CX301090

Overview
NameCX301090
Unique NameCX301090
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length637
Libraries
Library NameType
PhyRootSw1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig11528 contig Csv1_Contig11528:1..628. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX301090 vs. ExPASy Swiss-Prot
Match: RSI1_SOLLC (Protein RSI-1 OS=Solanum lycopersicum GN=RSI-1 PE=2 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 9.840e-21
Identity = 44/74 (59.46%), Postives = 49/74 (66.22%), Query Frame = 1
Query:  160 NVAEAYGRGKLRSSECNPKCSYRCSATSHKKPXXXXXXXXXXXXXXVPPGTYGNKQVCPCYNNWKTKEGGPKCP 381
            NV E Y   KLR ++C P+C+YRCSATSHKKP              VP G YGNKQ CPCYNNWKT+EG PKCP
Sbjct:   25 NVVEGYN--KLRPTDCKPRCTYRCSATSHKKPCMFFCQKCCATCLCVPKGVYGNKQSCPCYNNWKTQEGKPKCP 96          
BLAST of CX301090 vs. ExPASy Swiss-Prot
Match: GAST1_SOLLC (Protein GAST1 OS=Solanum lycopersicum GN=GAST1 PE=2 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 6.378e-20
Identity = 42/73 (57.53%), Postives = 47/73 (64.38%), Query Frame = 1
Query:  169 EAYG--RGKLRSSECNPKCSYRCSATSHKKPXXXXXXXXXXXXXXVPPGTYGNKQVCPCYNNWKTKEGGPKCP 381
            + YG   G+L   +C PKC+YRCS TS+KKP              VP GTYGNKQ CPCYNNWKTK GGPKCP
Sbjct:   40 QLYGVSEGRLHPQDCQPKCTYRCSKTSYKKPCMFFCQKCCAKCLCVPAGTYGNKQSCPCYNNWKTKRGGPKCP 112          
BLAST of CX301090 vs. ExPASy Swiss-Prot
Match: GASA4_ARATH (Gibberellin-regulated protein 4 OS=Arabidopsis thaliana GN=GASA4 PE=1 SV=2)

HSP 1 Score: 83.9593 bits (206), Expect = 7.297e-16
Identity = 35/69 (50.72%), Postives = 41/69 (59.42%), Query Frame = 1
Query:  175 YGRGKLRSSECNPKCSYRCSATSHKKPXXXXXXXXXXXXXXVPPGTYGNKQVCPCYNNWKTKEGGPKCP 381
            YG G L+ ++C  +C  RC  T + K               VPPG YGNKQVC CYNNWKT+EGGPKCP
Sbjct:   38 YGPGSLKRTQCPSECDRRCKKTQYHKACITFCNKCCRKCLCVPPGYYGNKQVCSCYNNWKTQEGGPKCP 106          
The following BLAST results are available for this feature:
BLAST of CX301090 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 3
Match NameE-valueIdentityDescription
RSI1_SOLLC9.840e-2159.46Protein RSI-1 OS=Solanum lycopersicum GN=RSI-1 PE=... [more]
GAST1_SOLLC6.378e-2057.53Protein GAST1 OS=Solanum lycopersicum GN=GAST1 PE=... [more]
GASA4_ARATH7.297e-1650.72Gibberellin-regulated protein 4 OS=Arabidopsis tha... [more]
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Properties
Property NameValue
Genbank descriptionC08005F06SK PhyRootSw1 Citrus sinensis cDNA clone C08005F06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX301090 ID=CX301090; Name=CX301090; organism=Citrus sinensis; type=EST; length=637bp
CTCGTGCCGAATTCGGCACGAGGCTCTTTTTCTTTTGAAAGAATCATCTC
ACAGAGTGAGCGAAGTGAGGTAGCTCTAGTGTAGAAGACAATACACATGG
CCACCTCTCGCAGCTCCATTCTGTTCTTGGTGTCAATTCTTCTTTTGATC
ACACTCTCCAATGTGGCTGAGGCTTATGGTCGTGGCAAGCTCCGGTCATC
AGAATGCAATCCAAAGTGTTCTTATCGGTGTTCGGCGACGTCGCACAAGA
AGCCATGCATGTTCTTTTGCTTAAAGTGCTGCTCAAAATGCCTGTGCGTG
CCTCCTGGAACTTACGGAAACAAGCAAGTTTGCCCTTGTTACAATAACTG
GAAGACCAAGGAGGGAGGACCCAAATGCCCTTGATTGAGAATTTTTTTTT
TTTTTTATCGAATCAATTTTATGTCACTAATAAACAGGGCAATTCAAAAT
CAAGAGACTTAAGAATGTTTATTTTCTCTTTAGAAAAATCTGCGGCTTGG
GTCCCTCGTGCTTAAGATTTTATTCTACTTTGATTTGATGTCAATTAGCT
GCCTTCTTAAGAAGGGTTACTTTGATCACATGATGTAATCTTTTTATCTG
AATTTCTTCTTAAAAAGATCATATGCTTGATTATGGT
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