CX301058

Overview
NameCX301058
Unique NameCX301058
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length722
Libraries
Library NameType
PhyRootSw1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX301058 vs. ExPASy Swiss-Prot
Match: AB7G_ARATH (ABC transporter G family member 7 OS=Arabidopsis thaliana GN=ABCG7 PE=1 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 4.093e-16
Identity = 55/192 (28.65%), Postives = 85/192 (44.27%), Query Frame = 1
Query:   34 FPSFVYGCIVYWIVGLNS--ATFGYFXXXXXXXXXXXXXXXXXVSALSPNVDVANAMGIPSVIVALIFAGFYINLDSLPVVAEWIPYISFMRWAFQSFCINEFKGQTFSCSAAASGSQCLPDGTAVLESLSFNDQTIHGSTXXXXXXXXXXXXSAIVVLEVNRLKFMKL------GHVGGNMKNFDDNEASE 585
            FP  ++G ++Y +  LN   + FG F                 V A+ P+ + A A+G   + V ++F G+Y+N D+ P++  WIP  S +RWAFQ  CINEF G  F        +  +  G   LE LSF  + I  +             +  ++LE N+ K+ KL      G  G +    D  E  +
Sbjct:  502 FP-LMFGAVLYPMARLNPTLSRFGKFCGIVTVESFAASAMGLTVGAMVPSTEAAMAVGPSLMTVFIVFGGYYVNADNTPIIFRWIPRASLIRWAFQGLCINEFSGLKFD----HQNTFDVQTGEQALERLSFGGRRIRETIAAQSRILMFWYSATYLLLEKNKPKYQKLELLVDNGETGNSGVQLDKAEVDQ 688          
BLAST of CX301058 vs. ExPASy Swiss-Prot
Match: ABCGG_DICDI (ABC transporter G family member 16 OS=Dictyostelium discoideum GN=abcG16 PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 5.178e-11
Identity = 43/155 (27.74%), Postives = 68/155 (43.87%), Query Frame = 1
Query:   28 NVFPSFVYGCIVYWIVGLNSAT--FGYFXXXXXXXXXXXXXXXXXVSALSPNVDVANAMGIPSVIVALIFAGFYINLDSLPVVAEWIPYISFMRWAFQSFCINEFKGQTFSCSA------------------AASGSQCLP--DGTAVLESLSFN 426
            N     ++  I YW++GLN +   F +F                 VS  SPN  +A+ +      + L+ AG+ I+ +S+P+   W+ YIS  +W F++   N+  GQTF+C +                    SGSQ  P  DG  +L+S   N
Sbjct:  601 NFIDVIIFCSISYWLIGLNHSADRFFFFLLAIYLLDCLVNRVSKMVSIYSPNAAIASTIAPLYFSLFLLMAGYLIHRNSIPIYWRWMHYISPFKWVFEAILSNQLHGQTFTCKSDELLPPIGYPLLNVSFPDGYSGSQVCPIIDGIEILKSKDIN 755          
The following BLAST results are available for this feature:
BLAST of CX301058 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
AB7G_ARATH4.093e-1628.65ABC transporter G family member 7 OS=Arabidopsis t... [more]
ABCGG_DICDI5.178e-1127.74ABC transporter G family member 16 OS=Dictyosteliu... [more]
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Properties
Property NameValue
Genbank descriptionC08005C06SK PhyRootSw1 Citrus sinensis cDNA clone C08005C06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX301058 ID=CX301058; Name=CX301058; organism=Citrus sinensis; type=EST; length=722bp
CTCGTGCCGAATTCGGCACGAGGGATTAATGTATTTCCTTCATTTGTCTA
CGGATGTATTGTGTATTGGATTGTTGGATTAAACTCCGCAACCTTTGGTT
ACTTTATTTTAATTCTCTTATTATTGGCAGCAACTGCAATTTCTTTAGGT
TTAGCAGTGTCGGCTTTGAGCCCGAATGTTGACGTGGCAAATGCGATGGG
TATTCCTAGTGTCATCGTGGCCCTAATTTTTGCTGGATTCTACATTAACC
TGGATTCCTTACCTGTTGTCGCCGAATGGATTCCTTACATTAGCTTCATG
CGATGGGCCTTTCAGTCATTTTGCATTAATGAGTTCAAGGGACAGACCTT
CTCCTGTTCTGCTGCTGCGAGTGGGTCGCAATGTTTGCCGGATGGCACTG
CAGTTTTAGAAAGCTTATCATTCAACGATCAAACCATCCATGGATCGACT
TTAGGTTTGGGTGTTATGTTGTTATTTTTCTTCTTTAGTGCGATCGTTGT
GCTCGAAGTGAATCGATTGAAATTTATGAAGCTCGGACATGTTGGTGGGA
ATATGAAGAATTTCGATGATAACGAAGCGAGCGAACCGTCGCANAAAACG
AAAATGGTATTAGAGATTAATTCAGAACGCGTATCTCCTTAAGACTTAGT
CATCATCATCCTCATCAATTCTTTTCTTTTTTGTACTTTCTTGACAACTT
TGACCTTCCATGACGTGCTCTT
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