CX301053

Overview
NameCX301053
Unique NameCX301053
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length718
Libraries
Library NameType
PhyRootSw1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX301053 vs. ExPASy Swiss-Prot
Match: SCL30_ARATH (Scarecrow-like protein 30 OS=Arabidopsis thaliana GN=SCL30 PE=2 SV=1)

HSP 1 Score: 299.286 bits (765), Expect = 1.359e-80
Identity = 143/236 (60.59%), Postives = 179/236 (75.85%), Query Frame = 3
Query:    3 RTSAADILKAYQMSLSAWPFIRMSYHFANQTIRKLAEKATRLHIIDFGICYGFQWPCLIQILSSRPTGPPMLRITGIELPQPGFRPAERVEETGNRLKSYCERFNVPFEYNVIAQKWETIRLEDFKIDRDEVTVVNCVHRMKNLPDDTVVDSSPRDAVLDLIKRINPDVFIHGISNGTYNAPFFLARFREALFHFSAMFDIFDATVPREDAERMLFEREIVGKDALNAIACEGIER 710
            RTS  DILKAY+  + A P + M Y  AN+TI +LA KAT LHIIDFGI YGFQWPCLIQ LS R  GPP+LR+TGIELPQ GFRP+ERVEETG RLK +C++FNVPFEY+ IA+ WE I L+D  I+  E TVVNC+ R++  PD+TV  +SPRD  L L + INPD+F+    NGTYN+PFFL RFREALFH S++FD+++ T+  +D  R L ERE++ +DA++ IACEG ER
Sbjct:  275 RTSMVDILKAYKGFVQACPTLIMCYFTANRTINELASKATTLHIIDFGILYGFQWPCLIQALSKRDIGPPLLRVTGIELPQSGFRPSERVEETGRRLKRFCDKFNVPFEYSFIAKNWENITLDDLVINSGETTVVNCILRLQYTPDETVSLNSPRDTALKLFRDINPDLFVFAEINGTYNSPFFLTRFREALFHCSSLFDMYETTLSEDDNCRTLVERELIIRDAMSVIACEGSER 510          
BLAST of CX301053 vs. ExPASy Swiss-Prot
Match: SCL11_ARATH (Scarecrow-like protein 11 OS=Arabidopsis thaliana GN=SCL11 PE=2 SV=1)

HSP 1 Score: 299.286 bits (765), Expect = 1.359e-80
Identity = 139/237 (58.65%), Postives = 181/237 (76.37%), Query Frame = 3
Query:    6 TSAADILKAYQMSLSAWPFIRMSYHFANQTIRKLAEKATRLHIIDFGICYGFQWPCLIQILSSRPTGPPMLRITGIELPQPGFRPAERVEETGNRLKSYCERFNVPFEYNVIAQKWETIRLEDFKIDRDEVTVVNCVHRMKNLPDDTVVDSSPRDAVLDLIKRINPDVFIHGISNGTYNAPFFLARFREALFHFSAMFDIFDATVPRED--AERMLFEREIVGKDALNAIACEGIER 710
            TS  DILKAY++ +   P     Y  AN++I +LA KAT+LHI+DFG+ YGFQWPCL++ LS RP GPPMLR+TGIELPQ GFRP++RVEETG RLK +C++FNVPFE+N IA+KWETI L++  I+  E TVVNC+HR++  PD+TV   SPRD VL L + INPD+F+    NG YN+PFF+ RFREALFH+S++FD+FD T+  ED    R L ERE++ +DA++ I+CEG ER
Sbjct:  293 TSMVDILKAYKLFVHTCPIYVTDYFAANKSIYELAMKATKLHIVDFGVLYGFQWPCLLRALSKRPGGPPMLRVTGIELPQAGFRPSDRVEETGRRLKRFCDQFNVPFEFNFIAKKWETITLDELMINPGETTVVNCIHRLQYTPDETVSLDSPRDTVLKLFRDINPDLFVFAEINGMYNSPFFMTRFREALFHYSSLFDMFDTTIHAEDEYKNRSLLERELLVRDAMSVISCEGAER 529          
BLAST of CX301053 vs. ExPASy Swiss-Prot
Match: SCL9_ARATH (Scarecrow-like protein 9 OS=Arabidopsis thaliana GN=SCL9 PE=2 SV=1)

HSP 1 Score: 298.13 bits (762), Expect = 3.027e-80
Identity = 144/236 (61.02%), Postives = 179/236 (75.85%), Query Frame = 3
Query:    9 SAADILKAYQMSLSAWPFIRMSYHFANQTIRKLAEKATRLHIIDFGICYGFQWPCLIQILSSRPTGPPMLRITGIELPQPGFRPAERVEETGNRLKSYCERFNVPFEYNVIAQKWETIRLEDFKIDRDEVTVVNCVHRMKNLPDDTVVDSSPRDAVLDLIKRINPDVFIHGISNGTYNAPFFLARFREALFHFSAMFDIFDATVPREDAERMLFEREIVGKDALNAIACEGIERVE 716
            SAA +LKA+Q+ L+  PF ++SY   N+TIR L   + R+H+IDFGI YGFQWP LI   S    G P +RITGIE PQPGFRPA+RVEETG RL +Y + F VPFEY  IA+KW+ I+LED  IDRDE+TVVNC++R +NL D++V   S RD VL+LI +INPD+F+ GI NG YNAPFF+ RFREALFHFS++FD+ +  VPRED ERM  E E+ G++ALN IACEG ERVE
Sbjct:  413 SAAAVLKAHQLFLACCPFRKLSYFITNKTIRDLVGNSQRVHVIDFGILYGFQWPTLIHRFSMY--GSPKVRITGIEFPQPGFRPAQRVEETGQRLAAYAKLFGVPFEYKAIAKKWDAIQLEDLDIDRDEITVVNCLYRAENLHDESVKVESCRDTVLNLIGKINPDLFVFGIVNGAYNAPFFVTRFREALFHFSSIFDMLETIVPREDEERMFLEMEVFGREALNVIACEGWERVE 646          
BLAST of CX301053 vs. ExPASy Swiss-Prot
Match: SCL14_ARATH (Scarecrow-like protein 14 OS=Arabidopsis thaliana GN=SCL14 PE=2 SV=2)

HSP 1 Score: 296.204 bits (757), Expect = 1.150e-79
Identity = 144/239 (60.25%), Postives = 183/239 (76.57%), Query Frame = 3
Query:    3 RTSAADILKAYQMSLSAWPFIRMSYHFANQTIRKLAEKATRLHIIDFGICYGFQWPCLIQILS-SRPTGPPMLRITGIELPQPGFRPAERVEETGNRLKSYCERFNVPFEYNVIAQKWETIRLEDFKIDRDEVTVVNCVHRMKNLPDDTVVDSSPRDAVLDLIKRINPDVFIHGISNGTYNAPFFLARFREALFHFSAMFDIFDATVPREDAERMLFEREIVGKDALNAIACEGIERVE 716
            +TSAAD+LKAYQ  +S  PF + +  FAN ++ +    A  +HIIDFGI YGFQWP LI  LS SRP G P LRITGIELPQ GFRPAE V+ETG+RL  YC+R NVPFEYN IAQKWETI++ED K+ + E  VVN + R +NL D+TV+ +SPRDAVL LI++INP+VFI  I +G YNAPFF+ RFREALFH+SA+FD+ D+ + RED  R+++E+E  G++ +N +ACEG ERVE
Sbjct:  460 KTSAADMLKAYQTYMSVCPFKKAAIIFANHSMMRFTANANTIHIIDFGISYGFQWPALIHRLSLSRPGGSPKLRITGIELPQRGFRPAEGVQETGHRLARYCQRHNVPFEYNAIAQKWETIQVEDLKLRQGEYVVVNSLFRFRNLLDETVLVNSPRDAVLKLIRKINPNVFIPAILSGNYNAPFFVTRFREALFHYSAVFDMCDSKLAREDEMRLMYEKEFYGREIVNVVACEGTERVE 698          
BLAST of CX301053 vs. ExPASy Swiss-Prot
Match: SCL34_ARATH (Scarecrow-like protein 34 OS=Arabidopsis thaliana GN=SCL34 PE=3 SV=1)

HSP 1 Score: 285.034 bits (728), Expect = 2.652e-76
Identity = 139/240 (57.92%), Postives = 182/240 (75.83%), Query Frame = 3
Query:    3 RTSAADILKAYQMSLSAWPFIRMSYHFANQTIRKLAEKATRLHIIDFGICYGFQWPCLIQILSSRPTGPPMLRITGIELPQPGFRPAERVEETGNRLKSYCERFNVPFEYNVIA-QKWETIRLEDFKIDRDEVTVVNCVHRMKNLPDDT-VVDSSPRDAVLDLIKRINPDVFIHGISNGTYNAPFFLARFREALFHFSAMFDIFDATVPREDAERMLFEREIVGKDALNAIACEGIERVE 716
            + +AAD ++AY++ LS+ PF+ + Y F+   I  +A+ A  LHI+DFGI YGFQWP  IQ +S R   P  LRITGIELPQ GFRPAER+EETG RL  YC+RFNVPFEY  IA Q WETIR+ED  I  +EV  VN   R+KNL D+T   ++ PRDAVL LI+ +NPDVFIH I NG++NAPFF++RF+EA++H+SA+FD+FD+T+PR++ ER+ FERE  G++A+N IACE  +RVE
Sbjct:  321 KDTAADTIRAYRVYLSSSPFVTLMYFFSIWMILDVAKDAPVLHIVDFGILYGFQWPMFIQSISDRKDVPRKLRITGIELPQCGFRPAERIEETGRRLAEYCKRFNVPFEYKAIASQNWETIRIEDLDIRPNEVLAVNAGLRLKNLQDETGSEENCPRDAVLKLIRNMNPDVFIHAIVNGSFNAPFFISRFKEAVYHYSALFDMFDSTLPRDNKERIRFEREFYGREAMNVIACEEADRVE 560          
BLAST of CX301053 vs. ExPASy Swiss-Prot
Match: SCL33_ARATH (Scarecrow-like protein 33 OS=Arabidopsis thaliana GN=SCL33 PE=3 SV=1)

HSP 1 Score: 276.944 bits (707), Expect = 7.222e-74
Identity = 136/240 (56.67%), Postives = 173/240 (72.08%), Query Frame = 3
Query:    3 RTSAADILKAYQMSLSAWPFIRMSYHFANQTIRKLAEKATR--LHIIDFGICYGFQWPCLIQILSSRPTGPPMLRITGIELPQPGFRPAERVEETGNRLKSYCERFNVPFEYNVIAQKWETIRLEDFKIDRDEVTVVNCVHRMKNLPDDTVVDSSPRDAVLDLIKRINPDVFIHGISNGTYNAPFFLARFREALFHFSAMFDIFDATVPREDAERMLFEREIVGKDALNAIACEGIERVE 716
            +TS +D+LKAYQ  +S  PF +++  FAN +I +LA  A    +HIIDFGI  GFQWP LI  L+ R      LRITGIELPQ GFRPAE V ETG RL  YC++FN+PFEYN IAQKWE+I+LED K+   E   VN + R +NL D+TV   SPRD VL LI++I PDVFI GI +G+YNAPFF+ RFRE LFH+S++FD+ D  + RED  R++FE+E  G++ +N +ACEG ERVE
Sbjct:  385 KTSTSDMLKAYQTYISVCPFKKIAIIFANHSIMRLASSANAKTIHIIDFGISDGFQWPSLIHRLAWRRGSSCKLRITGIELPQRGFRPAEGVIETGRRLAKYCQKFNIPFEYNAIAQKWESIKLEDLKLKEGEFVAVNSLFRFRNLLDETVAVHSPRDTVLKLIRKIKPDVFIPGILSGSYNAPFFVTRFREVLFHYSSLFDMCDTNLTREDPMRVMFEKEFYGREIMNVVACEGTERVE 624          
BLAST of CX301053 vs. ExPASy Swiss-Prot
Match: SCL31_ARATH (Scarecrow-like protein 31 OS=Arabidopsis thaliana GN=SCL31 PE=2 SV=2)

HSP 1 Score: 263.462 bits (672), Expect = 8.264e-70
Identity = 131/240 (54.58%), Postives = 171/240 (71.25%), Query Frame = 3
Query:    3 RTSAADILKAYQMSLSAWPFIRMSYHFANQTIRKLAEKATRLHIIDFGICYGFQWPCLIQILSSRPTGPPMLRITGIELPQPGFRPAERVEETGNRLKSYCERFNVPFEYNVIAQK-WETIRLEDFKIDRDEVTVVNCVHRMKNLPDDTV-VDSSPRDAVLDLIKRINPDVFIHGISNGTYNAPFFLARFREALFHFSAMFDIFDATVPREDAERMLFEREIVGKDALNAIACEGIERVE 716
            + +AA ILK+Y + LSA PF+ + Y F+N+ I   A+ A+ LHI+DFGI YGFQWP  IQ LS    G   LRITGIE+PQ G RP ER+++TG RL  YC+RF VPFEYN IA K WETI++E+FKI  +EV  VN V R KNL D     +  PRD  L LI+ +NP+VF+    NG++NAPFF  RF+EALFH+SA+FD+F AT+ +E+ ER+ FE E  G++ +N IACEG++RVE
Sbjct:  353 KRTAAQILKSYSVFLSASPFMTLIYFFSNKMILDAAKDASVLHIVDFGILYGFQWPMFIQHLSKSNPGLRKLRITGIEIPQHGLRPTERIQDTGRRLTEYCKRFGVPFEYNAIASKNWETIKMEEFKIRPNEVLAVNAVLRFKNLRDVIPGEEDCPRDGFLKLIRDMNPNVFLSSTVNGSFNAPFFTTRFKEALFHYSALFDLFGATLSKENPERIHFEGEFYGREVMNVIACEGVDRVE 592          
BLAST of CX301053 vs. ExPASy Swiss-Prot
Match: CIGR1_ORYSJ (Chitin-inducible gibberellin-responsive protein 1 OS=Oryza sativa subsp. japonica GN=CIGR1 PE=2 SV=1)

HSP 1 Score: 150.984 bits (380), Expect = 5.977e-36
Identity = 82/233 (35.19%), Postives = 128/233 (54.94%), Query Frame = 3
Query:   18 DILKAYQMSLSAWPFIRMSYHFANQTIRKLAEKATRLHIIDFGICYGFQWPCLIQILSSRPTGPPMLRITGIELPQPGFRPAERVEETGNRLKSYCERFNVPFEYNVIAQKWETIRLEDFKIDRDEVTVVNCVHRMKNLPDDTVVDSSPRDAVLDLIKRINPDVFIHGISNGTYNAPFFLARFREALFHFSAMFDIFDATVPREDAERMLFEREIVGKDALNAIACEGIERVE 716
            ++L   ++  +  P+ +  Y  AN  I +       +HIIDF I  G QW  LIQ L++RP GPP +RITGI+ P   +   E ++  G  LKS  E F +P E+  ++     +  E  +I   E   VN   ++ + PD++V  ++PRD +L ++K ++P V          N   FL RF E + ++SAMF+  DA +PR++ ER+  E+  + KD +N IACEG +RVE
Sbjct:  273 ELLSYMRILYNICPYFKFGYMAANGAIAEALRTENNIHIIDFQIAQGTQWITLIQALAARPGGPPRVRITGIDDPVSEYARGEGLDIVGKMLKSMSEEFKIPLEFTPLSVYATQVTKEMLEIRPGEALSVNFTLQLHHTPDESVDVNNPRDGLLRMVKGLSPKVTTLVEQESHTNTTPFLMRFGETMEYYSAMFESIDANLPRDNKERISVEQHCLAKDIVNIIACEGKDRVE 505          
BLAST of CX301053 vs. ExPASy Swiss-Prot
Match: PAT1_ARATH (Scarecrow-like transcription factor PAT1 OS=Arabidopsis thaliana GN=PAT1 PE=2 SV=1)

HSP 1 Score: 150.599 bits (379), Expect = 7.807e-36
Identity = 76/236 (32.20%), Postives = 128/236 (54.24%), Query Frame = 3
Query:    9 SAADILKAYQMSLSAWPFIRMSYHFANQTIRKLAEKATRLHIIDFGICYGFQWPCLIQILSSRPTGPPMLRITGIELPQPGFRPAERVEETGNRLKSYCERFNVPFEYNVIAQKWETIRLEDFKIDRDEVTVVNCVHRMKNLPDDTVVDSSPRDAVLDLIKRINPDVFIHGISNGTYNAPFFLARFREALFHFSAMFDIFDATVPREDAERMLFEREIVGKDALNAIACEGIERVE 716
            ++ ++L    +     P+ +  Y  AN  I +  ++  R+HIIDF I  G QW  LIQ  ++RP GPP +RITGI+     +     +   GNRL    ++FNVPFE+N ++     ++ ++  +   E   VN    + ++PD++V   + RD +L ++K ++P V          N   F  RF E + +++AMF+  D T+PR+  +R+  E+  + +D +N IACEG +RVE
Sbjct:  189 ASTELLSYMHILYEVCPYFKFGYMSANGAIAEAMKEENRVHIIDFQIGQGSQWVTLIQAFAARPGGPPRIRITGIDDMTSAYARGGGLSIVGNRLAKLAKQFNVPFEFNSVSVSVSEVKPKNLGVRPGEALAVNFAFVLHHMPDESVSTENHRDRLLRMVKSLSPKVVTLVEQESNTNTAAFFPRFMETMNYYAAMFESIDVTLPRDHKQRINVEQHCLARDVVNIIACEGADRVE 424          
BLAST of CX301053 vs. ExPASy Swiss-Prot
Match: CIGR2_ORYSJ (Chitin-inducible gibberellin-responsive protein 2 OS=Oryza sativa subsp. japonica GN=CIGR2 PE=2 SV=1)

HSP 1 Score: 142.124 bits (357), Expect = 2.777e-33
Identity = 79/236 (33.47%), Postives = 127/236 (53.81%), Query Frame = 3
Query:   12 AADILKAYQMSLSAWPFIRMSYHFANQTIRKLAEKATRLHIIDFGICYGFQWPCLIQILSSRPTGPPMLRITGIELPQPGFRPAERVEETGNRLKSYCERFNVPFEYNVIAQKWETIRLEDFKIDRDEVTVVNCVHRMKNLPDDTVVDSSPRDAVLDLIKRINPDVF-IHGISNGTYNAPFFLARFREALFHFSAMFDIFDATVPREDAERMLFEREIVGKDALNAIACEGIERVE 716
            ++D+L        A P+ +  Y  AN  I +  +   R+HIIDF I  G QW  L+Q L++RP GPP +RITGI+     +     +E  G RL        VPFE++ +A     +      +   E   VN    + ++PD++V  ++ RD +L ++K ++P V  +  + + T  AP F  RF E L +++A+F+  D T+PR+D ER+  E+  + ++ +N IACEG ER E
Sbjct:  244 SSDLLSYMHFLYEACPYFKFGYMSANGAIAEAVKGEDRIHIIDFHISQGAQWISLLQALAARPGGPPTVRITGIDDSVSAYARGGGLELVGRRLSHIASLCKVPFEFHPLAISGSKVEAAHLGVIPGEALAVNFTLELHHIPDESVSTANHRDRLLRMVKSLSPKVLTLVEMESNTNTAP-FPQRFAETLDYYTAIFESIDLTLPRDDRERINMEQHCLAREIVNLIACEGEERAE 478          
The following BLAST results are available for this feature:
BLAST of CX301053 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 52
Match NameE-valueIdentityDescription
SCL30_ARATH1.359e-8060.59Scarecrow-like protein 30 OS=Arabidopsis thaliana ... [more]
SCL11_ARATH1.359e-8058.65Scarecrow-like protein 11 OS=Arabidopsis thaliana ... [more]
SCL9_ARATH3.027e-8061.02Scarecrow-like protein 9 OS=Arabidopsis thaliana G... [more]
SCL14_ARATH1.150e-7960.25Scarecrow-like protein 14 OS=Arabidopsis thaliana ... [more]
SCL34_ARATH2.652e-7657.92Scarecrow-like protein 34 OS=Arabidopsis thaliana ... [more]
SCL33_ARATH7.222e-7456.67Scarecrow-like protein 33 OS=Arabidopsis thaliana ... [more]
SCL31_ARATH8.264e-7054.58Scarecrow-like protein 31 OS=Arabidopsis thaliana ... [more]
CIGR1_ORYSJ5.977e-3635.19Chitin-inducible gibberellin-responsive protein 1 ... [more]
PAT1_ARATH7.807e-3632.20Scarecrow-like transcription factor PAT1 OS=Arabid... [more]
CIGR2_ORYSJ2.777e-3333.47Chitin-inducible gibberellin-responsive protein 2 ... [more]

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Properties
Property NameValue
Genbank descriptionC08005C01SK PhyRootSw1 Citrus sinensis cDNA clone C08005C01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX301053 ID=CX301053; Name=CX301053; organism=Citrus sinensis; type=EST; length=718bp
GGCGGACATCTGCCGCAGATATTCTAAAAGCTTACCAGATGTCTCTTTCG
GCGTGGCCCTTTATCAGGATGTCATATCATTTCGCGAACCAGACGATTAG
AAAACTAGCAGAGAAAGCAACAAGGCTTCACATCATTGATTTTGGCATCT
GCTATGGTTTTCAGTGGCCTTGCCTTATTCAGATTCTCTCTAGTCGGCCT
ACTGGACCTCCCATGCTTCGTATCACGGGCATTGAACTACCTCAACCGGG
ATTTAGGCCGGCGGAAAGGGTTGAGGAGACAGGGAATCGCTTGAAAAGTT
ACTGTGAAAGGTTTAATGTACCATTTGAGTACAATGTCATCGCACAGAAA
TGGGAAACTATCCGATTAGAAGATTTTAAGATTGACAGAGATGAGGTGAC
AGTTGTTAACTGTGTGCACCGAATGAAGAATCTACCTGATGACACAGTAG
TGGACAGCAGCCCGAGAGATGCTGTCTTGGACTTGATCAAGAGAATTAAT
CCAGATGTATTCATCCATGGGATTTCTAATGGTACTTACAATGCACCATT
CTTTCTCGCAAGATTCCGGGAGGCACTGTTCCATTTCTCAGCAATGTTTG
ATATTTTTGATGCCACTGTACCTCGCGAAGATGCTGAGAGAATGCTCTTT
GAAAGGGAAATAGTTGGAAAGGACGCGCTGAATGCCATTGCATGCGAAGG
GATAGAGAGGGTGGAAAG
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