CX301047
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CX301047 vs. ExPASy Swiss-Prot
Match: RL13A_CYAPA (60S ribosomal protein L13a OS=Cyanophora paradoxa PE=2 SV=1) HSP 1 Score: 224.557 bits (571), Expect = 4.134e-58 Identity = 102/158 (64.56%), Postives = 127/158 (80.38%), Query Frame = 1 Query: 43 FKKLVVIDCRNHILGRLASVVAKELLSGQKITCVRTEGICITGSFLRNRIKYHFFLDKKKNTNPTHGPFHFRSPSKIFWRTVRGMVPHKTARGTKALRLLKCFEGVPPPYDKTKRVVVPEALRPVRLGPTRKFTVLARLSAEVGWKHRSVVERLEAKR 516 F+K+VV+DCR H+LGRLA+ +AKELL+GQ++ VRTE I I+GS RN++K+H FL K+ NTNP GPFHFRSP++I WRT+RGM+PHKT RG AL LK FEGVPPPYDK KR+V+P+ALR +RL P RKF VL RL+ EVGW+H +V RLE KR Sbjct: 2 FEKVVVVDCRGHLLGRLAATLAKELLNGQRVVAVRTEEINISGSLFRNKLKFHAFLKKRMNTNPRRGPFHFRSPARILWRTIRGMIPHKTPRGAAALERLKAFEGVPPPYDKMKRMVIPQALRVLRLKPGRKFCVLGRLATEVGWRHSDLVTRLEEKR 159
BLAST of CX301047 vs. ExPASy Swiss-Prot
Match: RL13A_BOVIN (60S ribosomal protein L13a OS=Bos taurus GN=RPL13A PE=2 SV=3) HSP 1 Score: 206.838 bits (525), Expect = 8.920e-53 Identity = 96/156 (61.54%), Postives = 125/156 (80.13%), Query Frame = 1 Query: 49 KLVVIDCRNHILGRLASVVAKELLSGQKITCVRTEGICITGSFLRNRIKYHFFLDKKKNTNPTHGPFHFRSPSKIFWRTVRGMVPHKTARGTKALRLLKCFEGVPPPYDKTKRVVVPEALRPVRLGPTRKFTVLARLSAEVGWKHRSVVERLEAKR 516 +++V+D R H+LGRLA++VAK++L G+K+ VR EGI I+G+F RN++KY FL K+ NTNP+ GP+HFR+PS+IFWRTVRGM+PHKT RG AL LK F+G+PPPYDK KR+VVP AL+ VRL PTRKF L RL+ EVGWK+++V LE KR Sbjct: 5 QVLVLDGRGHLLGRLAAIVAKQVLLGRKVVVVRCEGINISGNFYRNKLKYLAFLRKRMNTNPSRGPYHFRAPSRIFWRTVRGMLPHKTKRGQAALERLKVFDGIPPPYDKKKRMVVPAALKVVRLKPTRKFAYLGRLAHEVGWKYQAVTATLEEKR 160
BLAST of CX301047 vs. ExPASy Swiss-Prot
Match: RL13A_MACFA (60S ribosomal protein L13a OS=Macaca fascicularis GN=RPL13A PE=2 SV=3) HSP 1 Score: 206.068 bits (523), Expect = 1.522e-52 Identity = 96/156 (61.54%), Postives = 125/156 (80.13%), Query Frame = 1 Query: 49 KLVVIDCRNHILGRLASVVAKELLSGQKITCVRTEGICITGSFLRNRIKYHFFLDKKKNTNPTHGPFHFRSPSKIFWRTVRGMVPHKTARGTKALRLLKCFEGVPPPYDKTKRVVVPEALRPVRLGPTRKFTVLARLSAEVGWKHRSVVERLEAKR 516 +++V+D R H+LGRLA++VAK++L G+K+ VR EGI I+G+F RN++KY FL K+ NTNP+ GP+HFR+PS+IFWRTVRGM+PHKT RG AL LK F+G+PPPYDK KR+VVP AL+ VRL PTRKF L RL+ EVGWK+++V LE KR Sbjct: 5 QVLVLDGRGHLLGRLAAIVAKQVLLGRKVVVVRCEGINISGNFYRNKLKYLAFLRKRMNTNPSRGPYHFRAPSRIFWRTVRGMLPHKTKRGQAALDRLKVFDGIPPPYDKKKRMVVPAALKVVRLKPTRKFAYLGRLAHEVGWKYQAVTTTLEEKR 160
BLAST of CX301047 vs. ExPASy Swiss-Prot
Match: RL13A_HUMAN (60S ribosomal protein L13a OS=Homo sapiens GN=RPL13A PE=1 SV=2) HSP 1 Score: 206.068 bits (523), Expect = 1.522e-52 Identity = 96/156 (61.54%), Postives = 125/156 (80.13%), Query Frame = 1 Query: 49 KLVVIDCRNHILGRLASVVAKELLSGQKITCVRTEGICITGSFLRNRIKYHFFLDKKKNTNPTHGPFHFRSPSKIFWRTVRGMVPHKTARGTKALRLLKCFEGVPPPYDKTKRVVVPEALRPVRLGPTRKFTVLARLSAEVGWKHRSVVERLEAKR 516 +++V+D R H+LGRLA++VAK++L G+K+ VR EGI I+G+F RN++KY FL K+ NTNP+ GP+HFR+PS+IFWRTVRGM+PHKT RG AL LK F+G+PPPYDK KR+VVP AL+ VRL PTRKF L RL+ EVGWK+++V LE KR Sbjct: 5 QVLVLDGRGHLLGRLAAIVAKQVLLGRKVVVVRCEGINISGNFYRNKLKYLAFLRKRMNTNPSRGPYHFRAPSRIFWRTVRGMLPHKTKRGQAALDRLKVFDGIPPPYDKKKRMVVPAALKVVRLKPTRKFAYLGRLAHEVGWKYQAVTATLEEKR 160
BLAST of CX301047 vs. ExPASy Swiss-Prot
Match: RL16_NEUCR (60S ribosomal protein L16 OS=Neurospora crassa GN=rpl-16 PE=3 SV=1) HSP 1 Score: 205.297 bits (521), Expect = 2.595e-52 Identity = 99/162 (61.11%), Postives = 125/162 (77.16%), Query Frame = 1 Query: 34 MTEFKKLVVIDCRNHILGRLASVVAKELLSGQKITCVRTEGICITGSFLRNRIKYHFFLDKKKNTNPTHG-PFHFRSPSKIFWRTVRGMVPHKTARGTKALRLLKCFEGVPPPYDKTKRVVVPEALRPVRLGPTRKFTVLARLSAEVGWKHRSVVERLEAKR 516 M+ F+ +VVID + H+LGRLAS+VAK+LL+GQKI VR E + I+G F R ++KYH +L K NPT G PFHFR+PS+IF++ VRGM+PHKTARG AL LK FEGVPPPYDK K++VVP+ALR +RL P RKF + RLS+EVGWK+ VV RLE +R Sbjct: 1 MSSFESVVVIDGKGHLLGRLASIVAKQLLNGQKIVVVRCEALNISGEFFRAKLKYHSYLRKMTRYNPTRGGPFHFRAPSRIFYKAVRGMIPHKTARGAAALERLKVFEGVPPPYDKKKKMVVPQALRVLRLQPGRKFCTVGRLSSEVGWKYEDVVSRLEERR 162
BLAST of CX301047 vs. ExPASy Swiss-Prot
Match: RL13A_RAT (60S ribosomal protein L13a OS=Rattus norvegicus GN=Rpl13a PE=1 SV=2) HSP 1 Score: 204.912 bits (520), Expect = 3.390e-52 Identity = 95/156 (60.90%), Postives = 125/156 (80.13%), Query Frame = 1 Query: 49 KLVVIDCRNHILGRLASVVAKELLSGQKITCVRTEGICITGSFLRNRIKYHFFLDKKKNTNPTHGPFHFRSPSKIFWRTVRGMVPHKTARGTKALRLLKCFEGVPPPYDKTKRVVVPEALRPVRLGPTRKFTVLARLSAEVGWKHRSVVERLEAKR 516 +++V+D R+H+LGRLA++VAK++L G+K+ VR EGI I+G+F RN++KY FL K+ NTNP+ GP+HFR+PS+IFWRTVRGM+PHKT RG AL LK +G+PPPYDK KR+VVP AL+ VRL PTRKF L RL+ EVGWK+++V LE KR Sbjct: 5 QVLVLDGRSHLLGRLAAIVAKQVLLGRKVVVVRCEGINISGNFYRNKLKYLAFLRKRMNTNPSRGPYHFRAPSRIFWRTVRGMLPHKTKRGQAALERLKVLDGIPPPYDKKKRMVVPAALKVVRLKPTRKFAYLGRLAHEVGWKYQAVTATLEEKR 160
BLAST of CX301047 vs. ExPASy Swiss-Prot
Match: R13A2_ARATH (60S ribosomal protein L13a-2 OS=Arabidopsis thaliana GN=RPL13AB PE=1 SV=1) HSP 1 Score: 204.912 bits (520), Expect = 3.390e-52 Identity = 93/156 (59.62%), Postives = 119/156 (76.28%), Query Frame = 1 Query: 49 KLVVIDCRNHILGRLASVVAKELLSGQKITCVRTEGICITGSFLRNRIKYHFFLDKKKNTNPTHGPFHFRSPSKIFWRTVRGMVPHKTARGTKALRLLKCFEGVPPPYDKTKRVVVPEALRPVRLGPTRKFTVLARLSAEVGWKHRSVVERLEAKR 516 K VV+D R+H+ GRLAS++AKELL+GQ + VR E IC++G +R ++KY FL K+ NT P+HGP HFR+PSKIFWRTVRGM+PHKT RG AL LK FEGVPPPYDK KR+V+P+AL+ +RL K+ +L RLS+EVGW H ++ LE KR Sbjct: 10 KRVVVDARHHMCGRLASIIAKELLNGQSVVVVRCEEICLSGGLVRQKMKYMRFLRKRMNTKPSHGPIHFRAPSKIFWRTVRGMIPHKTKRGAAALARLKVFEGVPPPYDKVKRMVIPDALKVLRLQAGHKYCLLGRLSSEVGWNHYDTIKELEVKR 165
BLAST of CX301047 vs. ExPASy Swiss-Prot
Match: RL13A_MOUSE (60S ribosomal protein L13a OS=Mus musculus GN=Rpl13a PE=1 SV=4) HSP 1 Score: 204.527 bits (519), Expect = 4.427e-52 Identity = 95/156 (60.90%), Postives = 124/156 (79.49%), Query Frame = 1 Query: 49 KLVVIDCRNHILGRLASVVAKELLSGQKITCVRTEGICITGSFLRNRIKYHFFLDKKKNTNPTHGPFHFRSPSKIFWRTVRGMVPHKTARGTKALRLLKCFEGVPPPYDKTKRVVVPEALRPVRLGPTRKFTVLARLSAEVGWKHRSVVERLEAKR 516 +++V+D R H+LGRLA++VAK++L G+K+ VR EGI I+G+F RN++KY FL K+ NTNP+ GP+HFR+PS+IFWRTVRGM+PHKT RG AL LK +G+PPPYDK KR+VVP AL+ VRL PTRKF L RL+ EVGWK+++V LE KR Sbjct: 5 QVLVLDGRGHLLGRLAAIVAKQVLLGRKVVVVRCEGINISGNFYRNKLKYLAFLRKRMNTNPSRGPYHFRAPSRIFWRTVRGMLPHKTKRGQAALERLKVLDGIPPPYDKKKRMVVPAALKVVRLKPTRKFAYLGRLAHEVGWKYQAVTATLEEKR 160
BLAST of CX301047 vs. ExPASy Swiss-Prot
Match: RL13A_PONAB (60S ribosomal protein L13a OS=Pongo abelii GN=RPL13A PE=2 SV=3) HSP 1 Score: 204.142 bits (518), Expect = 5.782e-52 Identity = 95/156 (60.90%), Postives = 125/156 (80.13%), Query Frame = 1 Query: 49 KLVVIDCRNHILGRLASVVAKELLSGQKITCVRTEGICITGSFLRNRIKYHFFLDKKKNTNPTHGPFHFRSPSKIFWRTVRGMVPHKTARGTKALRLLKCFEGVPPPYDKTKRVVVPEALRPVRLGPTRKFTVLARLSAEVGWKHRSVVERLEAKR 516 +++V+D R H+LGRLA++VAK++L G+K+ VR EGI I+G+F RN++KY FL K+ NT+P+ GP+HFR+PS+IFWRTVRGM+PHKT RG AL LK F+G+PPPYDK KR+VVP AL+ VRL PTRKF L RL+ EVGWK+++V LE KR Sbjct: 5 QVLVLDGRGHLLGRLAAIVAKQVLLGRKVVVVRCEGINISGNFYRNKLKYLAFLRKRMNTSPSRGPYHFRAPSRIFWRTVRGMLPHKTKRGQAALDRLKVFDGIPPPYDKKKRMVVPAALKVVRLKPTRKFAYLGRLAHEVGWKYQAVTATLEEKR 160
BLAST of CX301047 vs. ExPASy Swiss-Prot
Match: R13A1_ARATH (60S ribosomal protein L13a-1 OS=Arabidopsis thaliana GN=RPL13AA PE=2 SV=1) HSP 1 Score: 203.371 bits (516), Expect = 9.862e-52 Identity = 96/156 (61.54%), Postives = 119/156 (76.28%), Query Frame = 1 Query: 49 KLVVIDCRNHILGRLASVVAKELLSGQKITCVRTEGICITGSFLRNRIKYHFFLDKKKNTNPTHGPFHFRSPSKIFWRTVRGMVPHKTARGTKALRLLKCFEGVPPPYDKTKRVVVPEALRPVRLGPTRKFTVLARLSAEVGWKHRSVVERLEAKR 516 K VV+D R+H+LGRLASVVAK+LL+GQ I VR E IC++G +R ++KY FL K+ NT P+HGP HFR+PSKIFWRTVRGM+PHKT RG AL LK FEGVP PYDK KR+VVP+AL+ +RL K+ +L RLS+EVGW H ++ LE KR Sbjct: 10 KRVVVDARHHMLGRLASVVAKDLLNGQNIVVVRCEEICLSGGLVRQKMKYMRFLRKRMNTKPSHGPIHFRAPSKIFWRTVRGMIPHKTKRGANALARLKVFEGVPTPYDKIKRMVVPDALKVLRLQAGHKYCLLGRLSSEVGWNHYDTIKELENKR 165 The following BLAST results are available for this feature:
BLAST of CX301047 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 50
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Sequences
The
following sequences are available for this feature:
EST sequence >CX301047 ID=CX301047; Name=CX301047; organism=Citrus sinensis; type=EST; length=699bpback to top |