CX301092

Overview
NameCX301092
Unique NameCX301092
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length617
Libraries
Library NameType
PhyRootSw1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig4971 contig Csv1_Contig4971:1..617. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX301092 vs. ExPASy Swiss-Prot
Match: KSG7_ARATH (Shaggy-related protein kinase eta OS=Arabidopsis thaliana GN=ASK7 PE=1 SV=2)

HSP 1 Score: 98.9821 bits (245), Expect = 2.039e-20
Identity = 43/56 (76.79%), Postives = 52/56 (92.86%), Query Frame = 3
Query:    3 DELREPNARLPNGRPFPPLFNFKQELAGASPELINRLIPEHVRRQTGLSMPHSAGT 170
            DELREPNARLPNGRPFPPLFNFKQE+AG+SPEL+N+LIP+H++RQ GLS  + +GT
Sbjct:  325 DELREPNARLPNGRPFPPLFNFKQEVAGSSPELVNKLIPDHIKRQLGLSFLNQSGT 380          
BLAST of CX301092 vs. ExPASy Swiss-Prot
Match: KSG6_ARATH (Shaggy-related protein kinase zeta OS=Arabidopsis thaliana GN=ASK6 PE=1 SV=2)

HSP 1 Score: 95.5153 bits (236), Expect = 2.254e-19
Identity = 45/55 (81.82%), Postives = 47/55 (85.45%), Query Frame = 3
Query:    3 DELREPNARLPNGRPFPPLFNFKQELAGASPELINRLIPEHVRRQTGLSMPHSAG 167
            +ELREPNARLPNGRP PPLFNFKQEL+GASPELINRLIPEHVRRQ     P  AG
Sbjct:  357 NELREPNARLPNGRPLPPLFNFKQELSGASPELINRLIPEHVRRQMNGGFPFQAG 411          
BLAST of CX301092 vs. ExPASy Swiss-Prot
Match: KSG9_ARATH (Shaggy-related protein kinase iota OS=Arabidopsis thaliana GN=ASK9 PE=2 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 2.110e-17
Identity = 42/53 (79.25%), Postives = 45/53 (84.91%), Query Frame = 3
Query:    3 DELREPNARLPNGRPFPPLFNFKQELAGASPELINRLIPEHVRRQTGLSMPHS 161
            +ELREPNARLPNGRP PPLFNFKQEL GAS ELINRLIPEHVRRQ    + +S
Sbjct:  355 NELREPNARLPNGRPLPPLFNFKQELGGASMELINRLIPEHVRRQMSTGLQNS 407          
BLAST of CX301092 vs. ExPASy Swiss-Prot
Match: KSG10_ARATH (Shaggy-related protein kinase kappa OS=Arabidopsis thaliana GN=ASK10 PE=1 SV=2)

HSP 1 Score: 78.9518 bits (193), Expect = 2.183e-14
Identity = 36/54 (66.67%), Postives = 42/54 (77.78%), Query Frame = 3
Query:    3 DELREPNARLPNGRPFPPLFNFK-QELAGASPELINRLIPEHVRRQTGLSMPHS 161
            DELR+PN RLPNGRP PPLFNFK QEL+G  PE++NRL+PEH R+Q      HS
Sbjct:  368 DELRDPNTRLPNGRPLPPLFNFKPQELSGIPPEIVNRLVPEHARKQNLFMALHS 421          
BLAST of CX301092 vs. ExPASy Swiss-Prot
Match: KSG4_ARATH (Shaggy-related protein kinase delta OS=Arabidopsis thaliana GN=ASK4 PE=2 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 3.724e-14
Identity = 36/54 (66.67%), Postives = 42/54 (77.78%), Query Frame = 3
Query:    3 DELREPNARLPNGRPFPPLFNFK-QELAGASPELINRLIPEHVRRQTGLSMPHS 161
            DELR+PNARLPNGRP PPLFNFK QEL+G  PE ++RL+PEH R+Q      HS
Sbjct:  367 DELRDPNARLPNGRPLPPLFNFKPQELSGIPPETVDRLVPEHARKQNHFMALHS 420          
BLAST of CX301092 vs. ExPASy Swiss-Prot
Match: KSG5_ARATH (Shaggy-related protein kinase epsilon OS=Arabidopsis thaliana GN=ASK5 PE=2 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 7.765e-12
Identity = 33/46 (71.74%), Postives = 39/46 (84.78%), Query Frame = 3
Query:    3 DELREPNARLPNGRPFPPLFNFK-QELAGASPELINRLIPEHVRRQ 137
            DELR+PN RLPNGR  PPLFNFK QEL GAS EL+++LIP+H R+Q
Sbjct:  359 DELRDPNTRLPNGRALPPLFNFKPQELKGASLELLSKLIPDHARKQ 404          
The following BLAST results are available for this feature:
BLAST of CX301092 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 6
Match NameE-valueIdentityDescription
KSG7_ARATH2.039e-2076.79Shaggy-related protein kinase eta OS=Arabidopsis t... [more]
KSG6_ARATH2.254e-1981.82Shaggy-related protein kinase zeta OS=Arabidopsis ... [more]
KSG9_ARATH2.110e-1779.25Shaggy-related protein kinase iota OS=Arabidopsis ... [more]
KSG10_ARATH2.183e-1466.67Shaggy-related protein kinase kappa OS=Arabidopsis... [more]
KSG4_ARATH3.724e-1466.67Shaggy-related protein kinase delta OS=Arabidopsis... [more]
KSG5_ARATH7.765e-1271.74Shaggy-related protein kinase epsilon OS=Arabidops... [more]
back to top
Properties
Property NameValue
Genbank descriptionC08005F08SK PhyRootSw1 Citrus sinensis cDNA clone C08005F08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX301092 ID=CX301092; Name=CX301092; organism=Citrus sinensis; type=EST; length=617bp
TTGATGAGCTTCGTGAACCTAATGCCCGCCTTCCAAATGGTCGCCCCTTT
CCTCCGCTTTTTAACTTTAAACAGGAATTAGCTGGAGCTTCACCTGAACT
GATCAACAGGCTGATACCAGAGCATGTGAGGCGGCAAACAGGTCTTAGCA
TGCCACATTCAGCTGGCACGTAAATATGGTGACATGAAACAAGTATCAAG
AATGCCATTGGTGGAGGGAAGTGAATGAAAGAACCTTCCTGGTCAACATA
TATTCAACATTTTGGCCTAGTTGGTGGATCTTCGCACCGTGCAAAGATGT
ATGCATATACTGGCTTTTGTGCAAAGATGTATGCATATACTGGCTTTTTG
GCTTAACCTTGAAGTTGATGATTCTGTCTACTATGTCGATCATGCTATTT
CCCTACTTTTTTGTACATTGTTTTGAGTGCAAGGATTCTGAAAAGCTAGG
AGTATAAGAAAAGGTGACTGTATTTATGTCTAGCTAGGTAGGAGTTGCAA
ATCCCAGCAAGAGCTCAAGGGCTCAGTACTGTAGTAGTTTGGCTTGCTTT
CTTGCTTGAACTTGGTGTTATTTTCACATTATGTCCATGCTGATCTTCAA
ATGGAAACTAGATTTCG
back to top