CX301054

Overview
NameCX301054
Unique NameCX301054
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length671
Libraries
Library NameType
PhyRootSw1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX301054 vs. ExPASy Swiss-Prot
Match: TM9S2_RAT (Transmembrane 9 superfamily member 2 OS=Rattus norvegicus GN=Tm9sf2 PE=2 SV=1)

HSP 1 Score: 153.68 bits (387), Expect = 8.215e-37
Identity = 74/144 (51.39%), Postives = 90/144 (62.50%), Query Frame = 1
Query:    7 PIFSILIGGILPFGAIFIELFFILTSIWLHQXXXXXXXXXXXXXXXXXTCAEITIVLCYFQLCSEDYLWWWRSYLTSGSSXXXXXXXXXXXXXTKLEISKPVSGILYFGYMLIASYAFFVLTGTIGFYACFWFTRLIYSSVKID 438
            P+  I++GGILPFG IFI+LFFIL SIW HQ                 TC+E TI+LCYF LC+EDY W WRS+LTSG +             +KL+I+   S ILYFGY +I    FF+ TGTIGF+ACFWF   IYS VK+D
Sbjct:  520 PLPGIIMGGILPFGCIFIQLFFILNSIWSHQMYYMFGFLFLVFIILVITCSEATILLCYFHLCAEDYHWQWRSFLTSGFTAVYFLVYAIHYFFSKLQITGTASTILYFGYTMIMVLIFFLFTGTIGFFACFWFVTKIYSVVKVD 663          
BLAST of CX301054 vs. ExPASy Swiss-Prot
Match: TM9S2_PONAB (Transmembrane 9 superfamily member 2 OS=Pongo abelii GN=TM9SF2 PE=2 SV=1)

HSP 1 Score: 153.68 bits (387), Expect = 8.215e-37
Identity = 74/144 (51.39%), Postives = 90/144 (62.50%), Query Frame = 1
Query:    7 PIFSILIGGILPFGAIFIELFFILTSIWLHQXXXXXXXXXXXXXXXXXTCAEITIVLCYFQLCSEDYLWWWRSYLTSGSSXXXXXXXXXXXXXTKLEISKPVSGILYFGYMLIASYAFFVLTGTIGFYACFWFTRLIYSSVKID 438
            P+  I++GGILPFG IFI+LFFIL SIW HQ                 TC+E TI+LCYF LC+EDY W WRS+LTSG +             +KL+I+   S ILYFGY +I    FF+ TGTIGF+ACFWF   IYS VK+D
Sbjct:  520 PLPGIIMGGILPFGCIFIQLFFILNSIWSHQMYYMFGFLFLVFIILVITCSEATILLCYFHLCAEDYHWQWRSFLTSGFTAVYFLIYAVHYFFSKLQITGTASTILYFGYTMIMVLIFFLFTGTIGFFACFWFVTKIYSVVKVD 663          
BLAST of CX301054 vs. ExPASy Swiss-Prot
Match: TM9S2_MOUSE (Transmembrane 9 superfamily member 2 OS=Mus musculus GN=Tm9sf2 PE=2 SV=1)

HSP 1 Score: 153.68 bits (387), Expect = 8.215e-37
Identity = 74/144 (51.39%), Postives = 90/144 (62.50%), Query Frame = 1
Query:    7 PIFSILIGGILPFGAIFIELFFILTSIWLHQXXXXXXXXXXXXXXXXXTCAEITIVLCYFQLCSEDYLWWWRSYLTSGSSXXXXXXXXXXXXXTKLEISKPVSGILYFGYMLIASYAFFVLTGTIGFYACFWFTRLIYSSVKID 438
            P+  I++GGILPFG IFI+LFFIL SIW HQ                 TC+E TI+LCYF LC+EDY W WRS+LTSG +             +KL+I+   S ILYFGY +I    FF+ TGTIGF+ACFWF   IYS VK+D
Sbjct:  519 PLPGIIMGGILPFGCIFIQLFFILNSIWSHQMYYMFGFLFLVFIILVITCSEATILLCYFHLCAEDYHWQWRSFLTSGFTAVYFLIYAIHYFFSKLQITGTASTILYFGYTMIMVLIFFLFTGTIGFFACFWFVTKIYSVVKVD 662          
BLAST of CX301054 vs. ExPASy Swiss-Prot
Match: TM9S2_HUMAN (Transmembrane 9 superfamily member 2 OS=Homo sapiens GN=TM9SF2 PE=1 SV=1)

HSP 1 Score: 153.68 bits (387), Expect = 8.215e-37
Identity = 74/144 (51.39%), Postives = 90/144 (62.50%), Query Frame = 1
Query:    7 PIFSILIGGILPFGAIFIELFFILTSIWLHQXXXXXXXXXXXXXXXXXTCAEITIVLCYFQLCSEDYLWWWRSYLTSGSSXXXXXXXXXXXXXTKLEISKPVSGILYFGYMLIASYAFFVLTGTIGFYACFWFTRLIYSSVKID 438
            P+  I++GGILPFG IFI+LFFIL SIW HQ                 TC+E TI+LCYF LC+EDY W WRS+LTSG +             +KL+I+   S ILYFGY +I    FF+ TGTIGF+ACFWF   IYS VK+D
Sbjct:  520 PLPGIIMGGILPFGCIFIQLFFILNSIWSHQMYYMFGFLFLVFIILVITCSEATILLCYFHLCAEDYHWQWRSFLTSGFTAVYFLIYAVHYFFSKLQITGTASTILYFGYTMIMVLIFFLFTGTIGFFACFWFVTKIYSVVKVD 663          
BLAST of CX301054 vs. ExPASy Swiss-Prot
Match: PHG1A_DICDI (Putative phagocytic receptor 1a OS=Dictyostelium discoideum GN=phg1a PE=2 SV=1)

HSP 1 Score: 145.591 bits (366), Expect = 2.237e-34
Identity = 75/146 (51.37%), Postives = 93/146 (63.70%), Query Frame = 1
Query:    1 MNPIFSILIGGILPFGAIFIELFFILTSIWLHQXXXXXXXXXXXXXXXXXTCAEITIVLCYFQLCSEDYLWWWRSYLTSGSSXXXXXXXXXXXXXTKLEISKPVSGILYFGYMLIASYAFFVLTGTIGFYACFWFTRLIYSSVKID 438
            MNP  SIL+GGILPFGA+FIEL FILTS+W +Q                 T AEI+IV+CYFQLC+ED+ WWWRS+LT+GSS               L I+K +S +L F Y  I S AF  LTGTIGFY+C++  R IYSS+ I+
Sbjct:  497 MNPYLSILMGGILPFGAVFIELHFILTSLWDNQFYYIFGFLFIVLMILIVTSAEISIVMCYFQLCAEDHHWWWRSFLTAGSS-SLYMFIYSVSFFRYLGITKFISSLLDFSYSFIMSLAFAALTGTIGFYSCYFLVRKIYSSIHIN 641          
BLAST of CX301054 vs. ExPASy Swiss-Prot
Match: TM9S4_RAT (Transmembrane 9 superfamily member 4 OS=Rattus norvegicus GN=Tm9sf4 PE=2 SV=1)

HSP 1 Score: 140.969 bits (354), Expect = 5.510e-33
Identity = 67/146 (45.89%), Postives = 91/146 (62.33%), Query Frame = 1
Query:    1 MNPIFSILIGGILPFGAIFIELFFILTSIWLHQXXXXXXXXXXXXXXXXXTCAEITIVLCYFQLCSEDYLWWWRSYLTSGSSXXXXXXXXXXXXXTKLEISKPVSGILYFGYMLIASYAFFVLTGTIGFYACFWFTRLIYSSVKID 438
            MN    IL+ GILPFGA+FIELFFI ++IW +Q                 +C++I+IV+ YFQLC+EDY WWWR++L SG S              KL+I + +  +LYFGY  +   +F++LTGTIGFYA + F R IY++VKID
Sbjct:  498 MNRFVGILMAGILPFGAMFIELFFIFSAIWENQFYYLFGFLFLVFIILVVSCSQISIVMVYFQLCAEDYRWWWRNFLVSGGSAFYVLVYAIFYFVNKLDIVEFIPSLLYFGYTTLMVLSFWLLTGTIGFYAAYMFVRKIYAAVKID 643          
BLAST of CX301054 vs. ExPASy Swiss-Prot
Match: TM9S4_PONAB (Transmembrane 9 superfamily member 4 OS=Pongo abelii GN=TM9SF4 PE=2 SV=1)

HSP 1 Score: 140.969 bits (354), Expect = 5.510e-33
Identity = 67/146 (45.89%), Postives = 91/146 (62.33%), Query Frame = 1
Query:    1 MNPIFSILIGGILPFGAIFIELFFILTSIWLHQXXXXXXXXXXXXXXXXXTCAEITIVLCYFQLCSEDYLWWWRSYLTSGSSXXXXXXXXXXXXXTKLEISKPVSGILYFGYMLIASYAFFVLTGTIGFYACFWFTRLIYSSVKID 438
            MN    IL+ GILPFGA+FIELFFI ++IW +Q                 +C++I+IV+ YFQLC+EDY WWWR++L SG S              KL+I + +  +LYFGY  +   +F++LTGTIGFYA + F R IY++VKID
Sbjct:  497 MNRFVGILMAGILPFGAMFIELFFIFSAIWENQFYYLFGFLFLVFIILVVSCSQISIVMVYFQLCAEDYRWWWRNFLVSGGSAFYVLVYAIFYFVNKLDIVEFIPSLLYFGYTALMVLSFWLLTGTIGFYAAYMFVRKIYAAVKID 642          
BLAST of CX301054 vs. ExPASy Swiss-Prot
Match: TM9S4_MOUSE (Transmembrane 9 superfamily member 4 OS=Mus musculus GN=Tm9sf4 PE=2 SV=1)

HSP 1 Score: 140.969 bits (354), Expect = 5.510e-33
Identity = 67/146 (45.89%), Postives = 91/146 (62.33%), Query Frame = 1
Query:    1 MNPIFSILIGGILPFGAIFIELFFILTSIWLHQXXXXXXXXXXXXXXXXXTCAEITIVLCYFQLCSEDYLWWWRSYLTSGSSXXXXXXXXXXXXXTKLEISKPVSGILYFGYMLIASYAFFVLTGTIGFYACFWFTRLIYSSVKID 438
            MN    IL+ GILPFGA+FIELFFI ++IW +Q                 +C++I+IV+ YFQLC+EDY WWWR++L SG S              KL+I + +  +LYFGY  +   +F++LTGTIGFYA + F R IY++VKID
Sbjct:  498 MNRFVGILMAGILPFGAMFIELFFIFSAIWENQFYYLFGFLFLVFIILVVSCSQISIVMVYFQLCAEDYRWWWRNFLVSGGSAFYVLVYAIFYFVNKLDIVEFIPSLLYFGYTTLMVLSFWLLTGTIGFYAAYMFVRKIYAAVKID 643          
BLAST of CX301054 vs. ExPASy Swiss-Prot
Match: TM9S4_HUMAN (Transmembrane 9 superfamily member 4 OS=Homo sapiens GN=TM9SF4 PE=1 SV=2)

HSP 1 Score: 140.969 bits (354), Expect = 5.510e-33
Identity = 67/146 (45.89%), Postives = 91/146 (62.33%), Query Frame = 1
Query:    1 MNPIFSILIGGILPFGAIFIELFFILTSIWLHQXXXXXXXXXXXXXXXXXTCAEITIVLCYFQLCSEDYLWWWRSYLTSGSSXXXXXXXXXXXXXTKLEISKPVSGILYFGYMLIASYAFFVLTGTIGFYACFWFTRLIYSSVKID 438
            MN    IL+ GILPFGA+FIELFFI ++IW +Q                 +C++I+IV+ YFQLC+EDY WWWR++L SG S              KL+I + +  +LYFGY  +   +F++LTGTIGFYA + F R IY++VKID
Sbjct:  497 MNRFVGILMAGILPFGAMFIELFFIFSAIWENQFYYLFGFLFLVFIILVVSCSQISIVMVYFQLCAEDYRWWWRNFLVSGGSAFYVLVYAIFYFVNKLDIVEFIPSLLYFGYTALMVLSFWLLTGTIGFYAAYMFVRKIYAAVKID 642          
BLAST of CX301054 vs. ExPASy Swiss-Prot
Match: TM9S4_BOVIN (Transmembrane 9 superfamily member 4 OS=Bos taurus GN=TM9SF4 PE=2 SV=2)

HSP 1 Score: 140.969 bits (354), Expect = 5.510e-33
Identity = 67/146 (45.89%), Postives = 91/146 (62.33%), Query Frame = 1
Query:    1 MNPIFSILIGGILPFGAIFIELFFILTSIWLHQXXXXXXXXXXXXXXXXXTCAEITIVLCYFQLCSEDYLWWWRSYLTSGSSXXXXXXXXXXXXXTKLEISKPVSGILYFGYMLIASYAFFVLTGTIGFYACFWFTRLIYSSVKID 438
            MN    IL+ GILPFGA+FIELFFI ++IW +Q                 +C++I+IV+ YFQLC+EDY WWWR++L SG S              KL+I + +  +LYFGY  +   +F++LTGTIGFYA + F R IY++VKID
Sbjct:  497 MNRFVGILMAGILPFGAMFIELFFIFSAIWENQFYYLFGFLFLVFIILVVSCSQISIVMVYFQLCAEDYRWWWRNFLVSGGSAFYVLVYAIFYFVNKLDIVEFIPSLLYFGYTALMVLSFWLLTGTIGFYAAYMFVRKIYAAVKID 642          
The following BLAST results are available for this feature:
BLAST of CX301054 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 22
Match NameE-valueIdentityDescription
TM9S2_RAT8.215e-3751.39Transmembrane 9 superfamily member 2 OS=Rattus nor... [more]
TM9S2_PONAB8.215e-3751.39Transmembrane 9 superfamily member 2 OS=Pongo abel... [more]
TM9S2_MOUSE8.215e-3751.39Transmembrane 9 superfamily member 2 OS=Mus muscul... [more]
TM9S2_HUMAN8.215e-3751.39Transmembrane 9 superfamily member 2 OS=Homo sapie... [more]
PHG1A_DICDI2.237e-3451.37Putative phagocytic receptor 1a OS=Dictyostelium d... [more]
TM9S4_RAT5.510e-3345.89Transmembrane 9 superfamily member 4 OS=Rattus nor... [more]
TM9S4_PONAB5.510e-3345.89Transmembrane 9 superfamily member 4 OS=Pongo abel... [more]
TM9S4_MOUSE5.510e-3345.89Transmembrane 9 superfamily member 4 OS=Mus muscul... [more]
TM9S4_HUMAN5.510e-3345.89Transmembrane 9 superfamily member 4 OS=Homo sapie... [more]
TM9S4_BOVIN5.510e-3345.89Transmembrane 9 superfamily member 4 OS=Bos taurus... [more]

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Properties
Property NameValue
Genbank descriptionC08005C02SK PhyRootSw1 Citrus sinensis cDNA clone C08005C02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX301054 ID=CX301054; Name=CX301054; organism=Citrus sinensis; type=EST; length=671bp
ATGAATCCCATCTTCTCTATCCTAATTGGGGGCATACTTCCATTTGGAGC
CATCTTCATTGAGCTCTTTTTCATTCTCACCTCAATATGGTTGCATCAGT
TCTATTACCTATTTGGCTTCCTCCTGCTTGTCTTCCTGATTCTCATTGTC
ACATGTGCTGAGATCACAATTGTGCTCTGTTACTTCCAGTTATGCAGTGA
GGATTACCTTTGGTGGTGGAGATCTTACCTGACTTCAGGTTCCTCAGCAC
TCTATCTGTTCCTCTATGCTGCTTTTTATTTCTTCACAAAGCTTGAGATC
AGCAAGCCGGTGTCTGGAATCTTGTACTTCGGGTATATGCTGATCGCCTC
ATATGCTTTCTTTGTGCTTACTGGTACAATTGGTTTCTACGCCTGCTTTT
GGTTCACGAGGCTTATCTACTCGTCAGTAAAGATTGATTGATCGGTTACA
ATTCAGATGCAAAAATTATTTGTGGAATCTGATTTATCCATGAACTTCCG
CAGGTAACAGGGATTCAATTTTTAAGCTCAAATCACAGAGAAATTATTCC
CACTTTTCGTGGTATAGGTTAGCTGAAATCACAGAAATTATTCCCATTTT
TCTTGGTAATTCACACTTTTTTCCATTGGCAGTTCTAGGTCTTACCTCCT
TGTTAATTGTTGTTCTTTCTT
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