800 PE=2 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 6.791e-13
Identity = 34/42 (80.95%), Postives = 40/42 (95.24%), Query Frame = 1
Query:   19 NEEAVAMIKPIQDPEEAAKRLMQEAYQRGSADNITCVVVRFL 144
            N+EAV M++PIQDPE+AAKRL+QEAYQRGSADNIT V+VRFL
Sbjct:  288 NKEAVDMVRPIQDPEQAAKRLLQEAYQRGSADNITVVIVRFL 329          
BLAST of CX301097 vs. ExPASy Swiss-Prot
Match: P2C45_ORYSJ (Probable protein phosphatase 2C 45 OS=Oryza sativa subsp. japonica GN=Os04g0659500 PE=2 SV=2)

HSP 1 Score: 73.1738 bits (178), Expect = 8.869e-13
Identity = 35/50 (70.00%), Postives = 41/50 (82.00%), Query Frame = 1
Query:   19 NEEAVAMIKPIQDPEEAAKRLMQEAYQRGSADNITCVVVRFLANQGGSSF 168
            NEEAV M + I DPEEAAK+L+QEAY+R S+DNITCVVVRFL  QG S +
Sbjct:  232 NEEAVDMTRSIHDPEEAAKKLLQEAYKRESSDNITCVVVRFLHGQGSSGY 281          
BLAST of CX301097 vs. ExPASy Swiss-Prot
Match: P2C59_ORYSJ (Probable protein phosphatase 2C 59 OS=Oryza sativa subsp. japonica GN=Os06g0698300 PE=2 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 2.580e-12
Identity = 34/45 (75.56%), Postives = 40/45 (88.89%), Query Frame = 1
Query:   19 NEEAVAMIKPIQDPEEAAKRLMQEAYQRGSADNITCVVVRFLANQ 153
            NEEAVAM+KPI D E+AAK+L+QEA QRGSADNITC+VVRFL  +
Sbjct:  270 NEEAVAMVKPILDSEQAAKKLLQEASQRGSADNITCLVVRFLEQE 314          
BLAST of CX301097 vs. ExPASy Swiss-Prot
Match: P2C71_ARATH (Probable protein phosphatase 2C 71 OS=Arabidopsis thaliana GN=At5g24940 PE=2 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 9.806e-12
Identity = 35/53 (66.04%), Postives = 43/53 (81.13%), Query Frame = 1
Query:   19 NEEAVAMIKPIQDPEEAAKRLMQEAYQRGSADNITCVVVRFL----ANQGGSS 165
            NEEAVA++K ++DPEE+ K+L+ EA +RGSADNITCVVVRFL    AN  GSS
Sbjct:  239 NEEAVAVVKEVEDPEESTKKLVGEAIKRGSADNITCVVVRFLESKSANNNGSS 291          
BLAST of CX301097 vs. ExPASy Swiss-Prot
Match: P2C69_ARATH (Probable protein phosphatase 2C 69 OS=Arabidopsis thaliana GN=At5g10740 PE=2 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 1.673e-11
Identity = 32/49 (65.31%), Postives = 41/49 (83.67%), Query Frame = 1
Query:   19 NEEAVAMIKPIQDPEEAAKRLMQEAYQRGSADNITCVVVRFLANQGGSS 165
            NE AVAM+K ++DPE++AK+L+ EA +RGSADNITCVVVRFL  +  SS
Sbjct:  239 NEAAVAMVKEVEDPEDSAKKLVGEAIKRGSADNITCVVVRFLEKKSASS 287          
The following BLAST results are available for this feature:
BLAST of CX301097 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 6
Match NameE-valueIdentityDescription
P2C59_ARATH9.475e-1580.85Probable protein phosphatase 2C 59 OS=Arabidopsis ... [more]
P2C10_ORYSJ6.791e-1380.95Probable protein phosphatase 2C 10 OS=Oryza sativa... [more]
P2C45_ORYSJ8.869e-1370.00Probable protein phosphatase 2C 45 OS=Oryza sativa... [more]
P2C59_ORYSJ2.580e-1275.56Probable protein phosphatase 2C 59 OS=Oryza sativa... [more]
P2C71_ARATH9.806e-1266.04Probable protein phosphatase 2C 71 OS=Arabidopsis ... [more]
P2C69_ARATH1.673e-1165.31Probable protein phosphatase 2C 69 OS=Arabidopsis ... [more]
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Properties
Property NameValue
Genbank descriptionC08005G01SK PhyRootSw1 Citrus sinensis cDNA clone C08005G01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX301097 ID=CX301097; Name=CX301097; organism=Citrus sinensis; type=EST; length=532bp
CGAGGGGGATGTCGTCCAAATGAGGAAGCTGTTGCGATGATCAAACCAAT
CCAGGATCCAGAGGAGGCAGCGAAGAGGCTGATGCAGGAGGCATATCAGA
GAGGCAGCGCAGACAACATCACCTGTGTCGTTGTTCGGTTCTTGGCCAAT
CAAGGTGGTTCATCCTTTCCTGGCTCTGCATGAACATCCTTTCATAGCCA
CCGCTCTGCTTTTGTTCTCTACATGGGCATCCTTTCAGTGGTCTACAGCT
AGTAGTCATAGAAAAATTACAGTTTCGTTGTACTTTGTAATGATAGAACA
TGAACAAAAAGCTTACCCCGGCCGTTAATGTGTATTACGTATTATCAGTC
TCTGGAATAGATGTGTCCGAAGTTTAACATCTGTTCTCGGTCCTCGAAAT
GTAGCTAGAAATGTGTATGTATGCATGTGTAAAGAATTGGCAAAGACTTC
TAAAGTTTCAATTTCCTATGTTGTAAATGTAGATGAAACTCTTCTGTTGC
TCATNNNANAAAAAAAAAAAAAAAAAAAAAAA
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