CX301048

Overview
NameCX301048
Unique NameCX301048
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length551
Libraries
Library NameType
PhyRootSw1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX301048 vs. ExPASy Swiss-Prot
Match: PUB21_ARATH (U-box domain-containing protein 21 OS=Arabidopsis thaliana GN=PUB21 PE=2 SV=1)

HSP 1 Score: 124.79 bits (312), Expect = 2.746e-28
Identity = 63/137 (45.99%), Postives = 101/137 (73.72%), Query Frame = 2
Query:    2 LLLEMLVDAQRSLCEKALSVLDGLCSSDYGRGDAYNNSLIFPVIVKKILRVSDLATEFSVSILWKLCKNEEREEKTAFAEALQVGAFQKLLLLLQVGCADKTKEHVSELLKLLNPH-RARLECIDSM-DFKDLKRPF 406
            + +EM+VDA+ S+CEKAL+VLD +C +++GR +   N+L+ P++VKKI +VS+LAT  S+S++ KL K        A  +A+++GAFQK+LL+LQVG  ++TKE  +ELLK++N   +   +C+DS+ +FK +K+PF
Sbjct:  302 ITVEMIVDAENSVCEKALAVLDAICETEHGREEVRKNALVMPLLVKKIAKVSELATRSSMSMILKLWKT---GNTVAVEDAVRLGAFQKVLLVLQVGYGEETKEKATELLKMMNTQMKLMSDCVDSLKEFKYIKKPF 435          
BLAST of CX301048 vs. ExPASy Swiss-Prot
Match: PUB20_ARATH (U-box domain-containing protein 20 OS=Arabidopsis thaliana GN=PUB20 PE=2 SV=1)

HSP 1 Score: 117.087 bits (292), Expect = 5.726e-26
Identity = 61/140 (43.57%), Postives = 97/140 (69.29%), Query Frame = 2
Query:    2 LLLEMLVDAQRSLCEKALSVLDGLCSSDYGRGDAYNNSLIFPVIVKKILRVSDLATEFSVSILWKLCKNEEREEKTAFAEALQVGAFQKLLLLLQVGCADKTKEHVSELLKLLNPHRARLECID-----SMDFKDLKRPF 406
            + +EMLVD++ S+CEKAL+VL+ +C +  GR     N L+ P++VKKIL++S+   +  VS++WK+CK+ +  E     EAL++GAF+KL+++LQVGC + TKE V+ELLK++N        +D     S++FK +K+PF
Sbjct:  297 ITVEMLVDSENSVCEKALTVLNVICETKEGREKVRRNKLVIPILVKKILKISE--KKDLVSVMWKVCKSGDGSE---VEEALRLGAFKKLVVMLQVGCGEGTKEKVTELLKMMNKVMKMNGFVDRSYSSSIEFKHVKKPF 431          
BLAST of CX301048 vs. ExPASy Swiss-Prot
Match: PUB22_ARATH (U-box domain-containing protein 22 OS=Arabidopsis thaliana GN=PUB22 PE=2 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 9.482e-13
Identity = 46/116 (39.66%), Postives = 65/116 (56.03%), Query Frame = 2
Query:    2 LLLEMLVD----AQRSLCEKALSVLDGLCSSDYGRGDAYNNSLIFPVIVKKILRVSDLATEFSVSILWKLCKNEEREEKTAFAEALQVGAFQKLLLLLQVGCADKTKEHVSELLKL 337
            +++E+L+D    ++R   E A+ VLD LC    GR +  N+     V+ KKILRVS + +E +V +L  L         +   E LQ+G   KL L+LQV C +KTKE   ELLKL
Sbjct:  301 MIIELLMDDTFSSERRNSEMAMVVLDMLCQCAEGRAEFLNHGAAIAVVSKKILRVSQITSERAVRVL--LSVGRFCATPSLLQEMLQLGVVAKLCLVLQVSCGNKTKEKAKELLKL 414          
BLAST of CX301048 vs. ExPASy Swiss-Prot
Match: PUB30_ARATH (U-box domain-containing protein 30 OS=Arabidopsis thaliana GN=PUB30 PE=2 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 6.146e-12
Identity = 42/115 (36.52%), Postives = 64/115 (55.65%), Query Frame = 2
Query:    5 LLEMLVDAQRSLCEKALSVLDGLCSSDYGRGDAYNNSLIFPVIVKKILRVSDLATEFSVSILWKLCKNEEREEKTAFAEALQVGAFQKLLLLLQVGCADKTKEHVSELLKLLNPH 349
            L+++L        E AL VLD LC+   GR    +++   P  V+ ++RVS+  T +++SILW +CK    E       A++VG   KLLL++Q GC    K+  +ELLKL + H
Sbjct:  320 LVDILPSLDPECLELALFVLDALCTDVEGRVAVKDSANTIPYTVRVLMRVSENCTNYALSILWSVCKLAPEE---CSPLAVEVGLAAKLLLVIQSGCDAALKQRSAELLKLCSLH 431          
BLAST of CX301048 vs. ExPASy Swiss-Prot
Match: PUB23_ARATH (U-box domain-containing protein 23 OS=Arabidopsis thaliana GN=PUB23 PE=2 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 1.369e-11
Identity = 46/116 (39.66%), Postives = 63/116 (54.31%), Query Frame = 2
Query:    2 LLLEMLVD----AQRSLCEKALSVLDGLCSSDYGRGDAYNNSLIFPVIVKKILRVSDLATEFSVSILWKLCKNEEREEKTAFAEALQVGAFQKLLLLLQVGCADKTKEHVSELLKL 337
            +++E+L+D    ++R   E A+ VLD LC    GR +  N+     V+ KKILRVS  A++ +V +L  L             E LQ+G   KL L+LQV C  KTKE   ELLKL
Sbjct:  277 VIIELLMDESFTSERRGPEMAMVVLDLLCQCAEGRAEFLNHGAAIAVVCKKILRVSQTASDRAVRVL--LSVGRFCATPALLHEMLQLGVVAKLCLVLQVSCGGKTKEKAKELLKL 390          
BLAST of CX301048 vs. ExPASy Swiss-Prot
Match: PUB31_ARATH (U-box domain-containing protein 31 OS=Arabidopsis thaliana GN=PUB31 PE=2 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 2.335e-11
Identity = 41/115 (35.65%), Postives = 63/115 (54.78%), Query Frame = 2
Query:    5 LLEMLVDAQRSLCEKALSVLDGLCSSDYGRGDAYNNSLIFPVIVKKILRVSDLATEFSVSILWKLCKNEEREEKTAFAEALQVGAFQKLLLLLQVGCADKTKEHVSELLKLLNPH 349
            L+++L        E AL VLD LC    GR    ++    P  V+ +++VS+  T +++SILW +CK    E     + A++VG   KLLL++Q GC    K+  +ELLKL + H
Sbjct:  316 LVDVLPCLDVECLESALFVLDSLCLESEGRIALKDSVNTIPHTVRLLMKVSEKCTNYAISILWSVCKLASEE---CSSLAVEVGLAAKLLLVIQSGCDPALKQRSAELLKLCSLH 427          
BLAST of CX301048 vs. ExPASy Swiss-Prot
Match: PUB25_ARATH (U-box domain-containing protein 25 OS=Arabidopsis thaliana GN=PUB25 PE=2 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 2.335e-11
Identity = 42/113 (37.17%), Postives = 63/113 (55.75%), Query Frame = 2
Query:    2 LLLEMLVDAQRSLCEKALSVLDGLCSSDYGRGDAYNNSLIFPVIVKKILRVSDLATEFSVSILWKLCKNEEREEKTAFAEALQVGAFQKLLLLLQVGCADKTKEHVSELLKLL 340
            L+  +  D  R   E+AL+ ++ LC +  G      ++L  P++VK ILRVSD ATE++   L  LC  EER  +    EA   G   +LLL++Q  C ++ K+   +LLKLL
Sbjct:  288 LIDRLAADFDRCDTERALATVELLCRTPEGCAAFGEHALTVPLLVKTILRVSDRATEYAAGALLALCTAEERWRE----EAAGAGVVVQLLLMVQSECTERAKKKAQKLLKLL 396          
The following BLAST results are available for this feature:
BLAST of CX301048 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 7
Match NameE-valueIdentityDescription
PUB21_ARATH2.746e-2845.99U-box domain-containing protein 21 OS=Arabidopsis ... [more]
PUB20_ARATH5.726e-2643.57U-box domain-containing protein 20 OS=Arabidopsis ... [more]
PUB22_ARATH9.482e-1339.66U-box domain-containing protein 22 OS=Arabidopsis ... [more]
PUB30_ARATH6.146e-1236.52U-box domain-containing protein 30 OS=Arabidopsis ... [more]
PUB23_ARATH1.369e-1139.66U-box domain-containing protein 23 OS=Arabidopsis ... [more]
PUB31_ARATH2.335e-1135.65U-box domain-containing protein 31 OS=Arabidopsis ... [more]
PUB25_ARATH2.335e-1137.17U-box domain-containing protein 25 OS=Arabidopsis ... [more]
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Properties
Property NameValue
Genbank descriptionC08005B08SK PhyRootSw1 Citrus sinensis cDNA clone C08005B08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX301048 ID=CX301048; Name=CX301048; organism=Citrus sinensis; type=EST; length=551bp
ATTGCTGCTAGAAATGCTTGTCGATGCTCAACGAAGCCTATGCGAGAAGG
CGTTGAGTGTTCTCGACGGACTTTGCAGCAGTGATTATGGGAGAGGAGAT
GCCTACAATAATTCTTTAATATTCCCGGTTATTGTGAAGAAAATACTGCG
AGTTTCAGATTTGGCGACGGAGTTCTCAGTCTCCATTCTGTGGAAGCTAT
GCAAGAATGAAGAAAGAGAAGAGAAAACTGCTTTTGCCGAAGCGCTTCAA
GTGGGTGCTTTTCAGAAGCTGTTGTTGCTTTTGCAAGTTGGTTGTGCTGA
CAAGACGAAGGAGCATGTGTCTGAGTTGCTGAAGTTGTTGAATCCTCATA
GAGCTAGATTGGAATGCATTGATTCCATGGATTTCAAGGACCTGAAAAGG
CCGTTTTGATTCAAGATTACCAATTTCAAGGGGATTTAGAGATTTTTTTT
TTCCATCAACATTTATACAGTTCAATAGTGTACAAAAAAAATACAGATCA
AACATATAAAGCACAGTTCATACAAATTCCGTACAAAAAAAAAAAAAAAA
A
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