CX301045

Overview
NameCX301045
Unique NameCX301045
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length689
Libraries
Library NameType
PhyRootSw1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX301045 vs. ExPASy Swiss-Prot
Match: HYPK_HUMAN (Huntingtin-interacting protein K OS=Homo sapiens GN=HYPK PE=1 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 4.787e-11
Identity = 40/125 (32.00%), Postives = 74/125 (59.20%), Query Frame = 2
Query:   65 LLRKIKKMDGADGGEVDRIVDS----------KDLQQQSKA--LDKLTDRVEDRQLDSTRVQEAMASIAASKAGDLNAMRMREKELAAVKINAADVDIIANELELDKKVAERTLREHKGDAVAAI 403
            L+R+  ++D A  G+V+  +++          K  +  S A  L+++TD  E++++ S+ ++ AM+ I   ++ +  A + REKELA V I   D+++I  E+E+ +  AER+LREH G+ V A+
Sbjct:   46 LMRRRGEIDMATEGDVELELETETSGPERPPEKPRKHDSGAADLERVTDYAEEKEIQSSNLETAMSVIGDRRSREQKAKQEREKELAKVTIKKEDLELIMTEMEISRAAAERSLREHMGNVVEAL 170          
BLAST of CX301045 vs. ExPASy Swiss-Prot
Match: HYPK_MOUSE (Huntingtin-interacting protein K OS=Mus musculus GN=Hypk PE=2 SV=2)

HSP 1 Score: 67.3958 bits (163), Expect = 8.165e-11
Identity = 31/82 (37.80%), Postives = 55/82 (67.07%), Query Frame = 2
Query:  158 LDKLTDRVEDRQLDSTRVQEAMASIAASKAGDLNAMRMREKELAAVKINAADVDIIANELELDKKVAERTLREHKGDAVAAI 403
            L+++TD  E++++ S+ ++ AM+ I   ++ +  A + REKELA V I   D+++I  E+E+ +  AER+LREH G+ V A+
Sbjct:   43 LERVTDYAEEKEIQSSNLETAMSVIGDRRSREQKAKQEREKELAKVTIKKEDLELIMTEMEISRAAAERSLREHMGNVVEAL 124          
BLAST of CX301045 vs. ExPASy Swiss-Prot
Match: HYPK_MACFA (Huntingtin-interacting protein K OS=Macaca fascicularis GN=HYPK PE=2 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 8.165e-11
Identity = 31/82 (37.80%), Postives = 55/82 (67.07%), Query Frame = 2
Query:  158 LDKLTDRVEDRQLDSTRVQEAMASIAASKAGDLNAMRMREKELAAVKINAADVDIIANELELDKKVAERTLREHKGDAVAAI 403
            L+++TD  E++++ S+ ++ AM+ I   ++ +  A + REKELA V I   D+++I  E+E+ +  AER+LREH G+ V A+
Sbjct:   43 LERVTDYAEEKEIQSSNLETAMSVIGDRRSREQKAKQEREKELAKVTIKKEDLELIMTEMEISRAAAERSLREHMGNVVEAL 124          
The following BLAST results are available for this feature:
BLAST of CX301045 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 3
Match NameE-valueIdentityDescription
HYPK_HUMAN4.787e-1132.00Huntingtin-interacting protein K OS=Homo sapiens G... [more]
HYPK_MOUSE8.165e-1137.80Huntingtin-interacting protein K OS=Mus musculus G... [more]
HYPK_MACFA8.165e-1137.80Huntingtin-interacting protein K OS=Macaca fascicu... [more]
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Properties
Property NameValue
Genbank descriptionC08005B04SK PhyRootSw1 Citrus sinensis cDNA clone C08005B04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX301045 ID=CX301045; Name=CX301045; organism=Citrus sinensis; type=EST; length=689bp
ACCCTTTGGAGTCCGCAACAAAAACAAAAGTTAGGGTTTTCATCAGGACG
AGAATCCGATTTTATTATTAAGAAAGATCAAAAAAATGGACGGAGCAGAT
GGAGGGGAAGTGGATAGAATTGTGGATTCAAAGGACCTACAGCAACAGAG
TAAAGCTCTCGACAAGCTTACTGACCGTGTCGAGGATCGTCAGCTCGATT
CCACTCGTGTGCAAGAGGCTATGGCCTCCATTGCTGCATCAAAAGCAGGT
GACTTGAATGCTATGAGAATGAGGGAGAAAGAATTAGCTGCTGTTAAGAT
CAATGCAGCTGATGTCGACATAATTGCAAATGAACTAGAGTTGGACAAGA
AGGTGGCTGAGAGAACCCTACGCGAGCACAAGGGTGATGCCGTTGCTGCC
ATACGACACTTGCTTCGCTAGAGAACCACCAGGCTAGAGTTGGAATTTTC
TAAAAATTTTCTGAGAATCACATTTATTTCTGAAAAATCAACCCAAATAC
ATACAGCTAAGCCTTTTATTCCTCCTCGCTGTCTGTATAATCTAGCCCAA
ACCATTTGCCTTAGAATTGAAGCATGTTCTCAAGGTTGTTTGCTCTAATG
CCCATTGCTTTTGTCATGCCAAATGCTGGTATCATTCGGGGATAGCAATC
GATGATTGATGATTGATAATTGATGGTCAACGATTGATG
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