CX301044

Overview
NameCX301044
Unique NameCX301044
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length697
Libraries
Library NameType
PhyRootSw1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CX301044_ssr640 microsatellite CX301044_ssr640:640..651. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig9509 contig Csv1_Contig9509:11..707. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX301044 vs. ExPASy Swiss-Prot
Match: 21KD_DAUCA (21 kDa protein OS=Daucus carota PE=2 SV=1)

HSP 1 Score: 151.369 bits (381), Expect = 4.373e-36
Identity = 74/167 (44.31%), Postives = 115/167 (68.86%), Query Frame = 3
Query:  141 STEFIKTSCSSTTYPTLCYKSLARHASLIQTSPKLLAHASLNVTLAKAKSTSAVMLKMSKSPGMKPREADAMQDCLEELSDSVDELRKSIGEMGLI---KASNFELTMNDIQTWVSAALTDDTTCSDGFEKNTVNGKV---VRGQIVKIAHMTSNALALINSYASLH 623
            + +FIKTSC+ TTYP +C +SL+ +A  IQ +P+ LA  +L V+L + +     M +++K  G+K R+  A+ DCLEE+ DS+D + +S  EM  +   K ++F   M++++TWVSAALTD+TTC DGF    ++GK+   VR Q+V +A +TSNALAL+N++A+ H
Sbjct:   25 ANQFIKTSCTLTTYPAVCEQSLSAYAKTIQNNPQELASTALQVSLTRTQQAQTFMKRLNKFKGLKARQYAAIHDCLEEVEDSLDRVSRSCDEMKNLSHAKGNDFTFRMSNVETWVSAALTDETTCMDGFAGKGMDGKIKESVRAQVVAVARVTSNALALVNNFAAKH 191          
BLAST of CX301044 vs. ExPASy Swiss-Prot
Match: PME2_ARATH (Pectinesterase 2 OS=Arabidopsis thaliana GN=PME2 PE=2 SV=2)

HSP 1 Score: 100.523 bits (249), Expect = 8.853e-21
Identity = 68/211 (32.23%), Postives = 114/211 (54.03%), Query Frame = 3
Query:    6 YSEFRKRAREKMESSSSKXXXXXXXXXXXXNSSSASRNVPSKITA----STEFIKTSCSSTTYPTLCYKSLARHASLIQTSPKLLAHASLNVTLAKAK-STSAVMLKMSKSPGMKPREADAMQDCLEELSDSVDELRKSIGEMGLI-KASNFELTMNDIQTWVSAALTDDTTCSDGFEKNTVNGKV----VRGQIVKIAHMTSNALALINS 608
            +S+F+    +K+  SS+              +++ ++N   KIT     S   +K+ CSST YP LC+ ++A       TS K +  ASLN+T    K +  AV   ++K  G+ PRE  A+ DCLE + +++DEL  ++ ++    K  +     +D++T +S+A+T+  TC DGF  +  + KV    ++GQ V + HM SNALA+I +
Sbjct:   11 FSDFKNN--KKLILSSAAIALLLLASIVGIAATTTNQNKNQKITTLSSTSHAILKSVCSSTLYPELCFSAVAATGGKELTSQKEVIEASLNLTTKAVKHNYFAVKKLIAKRKGLTPREVTALHDCLETIDETLDELHVAVEDLHQYPKQKSLRKHADDLKTLISSAITNQGTCLDGFSYDDADRKVRKALLKGQ-VHVEHMCSNALAMIKN 218          
BLAST of CX301044 vs. ExPASy Swiss-Prot
Match: PME3_ARATH (Pectinesterase/pectinesterase inhibitor 3 OS=Arabidopsis thaliana GN=PME3 PE=2 SV=2)

HSP 1 Score: 94.3597 bits (233), Expect = 6.345e-19
Identity = 54/163 (33.13%), Postives = 93/163 (57.06%), Query Frame = 3
Query:  138 ASTEFIKTSCSSTTYPTLCYKSLARHASLIQTSPKLLAHASLNVTLAKAKSTSAVMLKM-SKSPGMKPREADAMQDCLEELSDSVDELRKSIGEMGLIKA-SNFELTMNDIQTWVSAALTDDTTCSDGFEKNTVNGKV----VRGQIVKIAHMTSNALALINS 608
            +S   +++SCSST YP LC  ++     +  TS K +  AS+N+T+   +     + K+  K  G+ PRE  A+ DCLE + +++DEL +++ ++ L            D++T +S+A+T+  TC DGF  +  + +V    ++GQI  + HM SNALA+I +
Sbjct:   54 SSHAVLRSSCSSTRYPELCISAVVTAGGVELTSQKDVIEASVNLTITAVEHNYFTVKKLIKKRKGLTPREKTALHDCLETIDETLDELHETVEDLHLYPTKKTLREHAGDLKTLISSAITNQETCLDGFSHDDADKQVRKALLKGQI-HVEHMCSNALAMIKN 215          
BLAST of CX301044 vs. ExPASy Swiss-Prot
Match: PME3_CITSI (Pectinesterase 3 OS=Citrus sinensis PE=1 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 5.938e-17
Identity = 56/159 (35.22%), Postives = 88/159 (55.35%), Query Frame = 3
Query:  153 IKTSCSSTTYPTLCYKSLAR--HASLIQTSPKLLAHASLNVTLAKAKSTSAVMLKMSKSPGMKPREADAMQDCLEELSDSVDELRKSIGEM-GLIKASNFELTMNDIQTWVSAALTDDTTCSDGFEKNTVNGKVVRGQI----VKIAHMTSNALALINS 608
            +K+SCSST YP LC+ ++A    AS   TS K +   SLN+T    +     + K+ K   +  RE  A+ DCLE + +++DEL K++ ++       +     +D++T +SAA+T+  TC DGF  +  N K VR  +    V +  M SNALA+I +
Sbjct:   69 LKSSCSSTRYPDLCFSAIAAVPEASKKVTSQKDVIEMSLNITTTAVEHNYFGIQKLLKRTNLTKREKVALHDCLETIDETLDELHKAVEDLEEYPNKKSLSQHADDLKTLMSAAMTNQGTCLDGFSHDDAN-KHVRDALSDGQVHVEKMCSNALAMIKN 226          
BLAST of CX301044 vs. ExPASy Swiss-Prot
Match: PME1_CITSI (Pectinesterase 1 OS=Citrus sinensis GN=PECS-1.1 PE=2 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 5.938e-17
Identity = 56/159 (35.22%), Postives = 88/159 (55.35%), Query Frame = 3
Query:  153 IKTSCSSTTYPTLCYKSLAR--HASLIQTSPKLLAHASLNVTLAKAKSTSAVMLKMSKSPGMKPREADAMQDCLEELSDSVDELRKSIGEM-GLIKASNFELTMNDIQTWVSAALTDDTTCSDGFEKNTVNGKVVRGQI----VKIAHMTSNALALINS 608
            +K+SCSST YP LC+ ++A    AS   TS K +   SLN+T    +     + K+ K   +  RE  A+ DCLE + +++DEL K++ ++       +     +D++T +SAA+T+  TC DGF  +  N K VR  +    V +  M SNALA+I +
Sbjct:   69 LKSSCSSTRYPDLCFSAIAAVPEASKKVTSQKDVIEMSLNITTTAVEHNYFGIQKLLKRTNLTKREKVALHDCLETIDETLDELHKAVEDLEEYPNKKSLSQHADDLKTLMSAAMTNQGTCLDGFSHDDAN-KHVRDALSDGQVHVEKMCSNALAMIKN 226          
BLAST of CX301044 vs. ExPASy Swiss-Prot
Match: PMEU1_SOLLC (Pectinesterase/pectinesterase inhibitor U1 OS=Solanum lycopersicum GN=PMEU1 PE=2 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 5.027e-16
Identity = 50/158 (31.65%), Postives = 92/158 (58.23%), Query Frame = 3
Query:  153 IKTSCSSTTYPTLCYKSLARHASLIQ--TSPKLLAHASLNVTLAKAKSTSAVMLKMSKS-PGMKPREADAMQDCLEELSDSVDELRKSIGEMGLI-KASNFELTMNDIQTWVSAALTDDTTCSDGFEKNTVNGKV----VRGQIVKIAHMTSNALALI 602
            +K++CS+T +P LCY ++   +   +  TS K +   SLN+T+   +     + ++ K+  G+ PRE  A+ DCLE + +++DEL  ++ ++ L     + +  + D++T +S+A+T+  TC DGF  +  + KV    ++GQ   +  M SNALA+I
Sbjct:   66 VKSACSNTLHPELCYSAIVNVSDFSKKVTSQKDVIELSLNITVKAVRRNYYAVKELIKTRKGLTPREKVALHDCLETMDETLDELHTAVEDLELYPNKKSLKEHVEDLKTLISSAITNQETCLDGFSHDEADKKVRKVLLKGQ-KHVEKMCSNALAMI 222          
BLAST of CX301044 vs. ExPASy Swiss-Prot
Match: PME61_ARATH (Probable pectinesterase/pectinesterase inhibitor 61 OS=Arabidopsis thaliana GN=PME61 PE=1 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 6.566e-16
Identity = 52/171 (30.41%), Postives = 84/171 (49.12%), Query Frame = 3
Query:  108 ASRNVPSKITASTEFIKTSCSSTTYPTLCYKSLARHASLIQTSPKLLAHASLNVTL---AKAKSTSAVMLKMSKSPGMKPREADAMQDCLEELSDSVDELRKSIGEMGLIKASNFELTMNDIQTWVSAALTDDTTCSDGFEKNTVNGKVVRGQIV----KIAHMTSNALAL 599
            + +  P      T+ I  +CS + YP LC  +L      +      L H S N TL   +KA  TS+ +        M PR   A   CLE L DSVD L +++  + ++       + +D+ TW+S+A+T+  TC+DGF++    G  V+ Q++     ++ M SN LA+
Sbjct:   60 SGKTEPKLTRKPTQAISRTCSKSLYPNLCIDTLLDFPGSLTADENELIHISFNATLQKFSKALYTSSTITYTQ----MPPRVRSAYDSCLELLDDSVDALTRALSSVVVVSGDE---SHSDVMTWLSSAMTNHDTCTDGFDEIEGQGGEVKDQVIGAVKDLSEMVSNCLAI 223          
BLAST of CX301044 vs. ExPASy Swiss-Prot
Match: PME3_PHAVU (Pectinesterase 3 OS=Phaseolus vulgaris GN=MPE3 PE=2 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 5.202e-13
Identity = 52/188 (27.66%), Postives = 86/188 (45.74%), Query Frame = 3
Query:   99 SSSASRNVPSKITASTEFIKTSCSSTTYPTLCYKSLARHASLIQTSPKLLAHASLNVTLAKAKSTSAVMLKMSKSPGMKPREADAMQDCLEELSDSVDELRKSIGEMGLIKAS-NFELTMNDIQTWVSAALTDDTTCSDGFEKNTVNGKVVRGQIVKI-------AHMTSNALALINSYASLHA*LET 638
            SS +S +VP    +    +K  C +T YP+ C+ S++       T P+LL   SL V + +  S  +   K+  +     R   A+  C     D++D L  SI  +G +        ++++++TW+SAALTD  TC D      +N    RG + +I           SN+LA++     L +  ET
Sbjct:   59 SSPSSDSVPQTELSPAASLKAVCDTTRYPSSCFSSISSLPESNTTDPELLFKLSLRVAIDELSSFPS---KLRANAEQDARLQKAIDVCSSVFGDALDRLNDSISALGTVAGRIASSASVSNVETWLSAALTDQDTCLDAV--GELNSTAARGALQEIETAMRNSTEFASNSLAIVTKILGLLSRFET 241          
BLAST of CX301044 vs. ExPASy Swiss-Prot
Match: PME34_ARATH (Probable pectinesterase/pectinesterase inhibitor 34 OS=Arabidopsis thaliana GN=PME34 PE=2 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 4.404e-12
Identity = 52/172 (30.23%), Postives = 86/172 (50.00%), Query Frame = 3
Query:  111 SRNVPSKITASTEFIKTSCSSTTYPTLCYKSLARH-ASLIQTSPKLLAHASLNVTL---AKAKSTSAVMLKMSKSPGMKPREADAMQDCLEELSDSVDELRKSIGEMGLIKASNFELTMNDIQTWVSAALTDDTTCSDGFEKNTVNG--KVVRGQIVKIAHMTSNALALINS 608
            +++VP      ++ I  +C  T +P LC  SL     SL  +S K L H ++N+TL   + A  +SA +  +     M PR   A   C+E L DSVD L +++  +    A        D+ TW+SAALT+  TC++GF+     G    +   +  ++ + SN LA+ ++
Sbjct:   73 NQSVPGLARKPSQAISKACELTRFPELCVDSLMDFPGSLAASSSKDLIHVTVNMTLHHFSHALYSSASLSFVD----MPPRARSAYDSCVELLDDSVDALSRALSSVVSSSAKP-----QDVTTWLSAALTNHDTCTEGFDGVDDGGVKDHMTAALQNLSELVSNCLAIFSA 235          
BLAST of CX301044 vs. ExPASy Swiss-Prot
Match: PME28_ARATH (Putative pectinesterase/pectinesterase inhibitor 28 OS=Arabidopsis thaliana GN=PME28 PE=2 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 4.869e-11
Identity = 43/167 (25.75%), Postives = 79/167 (47.31%), Query Frame = 3
Query:  129 KITASTEFIKTSCSSTTYPTLCYKSLARHASLIQTSPKLLAHASLNVTLAKAKST---SAVMLKMSKSPGMKPREADAMQDCLEELSDSVDELRKSIGEMGLIKASNFELTMNDIQTWVSAALTDDTTCSDGFEKNTVN-GKVVRGQIVKIAHMTSNALALINSYAS 617
            +IT S + IK  C+ T Y   C  +L + A    + P  L   + N T+ +       S  M+++ K P  K     A+  C E +  ++ EL KS  E+G  +    +  +  ++ W+SA ++ + TC DGF+    N G+ ++  +     +T N LA++   ++
Sbjct:   49 EITTSVKAIKDVCAPTDYKETCEDTLRKDAK-DTSDPLELVKTAFNATMKQISDVAKKSQTMIELQKDPRAKM----ALDQCKELMDYAIGELSKSFEELGKFEFHKVDEALVKLRIWLSATISHEQTCLDGFQGTQGNAGETIKKALKTAVQLTHNGLAMVTEMSN 210          
The following BLAST results are available for this feature:
BLAST of CX301044 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 11
Match NameE-valueIdentityDescription
21KD_DAUCA4.373e-3644.3121 kDa protein OS=Daucus carota PE=2 SV=1[more]
PME2_ARATH8.853e-2132.23Pectinesterase 2 OS=Arabidopsis thaliana GN=PME2 P... [more]
PME3_ARATH6.345e-1933.13Pectinesterase/pectinesterase inhibitor 3 OS=Arabi... [more]
PME3_CITSI5.938e-1735.22Pectinesterase 3 OS=Citrus sinensis PE=1 SV=1[more]
PME1_CITSI5.938e-1735.22Pectinesterase 1 OS=Citrus sinensis GN=PECS-1.1 PE... [more]
PMEU1_SOLLC5.027e-1631.65Pectinesterase/pectinesterase inhibitor U1 OS=Sola... [more]
PME61_ARATH6.566e-1630.41Probable pectinesterase/pectinesterase inhibitor 6... [more]
PME3_PHAVU5.202e-1327.66Pectinesterase 3 OS=Phaseolus vulgaris GN=MPE3 PE=... [more]
PME34_ARATH4.404e-1230.23Probable pectinesterase/pectinesterase inhibitor 3... [more]
PME28_ARATH4.869e-1125.75Putative pectinesterase/pectinesterase inhibitor 2... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC08005B03SK PhyRootSw1 Citrus sinensis cDNA clone C08005B03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX301044 ID=CX301044; Name=CX301044; organism=Citrus sinensis; type=EST; length=697bp
CCATATATTCAGAATTCAGAAAAAGAGCAAGAGAGAAAATGGAATCTTCA
TCATCAAAATATTTGCTCATTTTACTAGCCATTTTTTACCTCATAAACTC
AAGCTCAGCATCCAGAAATGTCCCCTCTAAAATTACAGCTAGCACTGAGT
TCATCAAAACATCTTGCAGTTCAACAACTTATCCAACACTTTGCTATAAA
TCCCTTGCTAGACATGCAAGCTTAATCCAAACAAGCCCTAAGCTCCTCGC
CCATGCATCCCTCAACGTGACCCTTGCAAAGGCTAAATCAACGTCAGCCG
TCATGTTAAAGATGTCGAAAAGCCCTGGAATGAAGCCTAGAGAGGCGGAT
GCCATGCAAGATTGTTTGGAGGAGCTGAGTGATTCAGTTGATGAACTCAG
AAAGTCTATTGGCGAAATGGGTCTGATCAAAGCTTCTAACTTTGAACTCA
CAATGAATGATATACAGACTTGGGTTAGTGCTGCTTTGACTGATGATACT
ACTTGCAGCGATGGATTTGAAAAAAATACGGTTAATGGGAAAGTTGTAAG
AGGCCAGATTGTGAAGATTGCCCATATGACTAGCAATGCCTTGGCTTTGA
TCAATAGTTATGCTTCTCTTCATGCTTAATTAGAAACTGTGATGATGATG
AGCTTCAGCATTAATGTTAACTCACATATGTGTATATTGTTAAATCT
back to top