CX301048
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CX301048 vs. ExPASy Swiss-Prot
Match: PUB21_ARATH (U-box domain-containing protein 21 OS=Arabidopsis thaliana GN=PUB21 PE=2 SV=1) HSP 1 Score: 124.79 bits (312), Expect = 2.746e-28 Identity = 63/137 (45.99%), Postives = 101/137 (73.72%), Query Frame = 2 Query: 2 LLLEMLVDAQRSLCEKALSVLDGLCSSDYGRGDAYNNSLIFPVIVKKILRVSDLATEFSVSILWKLCKNEEREEKTAFAEALQVGAFQKLLLLLQVGCADKTKEHVSELLKLLNPH-RARLECIDSM-DFKDLKRPF 406 + +EM+VDA+ S+CEKAL+VLD +C +++GR + N+L+ P++VKKI +VS+LAT S+S++ KL K A +A+++GAFQK+LL+LQVG ++TKE +ELLK++N + +C+DS+ +FK +K+PF Sbjct: 302 ITVEMIVDAENSVCEKALAVLDAICETEHGREEVRKNALVMPLLVKKIAKVSELATRSSMSMILKLWKT---GNTVAVEDAVRLGAFQKVLLVLQVGYGEETKEKATELLKMMNTQMKLMSDCVDSLKEFKYIKKPF 435
BLAST of CX301048 vs. ExPASy Swiss-Prot
Match: PUB20_ARATH (U-box domain-containing protein 20 OS=Arabidopsis thaliana GN=PUB20 PE=2 SV=1) HSP 1 Score: 117.087 bits (292), Expect = 5.726e-26 Identity = 61/140 (43.57%), Postives = 97/140 (69.29%), Query Frame = 2 Query: 2 LLLEMLVDAQRSLCEKALSVLDGLCSSDYGRGDAYNNSLIFPVIVKKILRVSDLATEFSVSILWKLCKNEEREEKTAFAEALQVGAFQKLLLLLQVGCADKTKEHVSELLKLLNPHRARLECID-----SMDFKDLKRPF 406 + +EMLVD++ S+CEKAL+VL+ +C + GR N L+ P++VKKIL++S+ + VS++WK+CK+ + E EAL++GAF+KL+++LQVGC + TKE V+ELLK++N +D S++FK +K+PF Sbjct: 297 ITVEMLVDSENSVCEKALTVLNVICETKEGREKVRRNKLVIPILVKKILKISE--KKDLVSVMWKVCKSGDGSE---VEEALRLGAFKKLVVMLQVGCGEGTKEKVTELLKMMNKVMKMNGFVDRSYSSSIEFKHVKKPF 431
BLAST of CX301048 vs. ExPASy Swiss-Prot
Match: PUB22_ARATH (U-box domain-containing protein 22 OS=Arabidopsis thaliana GN=PUB22 PE=2 SV=1) HSP 1 Score: 73.1738 bits (178), Expect = 9.482e-13 Identity = 46/116 (39.66%), Postives = 65/116 (56.03%), Query Frame = 2 Query: 2 LLLEMLVD----AQRSLCEKALSVLDGLCSSDYGRGDAYNNSLIFPVIVKKILRVSDLATEFSVSILWKLCKNEEREEKTAFAEALQVGAFQKLLLLLQVGCADKTKEHVSELLKL 337 +++E+L+D ++R E A+ VLD LC GR + N+ V+ KKILRVS + +E +V +L L + E LQ+G KL L+LQV C +KTKE ELLKL Sbjct: 301 MIIELLMDDTFSSERRNSEMAMVVLDMLCQCAEGRAEFLNHGAAIAVVSKKILRVSQITSERAVRVL--LSVGRFCATPSLLQEMLQLGVVAKLCLVLQVSCGNKTKEKAKELLKL 414
BLAST of CX301048 vs. ExPASy Swiss-Prot
Match: PUB30_ARATH (U-box domain-containing protein 30 OS=Arabidopsis thaliana GN=PUB30 PE=2 SV=1) HSP 1 Score: 70.4774 bits (171), Expect = 6.146e-12 Identity = 42/115 (36.52%), Postives = 64/115 (55.65%), Query Frame = 2 Query: 5 LLEMLVDAQRSLCEKALSVLDGLCSSDYGRGDAYNNSLIFPVIVKKILRVSDLATEFSVSILWKLCKNEEREEKTAFAEALQVGAFQKLLLLLQVGCADKTKEHVSELLKLLNPH 349 L+++L E AL VLD LC+ GR +++ P V+ ++RVS+ T +++SILW +CK E A++VG KLLL++Q GC K+ +ELLKL + H Sbjct: 320 LVDILPSLDPECLELALFVLDALCTDVEGRVAVKDSANTIPYTVRVLMRVSENCTNYALSILWSVCKLAPEE---CSPLAVEVGLAAKLLLVIQSGCDAALKQRSAELLKLCSLH 431
BLAST of CX301048 vs. ExPASy Swiss-Prot
Match: PUB23_ARATH (U-box domain-containing protein 23 OS=Arabidopsis thaliana GN=PUB23 PE=2 SV=1) HSP 1 Score: 69.3218 bits (168), Expect = 1.369e-11 Identity = 46/116 (39.66%), Postives = 63/116 (54.31%), Query Frame = 2 Query: 2 LLLEMLVD----AQRSLCEKALSVLDGLCSSDYGRGDAYNNSLIFPVIVKKILRVSDLATEFSVSILWKLCKNEEREEKTAFAEALQVGAFQKLLLLLQVGCADKTKEHVSELLKL 337 +++E+L+D ++R E A+ VLD LC GR + N+ V+ KKILRVS A++ +V +L L E LQ+G KL L+LQV C KTKE ELLKL Sbjct: 277 VIIELLMDESFTSERRGPEMAMVVLDLLCQCAEGRAEFLNHGAAIAVVCKKILRVSQTASDRAVRVL--LSVGRFCATPALLHEMLQLGVVAKLCLVLQVSCGGKTKEKAKELLKL 390
BLAST of CX301048 vs. ExPASy Swiss-Prot
Match: PUB31_ARATH (U-box domain-containing protein 31 OS=Arabidopsis thaliana GN=PUB31 PE=2 SV=1) HSP 1 Score: 68.5514 bits (166), Expect = 2.335e-11 Identity = 41/115 (35.65%), Postives = 63/115 (54.78%), Query Frame = 2 Query: 5 LLEMLVDAQRSLCEKALSVLDGLCSSDYGRGDAYNNSLIFPVIVKKILRVSDLATEFSVSILWKLCKNEEREEKTAFAEALQVGAFQKLLLLLQVGCADKTKEHVSELLKLLNPH 349 L+++L E AL VLD LC GR ++ P V+ +++VS+ T +++SILW +CK E + A++VG KLLL++Q GC K+ +ELLKL + H Sbjct: 316 LVDVLPCLDVECLESALFVLDSLCLESEGRIALKDSVNTIPHTVRLLMKVSEKCTNYAISILWSVCKLASEE---CSSLAVEVGLAAKLLLVIQSGCDPALKQRSAELLKLCSLH 427
BLAST of CX301048 vs. ExPASy Swiss-Prot
Match: PUB25_ARATH (U-box domain-containing protein 25 OS=Arabidopsis thaliana GN=PUB25 PE=2 SV=1) HSP 1 Score: 68.5514 bits (166), Expect = 2.335e-11 Identity = 42/113 (37.17%), Postives = 63/113 (55.75%), Query Frame = 2 Query: 2 LLLEMLVDAQRSLCEKALSVLDGLCSSDYGRGDAYNNSLIFPVIVKKILRVSDLATEFSVSILWKLCKNEEREEKTAFAEALQVGAFQKLLLLLQVGCADKTKEHVSELLKLL 340 L+ + D R E+AL+ ++ LC + G ++L P++VK ILRVSD ATE++ L LC EER + EA G +LLL++Q C ++ K+ +LLKLL Sbjct: 288 LIDRLAADFDRCDTERALATVELLCRTPEGCAAFGEHALTVPLLVKTILRVSDRATEYAAGALLALCTAEERWRE----EAAGAGVVVQLLLMVQSECTERAKKKAQKLLKLL 396 The following BLAST results are available for this feature:
BLAST of CX301048 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 7
Properties
Sequences
The
following sequences are available for this feature:
EST sequence >CX301048 ID=CX301048; Name=CX301048; organism=Citrus sinensis; type=EST; length=551bpback to top |