CX301046

Overview
NameCX301046
Unique NameCX301046
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length736
Libraries
Library NameType
PhyRootSw1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX301046 vs. ExPASy Swiss-Prot
Match: KATAM_ARATH (Xyloglucan galactosyltransferase KATAMARI1 OS=Arabidopsis thaliana GN=KAM1 PE=1 SV=1)

HSP 1 Score: 228.794 bits (582), Expect = 2.383e-59
Identity = 106/142 (74.65%), Postives = 123/142 (86.62%), Query Frame = 1
Query:    1 FHPGSAYTQYTWHLPKNYSSYSVFIPEDDIRKRNVSIEERLKQISPEQIKEMRETVINLIPRVIYADPRSKLATLKDSFDVAVQSIIDRVTRLRRLTIEGLPEYDNFVEQNGWKYALLDEGQRSVGPHEWDPFFSKPKKVDD 426
            FHPGSAYTQYTWHLPKNY++YSVFIPEDD+RKRN+SIEERL QI  +Q+K MRE VINLIPR+IYADPRS+L T KD+FDV+VQ++ID+VTRLR+  IEG  EYD FVE+N WKYALL+EGQR  G H WDPFFSKPK  +D
Sbjct:  449 FHPGSAYTQYTWHLPKNYTTYSVFIPEDDVRKRNISIEERLLQIPAKQVKIMRENVINLIPRLIYADPRSELETQKDAFDVSVQAVIDKVTRLRKNMIEGRTEYDYFVEENSWKYALLEEGQREAGGHVWDPFFSKPKPGED 590          
BLAST of CX301046 vs. ExPASy Swiss-Prot
Match: KATAM_ORYSJ (Xyloglucan galactosyltransferase KATAMARI1 homolog OS=Oryza sativa subsp. japonica GN=Os03g0144800 PE=2 SV=1)

HSP 1 Score: 215.312 bits (547), Expect = 6.986e-56
Identity = 101/138 (73.19%), Postives = 120/138 (86.96%), Query Frame = 1
Query:    1 FHPGSAYTQYTWHLPKNYSSYSVFIPEDDIRKRNVSIEERLKQISPEQIKEMRETVINLIPRVIYADPRSKLATLKDSFDVAVQSIIDRVTRLRRLTIEGLPEYDNFVEQNGWKYALLDEGQRSVGPHEWDPFFSKPK 414
            FHPGSAY QYTWHLPKNY+ YSVFIPED +RK NVSIE+RLK I P+ +K+MRE VI+LIPRVIYADPRSKL TLKD+FDV+V++II++VT+LRR  IE   + D FVE+N WKY LL+EGQR++GPHEWDPFFSKPK
Sbjct:  426 FHPGSAYVQYTWHLPKNYTRYSVFIPEDGVRKGNVSIEDRLKSIHPDMVKKMREEVISLIPRVIYADPRSKLETLKDAFDVSVEAIINKVTQLRRDIIEDHEDKD-FVEENSWKYDLLEEGQRTIGPHEWDPFFSKPK 562          

HSP 2 Score: 23.483 bits (49), Expect = 6.986e-56
Identity = 9/10 (90.00%), Postives = 9/10 (90.00%), Query Frame = 2
Query:  434 AKNSWKNELR 463
            AKNSWKNE R
Sbjct:  576 AKNSWKNEQR 585          
The following BLAST results are available for this feature:
BLAST of CX301046 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
KATAM_ARATH2.383e-5974.65Xyloglucan galactosyltransferase KATAMARI1 OS=Arab... [more]
KATAM_ORYSJ6.986e-5673.19Xyloglucan galactosyltransferase KATAMARI1 homolog... [more]
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Properties
Property NameValue
Genbank descriptionC08005B05SK PhyRootSw1 Citrus sinensis cDNA clone C08005B05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX301046 ID=CX301046; Name=CX301046; organism=Citrus sinensis; type=EST; length=736bp
TTTCATCCTGGGTCAGCTTACACACAATATACTTGGCATCTCCCAAAGAA
TTATTCTTCATACTCTGTTTTCATTCCAGAGGATGACATCCGTAAGAGGA
ATGTAAGCATAGAGGAAAGACTGAAACAAATTTCTCCCGAGCAGATTAAG
GAGATGAGGGAGACTGTTATCAATCTCATTCCAAGGGTGATATATGCAGA
TCCTCGCTCAAAATTGGCGACTCTCAAGGATTCTTTTGATGTTGCTGTAC
AGTCGATCATTGACAGAGTAACAAGGTTGAGGAGGCTCACCATTGAAGGT
CTTCCAGAATATGATAATTTTGTGGAGCAGAATGGCTGGAAATATGCTTT
GTTAGATGAAGGACAGCGTTCAGTAGGACCTCATGAGTGGGATCCTTTCT
TCTCAAAACCAAAGAAAGTAGATGATCGCGGTCGCAAAAAATTCATGGAA
GAATGAGCTAAGAGCTTGCTCATTCATGAGAGAAGAAGTTGAGGAAGTAG
CTATTGAAGTTGAACTGATGCGCAAAGTAAGTGCAGACAGGCATGTTACC
TACGGGATTGATCATTGTAGAAACTGCCATAAAGTTTCCTGGGGATAATA
GACACTTTTTTTGGTGCTTCTAATACAGTTGTTTTTTCACATTTTGCATT
TTGAATCTGCTAAGCAAATTCTTTGTAATGAACTGTAGTTGAGAATTCAA
TTTTTTTTTCCATATTATAATATAATATCCAATCAG
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