CX301064

Overview
NameCX301064
Unique NameCX301064
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length674
Libraries
Library NameType
PhyRootSw1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig7517 contig Csv1_Contig7517:327..1000. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX301064 vs. ExPASy Swiss-Prot
Match: SVOP_XENLA (Synaptic vesicle 2-related protein OS=Xenopus laevis GN=svop PE=2 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 3.499e-19
Identity = 55/169 (32.54%), Postives = 81/169 (47.93%), Query Frame = 2
Query:    2 TILLWVLYFGNSFVYYGIVLLAXXXXXXXXXXXXXXXXXENVQDASV---------YINVFITSFAELPGLLTAALLVDRVGRKLSMTIMFIFVCIFLLPLVTLQSNILLTALLSGARMFSMGTFIIANIFAPEIYPTSMRSTGAGVAYAVGRIGGMVCPLVAVGLVTS 481
            T+LLW ++F N+F YYG+VLL                        S+         Y ++  T+ +E PGLL    ++DRVGRK +M I FI      L L       +LT  L  AR F  G F  A ++ PE+YPT+ R+ G G    + R+G ++ P +A  ++ S
Sbjct:  317 TLLLWFIWFSNAFSYYGLVLLTTELFQAGDVCSISNQRKAVKPKCSLACEYLTVEDYTDLLWTTLSEFPGLLVTLWIIDRVGRKKTMAICFIIFSFSALLLFLCVGRNVLTVFLFIARAFISGGFQAAYVYTPEVYPTATRALGLGTCSGMARVGALITPFIAQVMLES 485          
BLAST of CX301064 vs. ExPASy Swiss-Prot
Match: SVOP_MOUSE (Synaptic vesicle 2-related protein OS=Mus musculus GN=Svop PE=1 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 7.795e-19
Identity = 62/203 (30.54%), Postives = 94/203 (46.31%), Query Frame = 2
Query:    2 TILLWVLYFGNSFVYYGIVLLAXXXXXXXXXXXXXXXXXENVQDASV---------YINVFITSFAELPGLLTAALLVDRVGRKLSMTIMFIFVCIFLLPLVTLQSNILLTALLSGARMFSMGTFIIANIFAPEIYPTSMRSTGAGVAYAVGRIGGMVCPLVA-VGLVTSCHQTXXXXXXXXXXXXXXXXXXXXPFETKGKEL 580
            T+LLW ++F N+F YYG+VLL                        S+         Y+++  T+ +E PG+L    ++DR+GRK +M + FI   +  L L       +LT LL  AR F  G F  A ++ PE+YPT+ R+ G G    + R+G ++ P +A V L +S + T                    P ETKG+ L
Sbjct:  317 TLLLWFIWFSNAFSYYGLVLLTTELFQAGDVCSISSRKKAVEAKCSLACEYLSKEDYMDLLWTTLSEFPGVLVTLWVIDRLGRKKTMALCFIIFSLCSLLLFICIGRNVLTLLLFIARAFISGGFQAAYVYTPEVYPTATRALGLGTCSGMARVGALITPFIAQVMLESSVYLT--LAVYSGCCLLAGVASCFLPIETKGRAL 517          
BLAST of CX301064 vs. ExPASy Swiss-Prot
Match: SVOP_RAT (Synaptic vesicle 2-related protein OS=Rattus norvegicus GN=Svop PE=1 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 1.018e-18
Identity = 61/203 (30.05%), Postives = 94/203 (46.31%), Query Frame = 2
Query:    2 TILLWVLYFGNSFVYYGIVLLAXXXXXXXXXXXXXXXXXENVQDASV---------YINVFITSFAELPGLLTAALLVDRVGRKLSMTIMFIFVCIFLLPLVTLQSNILLTALLSGARMFSMGTFIIANIFAPEIYPTSMRSTGAGVAYAVGRIGGMVCPLVA-VGLVTSCHQTXXXXXXXXXXXXXXXXXXXXPFETKGKEL 580
            T+LLW ++F N+F YYG+VLL                        S+         Y+++  T+ +E PG+L    ++DR+GRK +M + F+   +  L L       +LT LL  AR F  G F  A ++ PE+YPT+ R+ G G    + R+G ++ P +A V L +S + T                    P ETKG+ L
Sbjct:  317 TLLLWFIWFSNAFSYYGLVLLTTELFQAGDVCSISSRKKAVEAKCSLACEYLSKEDYMDLLWTTLSEFPGVLVTLWVIDRLGRKKTMALCFVIFSLCSLLLFICIGRNVLTLLLFIARAFISGGFQAAYVYTPEVYPTATRALGLGTCSGMARVGALITPFIAQVMLESSVYLT--LAVYSGCCLLAALASCFLPIETKGRAL 517          
BLAST of CX301064 vs. ExPASy Swiss-Prot
Match: SVOP_PONAB (Synaptic vesicle 2-related protein OS=Pongo abelii GN=SVOP PE=2 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 1.330e-18
Identity = 52/169 (30.77%), Postives = 83/169 (49.11%), Query Frame = 2
Query:    2 TILLWVLYFGNSFVYYGIVLLAXXXXXXXXXXXXXXXXXENVQDASV---------YINVFITSFAELPGLLTAALLVDRVGRKLSMTIMFIFVCIFLLPLVTLQSNILLTALLSGARMFSMGTFIIANIFAPEIYPTSMRSTGAGVAYAVGRIGGMVCPLVAVGLVTS 481
            T+LLW ++F N+F YYG+VLL                        S+         Y+++  T+ +E PG+L    ++DR+GRK +M + F+      L L       +LT LL  AR F  G F  A ++ PE+YPT+ R+ G G    + R+G ++ P +A  ++ S
Sbjct:  317 TLLLWFIWFSNAFSYYGLVLLTTELFQAGDVCGISSRKKAVEAKCSLACEYLSEEDYMDLLWTTLSEFPGVLVTLWIIDRLGRKKTMALCFVIFSFCSLLLFICVGRNVLTLLLFIARAFISGGFQAAYVYTPEVYPTATRALGLGTCSGMARVGALITPFIAQVMLES 485          
BLAST of CX301064 vs. ExPASy Swiss-Prot
Match: SVOP_HUMAN (Synaptic vesicle 2-related protein OS=Homo sapiens GN=SVOP PE=2 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 1.330e-18
Identity = 52/169 (30.77%), Postives = 83/169 (49.11%), Query Frame = 2
Query:    2 TILLWVLYFGNSFVYYGIVLLAXXXXXXXXXXXXXXXXXENVQDASV---------YINVFITSFAELPGLLTAALLVDRVGRKLSMTIMFIFVCIFLLPLVTLQSNILLTALLSGARMFSMGTFIIANIFAPEIYPTSMRSTGAGVAYAVGRIGGMVCPLVAVGLVTS 481
            T+LLW ++F N+F YYG+VLL                        S+         Y+++  T+ +E PG+L    ++DR+GRK +M + F+      L L       +LT LL  AR F  G F  A ++ PE+YPT+ R+ G G    + R+G ++ P +A  ++ S
Sbjct:  317 TLLLWFIWFSNAFSYYGLVLLTTELFQAGDVCGISSRKKAVEAKCSLACEYLSEEDYMDLLWTTLSEFPGVLVTLWIIDRLGRKKTMALCFVIFSFCSLLLFICVGRNVLTLLLFIARAFISGGFQAAYVYTPEVYPTATRALGLGTCSGMARVGALITPFIAQVMLES 485          
BLAST of CX301064 vs. ExPASy Swiss-Prot
Match: SVOP_BOVIN (Synaptic vesicle 2-related protein OS=Bos taurus GN=SVOP PE=2 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 1.330e-18
Identity = 52/169 (30.77%), Postives = 83/169 (49.11%), Query Frame = 2
Query:    2 TILLWVLYFGNSFVYYGIVLLAXXXXXXXXXXXXXXXXXENVQDASV---------YINVFITSFAELPGLLTAALLVDRVGRKLSMTIMFIFVCIFLLPLVTLQSNILLTALLSGARMFSMGTFIIANIFAPEIYPTSMRSTGAGVAYAVGRIGGMVCPLVAVGLVTS 481
            T+LLW ++F N+F YYG+VLL                        S+         Y+++  T+ +E PG+L    ++DR+GRK +M + F+      L L       +LT LL  AR F  G F  A ++ PE+YPT+ R+ G G    + R+G ++ P +A  ++ S
Sbjct:  317 TLLLWFIWFSNAFSYYGLVLLTTELFQAGDVCSISSRKKAVEAKCSLACEYLSEEDYMDLLWTTLSEFPGVLVTLWIIDRLGRKKTMALCFVVFSFCSLLLFICVGRNMLTLLLFIARAFISGGFQAAYVYTPEVYPTATRALGLGTCSGMARVGALITPFIAQVMLES 485          
BLAST of CX301064 vs. ExPASy Swiss-Prot
Match: YOU1_CAEEL (Putative transporter ZK637.1 OS=Caenorhabditis elegans GN=ZK637.1 PE=3 SV=5)

HSP 1 Score: 88.5817 bits (218), Expect = 3.275e-17
Identity = 50/160 (31.25%), Postives = 76/160 (47.50%), Query Frame = 2
Query:    2 TILLWVLYFGNSFVYYGIVLLAXXXXXXXXXXXXXXXXXENVQDA------SVYINVFITSFAELPGLLTAALLVDRVGRKLSMTIMFIFVCIFLLPLVTLQSNILLTALLSGARMFSMGTFIIANIFAPEIYPTSMRSTGAGVAYAVGRIGGMVCPLVA 463
            TILLW ++   +F YYG+VL                       +       S Y ++  T+ AE PGL+   L+++  GRK +M + +    IF   L        +T L+  AR F  G F  A ++ PE+YPT++R+ G G   A+ RIG +V P +A
Sbjct:  319 TILLWCIWAITAFSYYGMVLFTTVLFQSHDECHGGLFSNGTQMEVCQPLTRSDYFDLLSTTLAEFPGLIITVLIIEWFGRKKTMALEYAVFAIFTFLLYFCLDRFTVTVLIFVARAFISGAFQCAYVYTPEVYPTTLRAVGLGTCSAMARIGAIVTPFIA 478          
BLAST of CX301064 vs. ExPASy Swiss-Prot
Match: S22A7_BOVIN (Solute carrier family 22 member 7 OS=Bos taurus GN=SLC22A7 PE=2 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.205e-11
Identity = 48/152 (31.58%), Postives = 72/152 (47.37%), Query Frame = 2
Query:   17 VLYFGNSFVYYGIVLLAXXXXXXXXXXXXXXXXXENVQDASVYINVFITSFAELPGLLTAALLVDRVGRKLSM--TIMFIFVCIFLLPLVTLQSNILLTALLSGARMFSMGTFIIANIFAPEIYPTSMRSTGAGVAYAVGRIGGMVCPLVAV 466
            V++FG +F YYG+ L                    +    +VY+   +    ELP  L   L V   GR+L+M  T++   + + L  LV+ +     TAL    + FS   F  A +F  E+YPT +R TG G+   VGR+GG + PL A+
Sbjct:  351 VVWFGVNFSYYGVSL------------------DLSGLGLNVYLTQLVFGAVELPSKLLVYLSVRHAGRRLTMAGTLLGAALAVGLRILVSPEMKSWSTALAVMGKAFSEAAFTTAYLFTSELYPTVLRQTGMGLTALVGRLGGSLAPLAAL 484          
BLAST of CX301064 vs. ExPASy Swiss-Prot
Match: YCEI_BACSU (Putative metabolite transport protein yceI OS=Bacillus subtilis GN=yceI PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 7.813e-11
Identity = 51/165 (30.91%), Postives = 83/165 (50.30%), Query Frame = 2
Query:    2 TILLWVLYFGNSFVYYGIVLLAXXXXXXXXXXXXXXXXXENVQDASVYINVFITSFAELPGLLTAALLVDRVGRKLSMTIMFIFVCIFLLPLVTLQS-NILLTA--LLSGARMFSMGTFIIANIFAPEIYPTSMRSTGAGVAYAVGRIGGMVCPLVAVGLVTSCH 487
            T++L +++F   F YYG+ L                   +       +  V + + A+LPG  +AA L+++ GRK  + +  I          T  S ++LLTA  LLS    F++G + +   + PE YPT++R+TG+G   A GRIGG+  PL+ VG + + H
Sbjct:  217 TVMLSIVWFCVVFSYYGMFL-----------WLPSVMLLKGFSMIQSFEYVLLMTLAQLPGYFSAAWLIEKAGRKWILVVYLIGTAGSAYFFGTADSLSLLLTAGVLLS---FFNLGAWGVLYAYTPEQYPTAIRATGSGTTAAFGRIGGIFGPLL-VGTLAARH 366          
The following BLAST results are available for this feature:
BLAST of CX301064 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 9
Match NameE-valueIdentityDescription
SVOP_XENLA3.499e-1932.54Synaptic vesicle 2-related protein OS=Xenopus laev... [more]
SVOP_MOUSE7.795e-1930.54Synaptic vesicle 2-related protein OS=Mus musculus... [more]
SVOP_RAT1.018e-1830.05Synaptic vesicle 2-related protein OS=Rattus norve... [more]
SVOP_PONAB1.330e-1830.77Synaptic vesicle 2-related protein OS=Pongo abelii... [more]
SVOP_HUMAN1.330e-1830.77Synaptic vesicle 2-related protein OS=Homo sapiens... [more]
SVOP_BOVIN1.330e-1830.77Synaptic vesicle 2-related protein OS=Bos taurus G... [more]
YOU1_CAEEL3.275e-1731.25Putative transporter ZK637.1 OS=Caenorhabditis ele... [more]
S22A7_BOVIN1.205e-1131.58Solute carrier family 22 member 7 OS=Bos taurus GN... [more]
YCEI_BACSU7.813e-1130.91Putative metabolite transport protein yceI OS=Baci... [more]
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Properties
Property NameValue
Genbank descriptionC08005D01SK PhyRootSw1 Citrus sinensis cDNA clone C08005D01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX301064 ID=CX301064; Name=CX301064; organism=Citrus sinensis; type=EST; length=674bp
AACCATTCTATTGTGGGTATTATACTTTGGCAATTCATTCGTCTATTATG
GTATTGTATTGCTGGCATCTGAACTGAGCGGCAGTCAAAGTAAATGTAGC
TCAAGCATCTTGCTTTCAGAAAATGTGCAGGATGCTAGTGTCTACATAAA
TGTATTCATCACTAGCTTTGCAGAGCTACCTGGACTTCTTACAGCTGCAT
TACTTGTGGACAGAGTGGGTCGCAAGCTTTCCATGACAATTATGTTTATC
TTTGTATGTATTTTCCTGCTTCCACTGGTTACACTTCAGTCCAACATTTT
GCTAACAGCATTATTATCCGGAGCTCGCATGTTCTCTATGGGAACCTTTA
TTATCGCCAACATTTTTGCCCCCGAGATATATCCAACTTCTATGAGATCA
ACTGGTGCTGGAGTTGCGTATGCTGTAGGAAGGATTGGTGGTATGGTATG
CCCTCTTGTAGCTGTTGGACTAGTGACTAGTTGCCATCAAACAGCTGCAA
TACTTCTATTAGAGGCTCTTATTGTACTTTCAGTAGTCGTTATTCTGCTT
ATCCCATTTGAAACCAAGGGAAAGGAATTGGTTAACACTATTGATGGTGT
ATCAAACTCTAAACAAGTTTTAGTTGTTGCATAACAAATGTGTACACTTT
CCCATAATAAAAGAACACATTTCA
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