CX301047

Overview
NameCX301047
Unique NameCX301047
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length699
Libraries
Library NameType
PhyRootSw1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX301047 vs. ExPASy Swiss-Prot
Match: RL13A_CYAPA (60S ribosomal protein L13a OS=Cyanophora paradoxa PE=2 SV=1)

HSP 1 Score: 224.557 bits (571), Expect = 4.134e-58
Identity = 102/158 (64.56%), Postives = 127/158 (80.38%), Query Frame = 1
Query:   43 FKKLVVIDCRNHILGRLASVVAKELLSGQKITCVRTEGICITGSFLRNRIKYHFFLDKKKNTNPTHGPFHFRSPSKIFWRTVRGMVPHKTARGTKALRLLKCFEGVPPPYDKTKRVVVPEALRPVRLGPTRKFTVLARLSAEVGWKHRSVVERLEAKR 516
            F+K+VV+DCR H+LGRLA+ +AKELL+GQ++  VRTE I I+GS  RN++K+H FL K+ NTNP  GPFHFRSP++I WRT+RGM+PHKT RG  AL  LK FEGVPPPYDK KR+V+P+ALR +RL P RKF VL RL+ EVGW+H  +V RLE KR
Sbjct:    2 FEKVVVVDCRGHLLGRLAATLAKELLNGQRVVAVRTEEINISGSLFRNKLKFHAFLKKRMNTNPRRGPFHFRSPARILWRTIRGMIPHKTPRGAAALERLKAFEGVPPPYDKMKRMVIPQALRVLRLKPGRKFCVLGRLATEVGWRHSDLVTRLEEKR 159          
BLAST of CX301047 vs. ExPASy Swiss-Prot
Match: RL13A_BOVIN (60S ribosomal protein L13a OS=Bos taurus GN=RPL13A PE=2 SV=3)

HSP 1 Score: 206.838 bits (525), Expect = 8.920e-53
Identity = 96/156 (61.54%), Postives = 125/156 (80.13%), Query Frame = 1
Query:   49 KLVVIDCRNHILGRLASVVAKELLSGQKITCVRTEGICITGSFLRNRIKYHFFLDKKKNTNPTHGPFHFRSPSKIFWRTVRGMVPHKTARGTKALRLLKCFEGVPPPYDKTKRVVVPEALRPVRLGPTRKFTVLARLSAEVGWKHRSVVERLEAKR 516
            +++V+D R H+LGRLA++VAK++L G+K+  VR EGI I+G+F RN++KY  FL K+ NTNP+ GP+HFR+PS+IFWRTVRGM+PHKT RG  AL  LK F+G+PPPYDK KR+VVP AL+ VRL PTRKF  L RL+ EVGWK+++V   LE KR
Sbjct:    5 QVLVLDGRGHLLGRLAAIVAKQVLLGRKVVVVRCEGINISGNFYRNKLKYLAFLRKRMNTNPSRGPYHFRAPSRIFWRTVRGMLPHKTKRGQAALERLKVFDGIPPPYDKKKRMVVPAALKVVRLKPTRKFAYLGRLAHEVGWKYQAVTATLEEKR 160          
BLAST of CX301047 vs. ExPASy Swiss-Prot
Match: RL13A_MACFA (60S ribosomal protein L13a OS=Macaca fascicularis GN=RPL13A PE=2 SV=3)

HSP 1 Score: 206.068 bits (523), Expect = 1.522e-52
Identity = 96/156 (61.54%), Postives = 125/156 (80.13%), Query Frame = 1
Query:   49 KLVVIDCRNHILGRLASVVAKELLSGQKITCVRTEGICITGSFLRNRIKYHFFLDKKKNTNPTHGPFHFRSPSKIFWRTVRGMVPHKTARGTKALRLLKCFEGVPPPYDKTKRVVVPEALRPVRLGPTRKFTVLARLSAEVGWKHRSVVERLEAKR 516
            +++V+D R H+LGRLA++VAK++L G+K+  VR EGI I+G+F RN++KY  FL K+ NTNP+ GP+HFR+PS+IFWRTVRGM+PHKT RG  AL  LK F+G+PPPYDK KR+VVP AL+ VRL PTRKF  L RL+ EVGWK+++V   LE KR
Sbjct:    5 QVLVLDGRGHLLGRLAAIVAKQVLLGRKVVVVRCEGINISGNFYRNKLKYLAFLRKRMNTNPSRGPYHFRAPSRIFWRTVRGMLPHKTKRGQAALDRLKVFDGIPPPYDKKKRMVVPAALKVVRLKPTRKFAYLGRLAHEVGWKYQAVTTTLEEKR 160          
BLAST of CX301047 vs. ExPASy Swiss-Prot
Match: RL13A_HUMAN (60S ribosomal protein L13a OS=Homo sapiens GN=RPL13A PE=1 SV=2)

HSP 1 Score: 206.068 bits (523), Expect = 1.522e-52
Identity = 96/156 (61.54%), Postives = 125/156 (80.13%), Query Frame = 1
Query:   49 KLVVIDCRNHILGRLASVVAKELLSGQKITCVRTEGICITGSFLRNRIKYHFFLDKKKNTNPTHGPFHFRSPSKIFWRTVRGMVPHKTARGTKALRLLKCFEGVPPPYDKTKRVVVPEALRPVRLGPTRKFTVLARLSAEVGWKHRSVVERLEAKR 516
            +++V+D R H+LGRLA++VAK++L G+K+  VR EGI I+G+F RN++KY  FL K+ NTNP+ GP+HFR+PS+IFWRTVRGM+PHKT RG  AL  LK F+G+PPPYDK KR+VVP AL+ VRL PTRKF  L RL+ EVGWK+++V   LE KR
Sbjct:    5 QVLVLDGRGHLLGRLAAIVAKQVLLGRKVVVVRCEGINISGNFYRNKLKYLAFLRKRMNTNPSRGPYHFRAPSRIFWRTVRGMLPHKTKRGQAALDRLKVFDGIPPPYDKKKRMVVPAALKVVRLKPTRKFAYLGRLAHEVGWKYQAVTATLEEKR 160          
BLAST of CX301047 vs. ExPASy Swiss-Prot
Match: RL16_NEUCR (60S ribosomal protein L16 OS=Neurospora crassa GN=rpl-16 PE=3 SV=1)

HSP 1 Score: 205.297 bits (521), Expect = 2.595e-52
Identity = 99/162 (61.11%), Postives = 125/162 (77.16%), Query Frame = 1
Query:   34 MTEFKKLVVIDCRNHILGRLASVVAKELLSGQKITCVRTEGICITGSFLRNRIKYHFFLDKKKNTNPTHG-PFHFRSPSKIFWRTVRGMVPHKTARGTKALRLLKCFEGVPPPYDKTKRVVVPEALRPVRLGPTRKFTVLARLSAEVGWKHRSVVERLEAKR 516
            M+ F+ +VVID + H+LGRLAS+VAK+LL+GQKI  VR E + I+G F R ++KYH +L K    NPT G PFHFR+PS+IF++ VRGM+PHKTARG  AL  LK FEGVPPPYDK K++VVP+ALR +RL P RKF  + RLS+EVGWK+  VV RLE +R
Sbjct:    1 MSSFESVVVIDGKGHLLGRLASIVAKQLLNGQKIVVVRCEALNISGEFFRAKLKYHSYLRKMTRYNPTRGGPFHFRAPSRIFYKAVRGMIPHKTARGAAALERLKVFEGVPPPYDKKKKMVVPQALRVLRLQPGRKFCTVGRLSSEVGWKYEDVVSRLEERR 162          
BLAST of CX301047 vs. ExPASy Swiss-Prot
Match: RL13A_RAT (60S ribosomal protein L13a OS=Rattus norvegicus GN=Rpl13a PE=1 SV=2)

HSP 1 Score: 204.912 bits (520), Expect = 3.390e-52
Identity = 95/156 (60.90%), Postives = 125/156 (80.13%), Query Frame = 1
Query:   49 KLVVIDCRNHILGRLASVVAKELLSGQKITCVRTEGICITGSFLRNRIKYHFFLDKKKNTNPTHGPFHFRSPSKIFWRTVRGMVPHKTARGTKALRLLKCFEGVPPPYDKTKRVVVPEALRPVRLGPTRKFTVLARLSAEVGWKHRSVVERLEAKR 516
            +++V+D R+H+LGRLA++VAK++L G+K+  VR EGI I+G+F RN++KY  FL K+ NTNP+ GP+HFR+PS+IFWRTVRGM+PHKT RG  AL  LK  +G+PPPYDK KR+VVP AL+ VRL PTRKF  L RL+ EVGWK+++V   LE KR
Sbjct:    5 QVLVLDGRSHLLGRLAAIVAKQVLLGRKVVVVRCEGINISGNFYRNKLKYLAFLRKRMNTNPSRGPYHFRAPSRIFWRTVRGMLPHKTKRGQAALERLKVLDGIPPPYDKKKRMVVPAALKVVRLKPTRKFAYLGRLAHEVGWKYQAVTATLEEKR 160          
BLAST of CX301047 vs. ExPASy Swiss-Prot
Match: R13A2_ARATH (60S ribosomal protein L13a-2 OS=Arabidopsis thaliana GN=RPL13AB PE=1 SV=1)

HSP 1 Score: 204.912 bits (520), Expect = 3.390e-52
Identity = 93/156 (59.62%), Postives = 119/156 (76.28%), Query Frame = 1
Query:   49 KLVVIDCRNHILGRLASVVAKELLSGQKITCVRTEGICITGSFLRNRIKYHFFLDKKKNTNPTHGPFHFRSPSKIFWRTVRGMVPHKTARGTKALRLLKCFEGVPPPYDKTKRVVVPEALRPVRLGPTRKFTVLARLSAEVGWKHRSVVERLEAKR 516
            K VV+D R+H+ GRLAS++AKELL+GQ +  VR E IC++G  +R ++KY  FL K+ NT P+HGP HFR+PSKIFWRTVRGM+PHKT RG  AL  LK FEGVPPPYDK KR+V+P+AL+ +RL    K+ +L RLS+EVGW H   ++ LE KR
Sbjct:   10 KRVVVDARHHMCGRLASIIAKELLNGQSVVVVRCEEICLSGGLVRQKMKYMRFLRKRMNTKPSHGPIHFRAPSKIFWRTVRGMIPHKTKRGAAALARLKVFEGVPPPYDKVKRMVIPDALKVLRLQAGHKYCLLGRLSSEVGWNHYDTIKELEVKR 165          
BLAST of CX301047 vs. ExPASy Swiss-Prot
Match: RL13A_MOUSE (60S ribosomal protein L13a OS=Mus musculus GN=Rpl13a PE=1 SV=4)

HSP 1 Score: 204.527 bits (519), Expect = 4.427e-52
Identity = 95/156 (60.90%), Postives = 124/156 (79.49%), Query Frame = 1
Query:   49 KLVVIDCRNHILGRLASVVAKELLSGQKITCVRTEGICITGSFLRNRIKYHFFLDKKKNTNPTHGPFHFRSPSKIFWRTVRGMVPHKTARGTKALRLLKCFEGVPPPYDKTKRVVVPEALRPVRLGPTRKFTVLARLSAEVGWKHRSVVERLEAKR 516
            +++V+D R H+LGRLA++VAK++L G+K+  VR EGI I+G+F RN++KY  FL K+ NTNP+ GP+HFR+PS+IFWRTVRGM+PHKT RG  AL  LK  +G+PPPYDK KR+VVP AL+ VRL PTRKF  L RL+ EVGWK+++V   LE KR
Sbjct:    5 QVLVLDGRGHLLGRLAAIVAKQVLLGRKVVVVRCEGINISGNFYRNKLKYLAFLRKRMNTNPSRGPYHFRAPSRIFWRTVRGMLPHKTKRGQAALERLKVLDGIPPPYDKKKRMVVPAALKVVRLKPTRKFAYLGRLAHEVGWKYQAVTATLEEKR 160          
BLAST of CX301047 vs. ExPASy Swiss-Prot
Match: RL13A_PONAB (60S ribosomal protein L13a OS=Pongo abelii GN=RPL13A PE=2 SV=3)

HSP 1 Score: 204.142 bits (518), Expect = 5.782e-52
Identity = 95/156 (60.90%), Postives = 125/156 (80.13%), Query Frame = 1
Query:   49 KLVVIDCRNHILGRLASVVAKELLSGQKITCVRTEGICITGSFLRNRIKYHFFLDKKKNTNPTHGPFHFRSPSKIFWRTVRGMVPHKTARGTKALRLLKCFEGVPPPYDKTKRVVVPEALRPVRLGPTRKFTVLARLSAEVGWKHRSVVERLEAKR 516
            +++V+D R H+LGRLA++VAK++L G+K+  VR EGI I+G+F RN++KY  FL K+ NT+P+ GP+HFR+PS+IFWRTVRGM+PHKT RG  AL  LK F+G+PPPYDK KR+VVP AL+ VRL PTRKF  L RL+ EVGWK+++V   LE KR
Sbjct:    5 QVLVLDGRGHLLGRLAAIVAKQVLLGRKVVVVRCEGINISGNFYRNKLKYLAFLRKRMNTSPSRGPYHFRAPSRIFWRTVRGMLPHKTKRGQAALDRLKVFDGIPPPYDKKKRMVVPAALKVVRLKPTRKFAYLGRLAHEVGWKYQAVTATLEEKR 160          
BLAST of CX301047 vs. ExPASy Swiss-Prot
Match: R13A1_ARATH (60S ribosomal protein L13a-1 OS=Arabidopsis thaliana GN=RPL13AA PE=2 SV=1)

HSP 1 Score: 203.371 bits (516), Expect = 9.862e-52
Identity = 96/156 (61.54%), Postives = 119/156 (76.28%), Query Frame = 1
Query:   49 KLVVIDCRNHILGRLASVVAKELLSGQKITCVRTEGICITGSFLRNRIKYHFFLDKKKNTNPTHGPFHFRSPSKIFWRTVRGMVPHKTARGTKALRLLKCFEGVPPPYDKTKRVVVPEALRPVRLGPTRKFTVLARLSAEVGWKHRSVVERLEAKR 516
            K VV+D R+H+LGRLASVVAK+LL+GQ I  VR E IC++G  +R ++KY  FL K+ NT P+HGP HFR+PSKIFWRTVRGM+PHKT RG  AL  LK FEGVP PYDK KR+VVP+AL+ +RL    K+ +L RLS+EVGW H   ++ LE KR
Sbjct:   10 KRVVVDARHHMLGRLASVVAKDLLNGQNIVVVRCEEICLSGGLVRQKMKYMRFLRKRMNTKPSHGPIHFRAPSKIFWRTVRGMIPHKTKRGANALARLKVFEGVPTPYDKIKRMVVPDALKVLRLQAGHKYCLLGRLSSEVGWNHYDTIKELENKR 165          
The following BLAST results are available for this feature:
BLAST of CX301047 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 50
Match NameE-valueIdentityDescription
RL13A_CYAPA4.134e-5864.5660S ribosomal protein L13a OS=Cyanophora paradoxa ... [more]
RL13A_BOVIN8.920e-5361.5460S ribosomal protein L13a OS=Bos taurus GN=RPL13A... [more]
RL13A_MACFA1.522e-5261.5460S ribosomal protein L13a OS=Macaca fascicularis ... [more]
RL13A_HUMAN1.522e-5261.5460S ribosomal protein L13a OS=Homo sapiens GN=RPL1... [more]
RL16_NEUCR2.595e-5261.1160S ribosomal protein L16 OS=Neurospora crassa GN=... [more]
RL13A_RAT3.390e-5260.9060S ribosomal protein L13a OS=Rattus norvegicus GN... [more]
R13A2_ARATH3.390e-5259.6260S ribosomal protein L13a-2 OS=Arabidopsis thalia... [more]
RL13A_MOUSE4.427e-5260.9060S ribosomal protein L13a OS=Mus musculus GN=Rpl1... [more]
RL13A_PONAB5.782e-5260.9060S ribosomal protein L13a OS=Pongo abelii GN=RPL1... [more]
R13A1_ARATH9.862e-5261.5460S ribosomal protein L13a-1 OS=Arabidopsis thalia... [more]

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Properties
Property NameValue
Genbank descriptionC08005B06SK PhyRootSw1 Citrus sinensis cDNA clone C08005B06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX301047 ID=CX301047; Name=CX301047; organism=Citrus sinensis; type=EST; length=699bp
CTCGTGCCGAATTCGGCACGAGGAGAGTGCAAGATGACAGAGTTCAAGAA
GCTTGTGGTCATTGACTGCCGTAACCACATCCTTGGAAGGTTGGCATCCG
TTGTTGCCAAGGAGCTGCTGTCTGGACAGAAAATCACATGCGTCCGCACC
GAGGGAATCTGCATCACCGGCAGCTTCCTGCGTAACCGCATCAAGTACCA
CTTCTTCCTCGACAAGAAGAAGAACACCAACCCCACCCACGGTCCCTTCC
ACTTCCGCTCTCCATCTAAGATCTTCTGGCGCACAGTTCGTGGTATGGTT
CCTCACAAGACCGCTCGCGGAACCAAGGCTCTCCGTCTGCTGAAGTGCTT
CGAGGGTGTGCCCCCACCTTACGATAAGACCAAGCGCGTTGTTGTCCCCG
AGGCTCTCCGCCCCGTCCGTCTTGGACCCACTCGCAAGTTCACCGTTCTT
GCTCGTCTCAGCGCCGAGGTTGGCTGGAAGCACCGCTCCGTTGTCGAGCG
CCTCGAGGCCAAGCGTCTTGTCAAGGCCAAGGCTTTCTACCTCAAGAAGA
AGGCAAAGACGGCTTCCGTTCGCAAGGCCGTCCAGAAGTTCAAGACTGAG
AACCCTGCCATTCAGGAAGCTCTTCTTAAGTCCGGATTTGTTTCCAAGTA
GATACCAAAGTAAAATATACACCTCTCGCTTCAAAAAAAAAAAAAAAAA
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