CX301037

Overview
NameCX301037
Unique NameCX301037
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length735
Libraries
Library NameType
PhyRootSw1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1408 contig Csv1_Contig1408:1..730. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX301037 vs. ExPASy Swiss-Prot
Match: RTNLA_ARATH (Reticulon-like protein B1 OS=Arabidopsis thaliana GN=RTNLB1 PE=1 SV=1)

HSP 1 Score: 242.662 bits (618), Expect = 1.583e-63
Identity = 115/169 (68.05%), Postives = 142/169 (84.02%), Query Frame = 2
Query:  227 AFKSKVFRLFGREKPIHHVLGAGKPADIFLWRNKKISAGVLGGATAMWVLFELLEYHLITLVCHISILSLAVLFLWSNASTFINKSPPEIPVVTLPEKFVLEFASALRYEINRALAVLREIASGRDLKKFLGVIAGLWLLSIVGNWWHFVTLFYIVFCLLHTVPVIYEK 733
            + KSKV+RLFGRE+P+H VLG GKPADIF+W+NKK+S GVLGGATA WV+FEL+EYHL+TL+CH+ I+ LAVLFLWSNA+ FINKSPP+IP V +PE+ +L+ AS LR EINR  + LREIASGRDLKKFL  IAGLW+LSI+G  ++F+TL YI   LL TVP+ Y+K
Sbjct:   65 SMKSKVYRLFGREQPVHKVLGGGKPADIFMWKNKKMSGGVLGGATAAWVVFELMEYHLLTLLCHVMIVVLAVLFLWSNATMFINKSPPKIPEVHIPEEPILQLASGLRIEINRGFSSLREIASGRDLKKFLIAIAGLWVLSILGGCFNFLTLAYIALVLLFTVPLAYDK 233          
BLAST of CX301037 vs. ExPASy Swiss-Prot
Match: RTNLE_ARATH (Reticulon-like protein B5 OS=Arabidopsis thaliana GN=RTNLB5 PE=1 SV=1)

HSP 1 Score: 241.506 bits (615), Expect = 3.525e-63
Identity = 117/212 (55.19%), Postives = 155/212 (73.11%), Query Frame = 2
Query:  101 MAEHAPEHESADKSLVEKITXXXXXXXXXXXXXXXXXXXXXX-AFKSKVFRLFGREKPIHHVLGAGKPADIFLWRNKKISAGVLGGATAMWVLFELLEYHLITLVCHISILSLAVLFLWSNASTFINKSPPEIPVVTLPEKFVLEFASALRYEINRALAVLREIASGRDLKKFLGVIAGLWLLSIVGNWWHFVTLFYIVFCLLHTVPVIYEK 733
            MAE   +    ++SL+EKI+                       A K+K++R+FGREKP+H VLG GKPAD+FLWR+KK+S  VLG ATA+WVLFEL+EYHL++L+CHISIL+L  LFLWSNA T INK+ P+IP + +PE+  L  AS+LR E+N+A  +LR IA GRDLKKFL V+ GLW++S+VGNW++F+TL YI F +LHTVP++YEK
Sbjct:    1 MAEEIEKSVPTEESLMEKISEKIHHHDSSSSSESEYEKPDSPSAVKAKIYRMFGREKPVHKVLGGGKPADVFLWRDKKLSGAVLGVATAIWVLFELVEYHLLSLLCHISILALGGLFLWSNAHTLINKTSPQIPEIHVPEEAFLVVASSLRNELNQAFVILRSIALGRDLKKFLMVVVGLWIISVVGNWFNFLTLVYICFVILHTVPMLYEK 212          
BLAST of CX301037 vs. ExPASy Swiss-Prot
Match: RTNLB_ARATH (Reticulon-like protein B2 OS=Arabidopsis thaliana GN=RTNLB2 PE=1 SV=1)

HSP 1 Score: 239.195 bits (609), Expect = 1.750e-62
Identity = 111/169 (65.68%), Postives = 141/169 (83.43%), Query Frame = 2
Query:  227 AFKSKVFRLFGREKPIHHVLGAGKPADIFLWRNKKISAGVLGGATAMWVLFELLEYHLITLVCHISILSLAVLFLWSNASTFINKSPPEIPVVTLPEKFVLEFASALRYEINRALAVLREIASGRDLKKFLGVIAGLWLLSIVGNWWHFVTLFYIVFCLLHTVPVIYEK 733
            + KSKV+RLFGRE+P+H VLG GKPADIF+W++KK+S GV GGAT  WVLFEL+EYHL+TL+CH+ I++LAVLFLWSNA+ FI+KSPP+IP V +PE+ +L+ AS LR EINR ++ LREIASGRD+KKFL  IAGLW+LSI+G  + F+TL YI   LL TVP+ Y+K
Sbjct:   61 SLKSKVYRLFGRERPVHKVLGGGKPADIFMWKDKKMSGGVFGGATVAWVLFELMEYHLLTLLCHVMIVALAVLFLWSNATMFIHKSPPKIPEVHIPEEPLLQLASGLRIEINRGISSLREIASGRDIKKFLSAIAGLWVLSILGGCYSFLTLAYIALVLLFTVPLFYDK 229          
BLAST of CX301037 vs. ExPASy Swiss-Prot
Match: RTNLD_ARATH (Reticulon-like protein B4 OS=Arabidopsis thaliana GN=RTNLB4 PE=1 SV=1)

HSP 1 Score: 238.424 bits (607), Expect = 2.984e-62
Identity = 111/169 (65.68%), Postives = 136/169 (80.47%), Query Frame = 2
Query:  227 AFKSKVFRLFGREKPIHHVLGAGKPADIFLWRNKKISAGVLGGATAMWVLFELLEYHLITLVCHISILSLAVLFLWSNASTFINKSPPEIPVVTLPEKFVLEFASALRYEINRALAVLREIASGRDLKKFLGVIAGLWLLSIVGNWWHFVTLFYIVFCLLHTVPVIYEK 733
            +FKSK++RLFGREKP+H VLG GKPADIFLWRNKK+S GVLG  TA WVLFEL EYHL+  +CH +I +LA LFLWSNA TFI+KS P IP V +PE  +L+  S LR EINR L +LR IASG+D+KKF+ VIAGLW+LSI+G+ ++F+TLFY    LL T+PV+YEK
Sbjct:   44 SFKSKIYRLFGREKPVHKVLGGGKPADIFLWRNKKVSGGVLGAVTASWVLFELFEYHLLAFLCHFAIFALAALFLWSNACTFIHKSTPHIPEVHIPEDPILQLVSGLRIEINRGLTLLRNIASGKDVKKFILVIAGLWVLSIIGSCYNFLTLFYTATVLLFTIPVLYEK 212          
BLAST of CX301037 vs. ExPASy Swiss-Prot
Match: RTNLC_ARATH (Reticulon-like protein B3 OS=Arabidopsis thaliana GN=RTNLB3 PE=1 SV=1)

HSP 1 Score: 233.802 bits (595), Expect = 7.351e-61
Identity = 115/169 (68.05%), Postives = 138/169 (81.66%), Query Frame = 2
Query:  227 AFKSKVFRLFGREKPIHHVLGAGKPADIFLWRNKKISAGVLGGATAMWVLFELLEYHLITLVCHISILSLAVLFLWSNASTFINKSPPEIPVVTLPEKFVLEFASALRYEINRALAVLREIASGRDLKKFLGVIAGLWLLSIVGNWWHFVTLFYIVFCLLHTVPVIYEK 733
            + K+K++RLFGRE+P+H + G GKPADIFLWRNKK+S GVLG AT  W+LFELLEY+L+TL  HISIL+LAVLFLWS+ASTFI+KSP  IP V +PE  VL+ AS LR EINR   VLR+IASGRDLKKFL VIAGLW+LS VG+  +F+TL YI   LL T+PV+YEK
Sbjct:   40 SLKTKIYRLFGREQPLHKLFGGGKPADIFLWRNKKVSGGVLGAATVSWILFELLEYNLLTLFGHISILALAVLFLWSSASTFIHKSPLHIPEVHIPEDVVLQLASGLRIEINRGFTVLRDIASGRDLKKFLLVIAGLWVLSKVGSSCNFLTLIYIATVLLFTIPVLYEK 208          
BLAST of CX301037 vs. ExPASy Swiss-Prot
Match: RTNLF_ARATH (Reticulon-like protein B6 OS=Arabidopsis thaliana GN=RTNLB6 PE=1 SV=1)

HSP 1 Score: 232.646 bits (592), Expect = 1.638e-60
Identity = 107/169 (63.31%), Postives = 138/169 (81.66%), Query Frame = 2
Query:  227 AFKSKVFRLFGREKPIHHVLGAGKPADIFLWRNKKISAGVLGGATAMWVLFELLEYHLITLVCHISILSLAVLFLWSNASTFINKSPPEIPVVTLPEKFVLEFASALRYEINRALAVLREIASGRDLKKFLGVIAGLWLLSIVGNWWHFVTLFYIVFCLLHTVPVIYEK 733
            A K+K++RLFGREKP+H VLG G PAD+FLWR+KK+SA VLG ATA+WVLFEL+EYH ++LVCHI I +LA LFL SNA  F+NK+PP+IP + + E+  L   SALR E+N+A  +LR IA GRDLKKFL V+ GLW++S+VGNW++F+TL YI F +LHTVP++YEK
Sbjct:   44 ALKAKIYRLFGREKPVHKVLGGGLPADVFLWRDKKLSASVLGVATAIWVLFELVEYHFLSLVCHILIFALAALFLLSNAHAFMNKTPPKIPEIHIKEEHFLMIVSALRNELNQAFVILRSIALGRDLKKFLMVVFGLWIISVVGNWFNFLTLVYICFVVLHTVPMLYEK 212          
BLAST of CX301037 vs. ExPASy Swiss-Prot
Match: RTNLG_ARATH (Reticulon-like protein B7 OS=Arabidopsis thaliana GN=RTNLB7 PE=2 SV=2)

HSP 1 Score: 180.644 bits (457), Expect = 7.385e-45
Identity = 84/164 (51.22%), Postives = 119/164 (72.56%), Query Frame = 2
Query:  242 VFRLFGREKPIHHVLGAGKPADIFLWRNKKISAGVLGGATAMWVLFELLEYHLITLVCHISILSLAVLFLWSNASTFINKSPPEIPVVTLPEKFVLEFASALRYEINRALAVLREIASGRDLKKFLGVIAGLWLLSIVGNWWHFVTLFYIVFCLLHTVPVIYEK 733
            ++R+FGRE+PIH VLG GKPAD+ LWR+KK++ G+L   T +W+LF      L+T +C  SIL L + FLWSNA   +NKSP  +  + +PEK +L+ ASA+ +E+N A A LR IA  RD+K F+  + GLWL+S++GNW+ F++L YI F L+HTVP++YEK
Sbjct:   51 IYRMFGRERPIHMVLGGGKPADVLLWRDKKVTLGLLSAVTVIWLLFGFGGRRLLTSLCRGSILFLLLSFLWSNA---LNKSPENMMDIYIPEKPLLQAASAMTFELNCAFATLRSIALERDIKNFVMAVIGLWLVSVIGNWFSFLSLLYICFVLIHTVPMLYEK 211          
BLAST of CX301037 vs. ExPASy Swiss-Prot
Match: RTNLH_ARATH (Reticulon-like protein B8 OS=Arabidopsis thaliana GN=RTNLB8 PE=1 SV=1)

HSP 1 Score: 177.948 bits (450), Expect = 4.787e-44
Identity = 83/166 (50.00%), Postives = 118/166 (71.08%), Query Frame = 2
Query:  236 SKVFRLFGREKPIHHVLGAGKPADIFLWRNKKISAGVLGGATAMWVLFELLEYHLITLVCHISILSLAVLFLWSNASTFINKSPPEIPVVTLPEKFVLEFASALRYEINRALAVLREIASGRDLKKFLGVIAGLWLLSIVGNWWHFVTLFYIVFCLLHTVPVIYEK 733
            S+  RLF R+KPIHHVLG GK AD+ LWRNKKISA VL GATA+WVLFE + +H ++LVC+  +L +   F+WSNAS F+N+S   +P + LP+ F  E   A+  E+NR L  L+++A   +LK+FL  + GLW+ ++VG+  +F+T+ YI F   HT+PV+YE+
Sbjct:   40 SRFNRLFDRQKPIHHVLGGGKSADVLLWRNKKISASVLMGATAIWVLFEWINFHFLSLVCYALLLGMIAQFVWSNASGFLNRSQSRVPRLVLPKDFFAEVGVAVGKEVNRGLLFLQDLACKGNLKQFLMAVIGLWVAAMVGSCCNFLTVLYIGFVGAHTMPVLYER 205          
BLAST of CX301037 vs. ExPASy Swiss-Prot
Match: RTNLI_ARATH (Reticulon-like protein B9 OS=Arabidopsis thaliana GN=RTNLB9 PE=2 SV=1)

HSP 1 Score: 139.813 bits (351), Expect = 1.445e-32
Identity = 67/164 (40.85%), Postives = 100/164 (60.98%), Query Frame = 2
Query:  239 KVFRLFGREKPIHHVLGAGKPADIFLWRNKKISAGVLGGATAMWVLFELLEYHLITLVCHISILSLAVLFLWSNASTFINKSPPEIPVVTLPEKFVLEFASALRYEINRALAVLREIASGRDLKKFLGVIAGLWLLSIVGNWWHFVTLFYIVFCLLHTVPVIYE 730
            K  +LF R++ IH + G GK ADI LWR  KI+A ++ G + +W L E++EY+ ITL+CH S+ S+   F+WS AS F+N   P IP V L E    + A +     N+ L  L ++A GRD   F      L+++SI+G +++FV L +I F  + T+PV+YE
Sbjct:   19 KTTKLFTRQRSIHSIFGGGKVADILLWREPKIAATLVIGVSILWFLMEVVEYNFITLICHASMTSMLFFFIWSTASDFLNWERPLIPEVVLDESSFKQLARSFHVRFNQILTKLLDVACGRDPPLFFLTTISLYIVSIIGTYFNFVNLLFIGFVSMQTLPVMYE 182          
BLAST of CX301037 vs. ExPASy Swiss-Prot
Match: RTNLL_ARATH (Reticulon-like protein B12 OS=Arabidopsis thaliana GN=RTNLB12 PE=2 SV=1)

HSP 1 Score: 123.25 bits (308), Expect = 1.399e-27
Identity = 58/162 (35.80%), Postives = 95/162 (58.64%), Query Frame = 2
Query:  248 RLFGREKPIHHVLGAGKPADIFLWRNKKISAGVLGGATAMWVLFELLEYHLITLVCHISILSLAVLFLWSNASTFINKSPPEIPVVTLPEKFVLEFASALRYEINRALAVLREIASGRDLKKFLGVIAGLWLLSIVGNWWHFVTLFYIVFCLLHTVPVIYEK 733
            +LF R++ IH +LG G  AD+ LWR K +S G++    A W++FE   Y + TL+  + +L L++LFLWS +++ +N+  P +P   + E    E +  LR  +N+ L V  +IA  RD + +  V   L+LLS++G+   F TL +    ++ TVP  YE+
Sbjct:    7 KLFNRDRTIHEILGGGIVADVMLWRKKNVSVGIVTVTIASWMVFEAFAYTIFTLISSVLLLLLSILFLWSKSASILNRPSPPLPEFQISEAMAEEASIWLRIHVNKLLQVSHDIAMARDSELYTKVAVSLFLLSLIGSLMDFQTLCHTSVLVVMTVPAFYER 168          
The following BLAST results are available for this feature:
BLAST of CX301037 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 16
Match NameE-valueIdentityDescription
RTNLA_ARATH1.583e-6368.05Reticulon-like protein B1 OS=Arabidopsis thaliana ... [more]
RTNLE_ARATH3.525e-6355.19Reticulon-like protein B5 OS=Arabidopsis thaliana ... [more]
RTNLB_ARATH1.750e-6265.68Reticulon-like protein B2 OS=Arabidopsis thaliana ... [more]
RTNLD_ARATH2.984e-6265.68Reticulon-like protein B4 OS=Arabidopsis thaliana ... [more]
RTNLC_ARATH7.351e-6168.05Reticulon-like protein B3 OS=Arabidopsis thaliana ... [more]
RTNLF_ARATH1.638e-6063.31Reticulon-like protein B6 OS=Arabidopsis thaliana ... [more]
RTNLG_ARATH7.385e-4551.22Reticulon-like protein B7 OS=Arabidopsis thaliana ... [more]
RTNLH_ARATH4.787e-4450.00Reticulon-like protein B8 OS=Arabidopsis thaliana ... [more]
RTNLI_ARATH1.445e-3240.85Reticulon-like protein B9 OS=Arabidopsis thaliana ... [more]
RTNLL_ARATH1.399e-2735.80Reticulon-like protein B12 OS=Arabidopsis thaliana... [more]

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Properties
Property NameValue
Genbank descriptionC08005A08SK PhyRootSw1 Citrus sinensis cDNA clone C08005A08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX301037 ID=CX301037; Name=CX301037; organism=Citrus sinensis; type=EST; length=735bp
CTCGTGCCGAATTCGGCACGAGGTCTCGCTCTCTCTCGTTCTAGAGTCTA
GTACATTTTTCAATTCATTTTCATCGGCGCTTACTCGGCGGCAGAGATCT
ATGGCGGAACATGCACCTGAGCACGAATCAGCCGACAAATCACTGGTGGA
GAAGATCACGGATAAGATCCATGGCCACGACTCCTCGTCATCTGACTCCG
ATGACGACAAGCCGTCGTCTATTGACGCCTTTAAGTCCAAAGTATTCAGG
CTCTTCGGAAGAGAAAAACCTATTCACCATGTCCTCGGAGCTGGAAAACC
TGCTGATATTTTCCTATGGAGGAACAAGAAAATCTCTGCTGGTGTGCTAG
GTGGAGCCACTGCAATGTGGGTTCTCTTTGAGTTGCTGGAATACCATTTA
ATCACTTTGGTCTGCCATATATCGATTCTCTCTCTGGCTGTTCTCTTCCT
GTGGTCCAATGCATCCACATTTATCAACAAATCACCGCCAGAGATTCCAG
TTGTTACACTTCCTGAGAAGTTTGTCCTTGAATTCGCCTCTGCCTTGAGG
TATGAAATCAACCGAGCCTTGGCTGTCCTGCGGGAAATTGCGTCTGGAAG
GGACTTGAAGAAGTTTCTTGGTGTCATTGCTGGCTTGTGGCTTTTGTCTA
TTGTCGGTAATTGGTGGCACTTCGTGACATTATTCTACATTGTATTTTGT
TTGCTACACACCGTGCCCGTGATTTATGAGAAGTA
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