CX301051

Overview
NameCX301051
Unique NameCX301051
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length449
Libraries
Library NameType
PhyRootSw1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX301051 vs. ExPASy Swiss-Prot
Match: 1A110_ARATH (Probable aminotransferase ACS10 OS=Arabidopsis thaliana GN=ACS10 PE=2 SV=1)

HSP 1 Score: 186.037 bits (471), Expect = 6.010e-47
Identity = 80/128 (62.50%), Postives = 106/128 (82.81%), Query Frame = 2
Query:    2 SQNLLVSMLSDTKFVQKFININRERLRRLYVKFVAGLRQLGIECAKSNGGFYCWADMSGLISSYSEKGELELWDKLLNVAKVNVTPGSSCHCIEPGWFSFSFTLLTEKDIHVVMERIRRISQTCKSHS 385
            +Q+LL+S +S+ K VQ+F+  NR+RL+ +Y + V GL++LGIEC +SNGGFYCWADM GLISSYSEKGE+ELW+KLLN+ K+NV PGS CHCIEPGWF   F+ L+E+D+ VVM RIR++ +TCKS +
Sbjct:  430 TQHLLISAISNPKNVQRFVKTNRQRLQSIYTELVEGLKELGIECTRSNGGFYCWADMRGLISSYSEKGEIELWNKLLNIGKINVIPGSCCHCIEPGWFRICFSNLSERDVPVVMNRIRKVCETCKSQN 557          
BLAST of CX301051 vs. ExPASy Swiss-Prot
Match: 1A112_ARATH (Probable aminotransferase ACS12 OS=Arabidopsis thaliana GN=ACS12 PE=2 SV=2)

HSP 1 Score: 164.851 bits (416), Expect = 1.434e-40
Identity = 70/125 (56.00%), Postives = 103/125 (82.40%), Query Frame = 2
Query:    5 QNLLVSMLSDTKFVQKFININRERLRRLYVKFVAGLRQLGIECAKSNGGFYCWADMSGLISSYSEKGELELWDKLLNVAKVNVTPGSSCHCIEPGWFSFSFTLLTEKDIHVVMERIRRISQTCKS 379
            Q +L+S+LSD +F++ ++  +R+R+R  +++FV GL+QLGI CA+S GG YCW DMS L++SYSEKGELEL++KLL VAK+N TPG++C+CIEPGWF   FT L ++DI V+MERIR+++++ +S
Sbjct:  371 QRILISLLSDVRFIEGYMAAHRQRIRDKHIRFVEGLKQLGIPCAESGGGLYCWVDMSSLLTSYSEKGELELFEKLLTVAKINATPGTACYCIEPGWFRCCFTALADEDIPVIMERIRQLAESFRS 495          
BLAST of CX301051 vs. ExPASy Swiss-Prot
Match: 1A17_ARATH (1-aminocyclopropane-1-carboxylate synthase 7 OS=Arabidopsis thaliana GN=ACS7 PE=1 SV=1)

HSP 1 Score: 129.028 bits (323), Expect = 8.718e-30
Identity = 55/117 (47.01%), Postives = 80/117 (68.38%), Query Frame = 2
Query:    2 SQNLLVSMLSDTKFVQKFININRERLRRLYVKFVAGLRQLGIECAKSNGGFYCWADMSGLISSYSEKGELELWDKLLNVAKVNVTPGSSCHCIEPGWFSFSFTLLTEKDIHVVMERI 352
            +Q++L SMLSD +F +K+I INRERLRR Y   V GL++ GIEC K N G +CW ++  L+   ++ GEL+LWD +L    +N++PGSSCHC E GWF   F  ++E  + + ++RI
Sbjct:  321 TQHMLASMLSDEEFTEKYIRINRERLRRRYDTIVEGLKKAGIECLKGNAGLFCWMNLGFLLEKKTKDGELQLWDVILKELNLNISPGSSCHCSEVGWFRVCFANMSENTLEIALKRI 437          
BLAST of CX301051 vs. ExPASy Swiss-Prot
Match: 1A13_SOLLC (1-aminocyclopropane-1-carboxylate synthase 3 OS=Solanum lycopersicum GN=ACS3 PE=1 SV=1)

HSP 1 Score: 122.479 bits (306), Expect = 8.160e-28
Identity = 54/131 (41.22%), Postives = 84/131 (64.12%), Query Frame = 2
Query:    2 SQNLLVSMLSDTKFVQKFININRERLRRLYVKFVAGLRQLGIECAKSNGGFYCWADMSGLISSYSEKGELELWDKLLNVAKVNVTPGSSCHCIEPGWFSFSFTLLTEKDIHVVMERIRRISQTCKSHS*NH 394
            +Q LL  MLSD KF +K+I+ N++RL++ +   V GL+  GI C +SN G +CW DM  L+SS +   E++LW K++    +N++PGSSCHC EPGWF   F  ++E  + + M RI+   ++   ++ NH
Sbjct:  308 TQYLLSCMLSDKKFTKKYISENQKRLKKRHAMLVKGLKSAGINCLESNAGLFCWVDMRHLLSSNNFDAEMDLWKKIVYDVGLNISPGSSCHCTEPGWFRVCFANMSEDTLDLAMRRIKDFVESTAPNATNH 438          
BLAST of CX301051 vs. ExPASy Swiss-Prot
Match: 1A18_ARATH (1-aminocyclopropane-1-carboxylate synthase 8 OS=Arabidopsis thaliana GN=ACS8 PE=1 SV=1)

HSP 1 Score: 122.094 bits (305), Expect = 1.066e-27
Identity = 53/119 (44.54%), Postives = 80/119 (67.23%), Query Frame = 2
Query:    2 SQNLLVSMLSDTKFVQKFININRERLRRLYVKFVAGLRQLGIECAKSNGGFYCWADMSGLISSYSEKGELELWDKLLNVAKVNVTPGSSCHCIEPGWFSFSFTLLTEKDIHVVMERIRR 358
            +Q LL ++LSD  F + ++  N+ RL+  + K V+GL   GIEC KSN G +CW DM  L+ S + + E+ELW K++   K+N++PGSSCHC EPGWF   F  L+E+ + V ++R++R
Sbjct:  308 TQYLLSALLSDKTFTKNYLEENQIRLKNRHKKLVSGLEAAGIECLKSNAGLFCWVDMRHLLKSNTFEAEIELWKKIVYEVKLNISPGSSCHCNEPGWFRVCFANLSEETLKVALDRLKR 426          
BLAST of CX301051 vs. ExPASy Swiss-Prot
Match: 1A19_ARATH (1-aminocyclopropane-1-carboxylate synthase 9 OS=Arabidopsis thaliana GN=ACS9 PE=1 SV=1)

HSP 1 Score: 117.857 bits (294), Expect = 2.010e-26
Identity = 52/126 (41.27%), Postives = 81/126 (64.29%), Query Frame = 2
Query:    2 SQNLLVSMLSDTKFVQKFININRERLRRLYVKFVAGLRQLGIECAKSNGGFYCWADMSGLISSYSEKGELELWDKLLNVAKVNVTPGSSCHCIEPGWFSFSFTLLTEKDIHVVMERIRRISQTCKS 379
            +Q LL ++LSD KF   +++ N++RL+    K V+GL   GI C KSN G +CW DM  L+ + + + ELELW K++   K+N++PGSSCHC EPGWF   F  ++E  + + M+R++   ++  S
Sbjct:  308 TQYLLSALLSDKKFTSTYLDENQKRLKIRQKKLVSGLEAAGITCLKSNAGLFCWVDMRHLLDTNTFEAELELWKKIVYDVKLNISPGSSCHCTEPGWFRVCFANMSEDTLDLAMKRLKEYVESTDS 433          
BLAST of CX301051 vs. ExPASy Swiss-Prot
Match: 1A14_ARATH (1-aminocyclopropane-1-carboxylate synthase 4 OS=Arabidopsis thaliana GN=ACS4 PE=1 SV=1)

HSP 1 Score: 117.087 bits (292), Expect = 3.428e-26
Identity = 49/120 (40.83%), Postives = 80/120 (66.67%), Query Frame = 2
Query:    2 SQNLLVSMLSDTKFVQKFININRERLRRLYVKFVAGLRQLGIECAKSNGGFYCWADMSGLISSYSEKGELELWDKLLNVAKVNVTPGSSCHCIEPGWFSFSFTLLTEKDIHVVMERIRRI 361
            +Q LL S+LSD KF + ++  N++RL+    K V GL  +GI+C KSN G +CW DM  L+ S + + E++LW K++   K+N++PGSSCHC EPGWF   F  + ++ + + ++R++ +
Sbjct:  309 TQYLLSSLLSDKKFTKNYLRENQKRLKNRQRKLVLGLEAIGIKCLKSNAGLFCWVDMRPLLRSKTFEAEMDLWKKIVYEVKLNISPGSSCHCEEPGWFRVCFANMIDETLKLALKRLKML 428          
BLAST of CX301051 vs. ExPASy Swiss-Prot
Match: 1A11_ORYSJ (1-aminocyclopropane-1-carboxylate synthase 1 OS=Oryza sativa subsp. japonica GN=ACC1 PE=2 SV=1)

HSP 1 Score: 117.087 bits (292), Expect = 3.428e-26
Identity = 51/118 (43.22%), Postives = 77/118 (65.25%), Query Frame = 2
Query:    2 SQNLLVSMLSDTKFVQKFININRERLRRLYVKFVAGLRQLGIECAKSNGGFYCWADMSGLISSYSEKGELELWDKLLNVAKVNVTPGSSCHCIEPGWFSFSFTLLTEKDIHVVMERIR 355
            +Q LL ++L D  F + ++  N+ R++  + + V GLR++GI C  SN G +CW DMS L+ S S  GE+ELW K++    +N++PGSSCHC EPGWF   F  ++ K + V M+R+R
Sbjct:  322 TQYLLAALLGDRDFTRSYVAENKRRIKERHDQLVDGLREIGIGCLPSNAGLFCWVDMSHLMRSRSFAGEMELWKKVVFEVGLNISPGSSCHCREPGWFRVCFANMSAKTLDVAMQRLR 439          
BLAST of CX301051 vs. ExPASy Swiss-Prot
Match: 1A11_ORYSI (1-aminocyclopropane-1-carboxylate synthase 1 OS=Oryza sativa subsp. indica GN=ACC1 PE=2 SV=2)

HSP 1 Score: 117.087 bits (292), Expect = 3.428e-26
Identity = 51/118 (43.22%), Postives = 77/118 (65.25%), Query Frame = 2
Query:    2 SQNLLVSMLSDTKFVQKFININRERLRRLYVKFVAGLRQLGIECAKSNGGFYCWADMSGLISSYSEKGELELWDKLLNVAKVNVTPGSSCHCIEPGWFSFSFTLLTEKDIHVVMERIR 355
            +Q LL ++L D  F + ++  N+ R++  + + V GLR++GI C  SN G +CW DMS L+ S S  GE+ELW K++    +N++PGSSCHC EPGWF   F  ++ K + V M+R+R
Sbjct:  322 TQYLLAALLGDRDFTRSYVAENKRRIKERHDQLVDGLREIGIGCLPSNAGLFCWVDMSHLMRSRSFAGEMELWKKVVFEVGLNISPGSSCHCREPGWFRVCFANMSAKTLDVAMQRLR 439          
BLAST of CX301051 vs. ExPASy Swiss-Prot
Match: 1A1C_MALDO (1-aminocyclopropane-1-carboxylate synthase OS=Malus domestica GN=ACS-1 PE=1 SV=2)

HSP 1 Score: 115.931 bits (289), Expect = 7.638e-26
Identity = 50/118 (42.37%), Postives = 77/118 (65.25%), Query Frame = 2
Query:    2 SQNLLVSMLSDTKFVQKFININRERLRRLYVKFVAGLRQLGIECAKSNGGFYCWADMSGLISSYSEKGELELWDKLLNVAKVNVTPGSSCHCIEPGWFSFSFTLLTEKDIHVVMERIR 355
            +Q+LL +MLSD K  + +I  N +RL++   K V+GL++ GI C   N G +CW DM  L+ S + + E+ELW K++    +N++PGSSCHC EPGWF   F  L E+ + + M+R++
Sbjct:  309 TQHLLSAMLSDKKLTKNYIAENHKRLKQRQKKLVSGLQKSGISCLNGNAGLFCWVDMRHLLRSNTFEAEMELWKKIVYEVHLNISPGSSCHCTEPGWFRVCFANLPERTLDLAMQRLK 426          
The following BLAST results are available for this feature:
BLAST of CX301051 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 26
Match NameE-valueIdentityDescription
1A110_ARATH6.010e-4762.50Probable aminotransferase ACS10 OS=Arabidopsis tha... [more]
1A112_ARATH1.434e-4056.00Probable aminotransferase ACS12 OS=Arabidopsis tha... [more]
1A17_ARATH8.718e-3047.011-aminocyclopropane-1-carboxylate synthase 7 OS=Ar... [more]
1A13_SOLLC8.160e-2841.221-aminocyclopropane-1-carboxylate synthase 3 OS=So... [more]
1A18_ARATH1.066e-2744.541-aminocyclopropane-1-carboxylate synthase 8 OS=Ar... [more]
1A19_ARATH2.010e-2641.271-aminocyclopropane-1-carboxylate synthase 9 OS=Ar... [more]
1A14_ARATH3.428e-2640.831-aminocyclopropane-1-carboxylate synthase 4 OS=Ar... [more]
1A11_ORYSJ3.428e-2643.221-aminocyclopropane-1-carboxylate synthase 1 OS=Or... [more]
1A11_ORYSI3.428e-2643.221-aminocyclopropane-1-carboxylate synthase 1 OS=Or... [more]
1A1C_MALDO7.638e-2642.371-aminocyclopropane-1-carboxylate synthase OS=Malu... [more]

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Properties
Property NameValue
Genbank descriptionC08005B11SK PhyRootSw1 Citrus sinensis cDNA clone C08005B11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX301051 ID=CX301051; Name=CX301051; organism=Citrus sinensis; type=EST; length=449bp
ATCCCAGAATTTGCTTGTGTCGATGCTTTCAGATACAAAATTTGTTCAAA
AGTTCATCAATATTAACAGGGAGAGGCTTCGAAGATTGTATGTCAAGTTT
GTGGCAGGATTGAGGCAGTTGGGCATTGAGTGCGCTAAGAGTAATGGGGG
TTTCTACTGTTGGGCTGACATGAGCGGACTGATCAGCTCTTACAGCGAGA
AGGGAGAGCTTGAGCTTTGGGATAAGTTGTTGAATGTGGCTAAGGTTAAT
GTTACTCCTGGATCTTCTTGTCACTGTATAGAACCGGGATGGTTCAGTTT
CAGTTTTACTTTGTTGACTGAAAAAGATATTCATGTAGTTATGGAACGAA
TAAGAAGAATTTCTCAAACCTGTAAATCTCACAGTTGAAATCACTTGGAA
TGCTATTTAATAGAATGAAATCGCGTACAAAAAAAAAAAAAAAAAAAAA
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