CX301036

Overview
NameCX301036
Unique NameCX301036
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length657
Libraries
Library NameType
PhyRootSw1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX301036 vs. ExPASy Swiss-Prot
Match: RL23_ARATH (60S ribosomal protein L23 OS=Arabidopsis thaliana GN=RPL23A PE=2 SV=3)

HSP 1 Score: 203.371 bits (516), Expect = 8.748e-52
Identity = 93/130 (71.54%), Postives = 115/130 (88.46%), Query Frame = 2
Query:  209 GTKFRISKALPVAAVMNCSDNTGARNLYVIAVSGIRGRLNRLPAAALGDMVLASVKRGKPELRKKVLNAVIIRQRKSWRRKDGTVLYFEDNAGVIVNPKGEMKGSGISGPVAKESADLWPKVSTHAPAII 598
            G KFR+S  LPVAA +NC+DNTGA+NLY+I+V GI+GRLNRLP+A +GDMV+A+VK+GKP+LRKKVL AVI+RQRK WRRKDG  +YFEDNAGVIVNPKGEMKGS I+GP+ KE ADLWP++++ A AI+
Sbjct:   11 GNKFRMSLGLPVAATVNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDLRKKVLPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAITGPIGKECADLWPRIASAANAIV 140          
BLAST of CX301036 vs. ExPASy Swiss-Prot
Match: RL23_TRYCR (60S ribosomal protein L23 OS=Trypanosoma cruzi GN=RPL23 PE=2 SV=1)

HSP 1 Score: 202.601 bits (514), Expect = 1.492e-51
Identity = 101/141 (71.63%), Postives = 124/141 (87.94%), Query Frame = 2
Query:  182 MGGKSASVRGTKFRISKALPVAAVMNCSDNTGARNLYVIAVSGIRGRLNRLPAAALGDMVLASVKRGKPELRKKVLNAVIIRQRKSWRRKDGTVLYFEDNAGVIVNPKG-EMKGSGISGPVAKESA-DLWPKVSTHAPAII 598
            MG + A+V+G +FR+S ALPV AV+NC+DNTGA+NLY+I+V G  GRLNRLPAAALGD+V+ASVK+GKPELR+KVLNAVIIRQRKSWRRKDGTV+YFEDNAGVIVN +G + + SGI+GPVAKE+     PK+S+HAPAI+
Sbjct:    1 MGKEKANVKGCRFRVSLALPVGAVVNCADNTGAKNLYIISVKGYHGRLNRLPAAALGDIVMASVKKGKPELRRKVLNAVIIRQRKSWRRKDGTVIYFEDNAGVIVNSQGRDGRVSGIAGPVAKEAGRPSGPKISSHAPAIV 141          
BLAST of CX301036 vs. ExPASy Swiss-Prot
Match: RL23_YEAST (60S ribosomal protein L23 OS=Saccharomyces cerevisiae GN=RPL23A PE=1 SV=3)

HSP 1 Score: 202.216 bits (513), Expect = 1.949e-51
Identity = 95/139 (68.35%), Postives = 117/139 (84.17%), Query Frame = 2
Query:  182 MGGKSASVRGTKFRISKALPVAAVMNCSDNTGARNLYVIAVSGIRGRLNRLPAAALGDMVLASVKRGKPELRKKVLNAVIIRQRKSWRRKDGTVLYFEDNAGVIVNPKGEMKGSGISGPVAKESADLWPKVSTHAPAII 598
            M G  A  +GTKFRIS  LPV A+MNC+DN+GARNLY+IAV G   RLNRLPAA+LGDMV+A+VK+GKPELRKKV+ A+++RQ KSWRR+DG  LYFEDNAGVI NPKGEMKGS I+GPV KE ADLWP+V++++  ++
Sbjct:    1 MSGNGA--QGTKFRISLGLPVGAIMNCADNSGARNLYIIAVKGSGSRLNRLPAASLGDMVMATVKKGKPELRKKVMPAIVVRQAKSWRRRDGVFLYFEDNAGVIANPKGEMKGSAITGPVGKECADLWPRVASNSGVVV 137          
BLAST of CX301036 vs. ExPASy Swiss-Prot
Match: RL23_RAT (60S ribosomal protein L23 OS=Rattus norvegicus GN=Rpl23 PE=2 SV=1)

HSP 1 Score: 201.06 bits (510), Expect = 4.342e-51
Identity = 99/137 (72.26%), Postives = 118/137 (86.13%), Query Frame = 2
Query:  185 GGKSASVRGTKFRISKALPVAAVMNCSDNTGARNLYVIAVSGIRGRLNRLPAAALGDMVLASVKRGKPELRKKVLNAVIIRQRKSWRRKDGTVLYFEDNAGVIVNPKGEMKGSGISGPVAKESADLWPKVSTHAPAI 595
            GG S    G KFRIS  LPV AV+NC+DNTGA+NLY+I+V GI+GRLNRLPAA +GDMV+A+VK+GKPELRKKV  AV+IRQRKS+RRKDG  LYFEDNAGVIVN KGEMKGS I+GPVAKE ADLWP+++++A +I
Sbjct:    7 GGSS----GAKFRISLGLPVGAVINCADNTGAKNLYIISVKGIKGRLNRLPAAGVGDMVMATVKKGKPELRKKVHPAVVIRQRKSYRRKDGVFLYFEDNAGVIVNNKGEMKGSAITGPVAKECADLWPRIASNAGSI 139          
BLAST of CX301036 vs. ExPASy Swiss-Prot
Match: RL23_PIG (60S ribosomal protein L23 OS=Sus scrofa GN=RPL23 PE=2 SV=1)

HSP 1 Score: 201.06 bits (510), Expect = 4.342e-51
Identity = 99/137 (72.26%), Postives = 118/137 (86.13%), Query Frame = 2
Query:  185 GGKSASVRGTKFRISKALPVAAVMNCSDNTGARNLYVIAVSGIRGRLNRLPAAALGDMVLASVKRGKPELRKKVLNAVIIRQRKSWRRKDGTVLYFEDNAGVIVNPKGEMKGSGISGPVAKESADLWPKVSTHAPAI 595
            GG S    G KFRIS  LPV AV+NC+DNTGA+NLY+I+V GI+GRLNRLPAA +GDMV+A+VK+GKPELRKKV  AV+IRQRKS+RRKDG  LYFEDNAGVIVN KGEMKGS I+GPVAKE ADLWP+++++A +I
Sbjct:    7 GGSS----GAKFRISLGLPVGAVINCADNTGAKNLYIISVKGIKGRLNRLPAAGVGDMVMATVKKGKPELRKKVHPAVVIRQRKSYRRKDGVFLYFEDNAGVIVNNKGEMKGSAITGPVAKECADLWPRIASNAGSI 139          
BLAST of CX301036 vs. ExPASy Swiss-Prot
Match: RL23_MOUSE (60S ribosomal protein L23 OS=Mus musculus GN=Rpl23 PE=2 SV=1)

HSP 1 Score: 201.06 bits (510), Expect = 4.342e-51
Identity = 99/137 (72.26%), Postives = 118/137 (86.13%), Query Frame = 2
Query:  185 GGKSASVRGTKFRISKALPVAAVMNCSDNTGARNLYVIAVSGIRGRLNRLPAAALGDMVLASVKRGKPELRKKVLNAVIIRQRKSWRRKDGTVLYFEDNAGVIVNPKGEMKGSGISGPVAKESADLWPKVSTHAPAI 595
            GG S    G KFRIS  LPV AV+NC+DNTGA+NLY+I+V GI+GRLNRLPAA +GDMV+A+VK+GKPELRKKV  AV+IRQRKS+RRKDG  LYFEDNAGVIVN KGEMKGS I+GPVAKE ADLWP+++++A +I
Sbjct:    7 GGSS----GAKFRISLGLPVGAVINCADNTGAKNLYIISVKGIKGRLNRLPAAGVGDMVMATVKKGKPELRKKVHPAVVIRQRKSYRRKDGVFLYFEDNAGVIVNNKGEMKGSAITGPVAKECADLWPRIASNAGSI 139          
BLAST of CX301036 vs. ExPASy Swiss-Prot
Match: RL23_ICTPU (60S ribosomal protein L23 OS=Ictalurus punctatus GN=rpl23 PE=2 SV=2)

HSP 1 Score: 201.06 bits (510), Expect = 4.342e-51
Identity = 99/137 (72.26%), Postives = 118/137 (86.13%), Query Frame = 2
Query:  185 GGKSASVRGTKFRISKALPVAAVMNCSDNTGARNLYVIAVSGIRGRLNRLPAAALGDMVLASVKRGKPELRKKVLNAVIIRQRKSWRRKDGTVLYFEDNAGVIVNPKGEMKGSGISGPVAKESADLWPKVSTHAPAI 595
            GG S    G KFRIS  LPV AV+NC+DNTGA+NLY+I+V GI+GRLNRLPAA +GDMV+A+VK+GKPELRKKV  AV+IRQRKS+RRKDG  LYFEDNAGVIVN KGEMKGS I+GPVAKE ADLWP+++++A +I
Sbjct:    7 GGSS----GAKFRISLGLPVGAVINCADNTGAKNLYIISVKGIKGRLNRLPAAGVGDMVMATVKKGKPELRKKVHPAVVIRQRKSYRRKDGVFLYFEDNAGVIVNNKGEMKGSAITGPVAKECADLWPRIASNAGSI 139          
BLAST of CX301036 vs. ExPASy Swiss-Prot
Match: RL23_HUMAN (60S ribosomal protein L23 OS=Homo sapiens GN=RPL23 PE=1 SV=1)

HSP 1 Score: 201.06 bits (510), Expect = 4.342e-51
Identity = 99/137 (72.26%), Postives = 118/137 (86.13%), Query Frame = 2
Query:  185 GGKSASVRGTKFRISKALPVAAVMNCSDNTGARNLYVIAVSGIRGRLNRLPAAALGDMVLASVKRGKPELRKKVLNAVIIRQRKSWRRKDGTVLYFEDNAGVIVNPKGEMKGSGISGPVAKESADLWPKVSTHAPAI 595
            GG S    G KFRIS  LPV AV+NC+DNTGA+NLY+I+V GI+GRLNRLPAA +GDMV+A+VK+GKPELRKKV  AV+IRQRKS+RRKDG  LYFEDNAGVIVN KGEMKGS I+GPVAKE ADLWP+++++A +I
Sbjct:    7 GGSS----GAKFRISLGLPVGAVINCADNTGAKNLYIISVKGIKGRLNRLPAAGVGDMVMATVKKGKPELRKKVHPAVVIRQRKSYRRKDGVFLYFEDNAGVIVNNKGEMKGSAITGPVAKECADLWPRIASNAGSI 139          
BLAST of CX301036 vs. ExPASy Swiss-Prot
Match: RL23_BOVIN (60S ribosomal protein L23 OS=Bos taurus GN=RPL23 PE=2 SV=2)

HSP 1 Score: 201.06 bits (510), Expect = 4.342e-51
Identity = 99/137 (72.26%), Postives = 118/137 (86.13%), Query Frame = 2
Query:  185 GGKSASVRGTKFRISKALPVAAVMNCSDNTGARNLYVIAVSGIRGRLNRLPAAALGDMVLASVKRGKPELRKKVLNAVIIRQRKSWRRKDGTVLYFEDNAGVIVNPKGEMKGSGISGPVAKESADLWPKVSTHAPAI 595
            GG S    G KFRIS  LPV AV+NC+DNTGA+NLY+I+V GI+GRLNRLPAA +GDMV+A+VK+GKPELRKKV  AV+IRQRKS+RRKDG  LYFEDNAGVIVN KGEMKGS I+GPVAKE ADLWP+++++A +I
Sbjct:    7 GGSS----GAKFRISLGLPVGAVINCADNTGAKNLYIISVKGIKGRLNRLPAAGVGDMVMATVKKGKPELRKKVHPAVVIRQRKSYRRKDGVFLYFEDNAGVIVNNKGEMKGSAITGPVAKECADLWPRIASNAGSI 139          
BLAST of CX301036 vs. ExPASy Swiss-Prot
Match: RL23_TOBAC (60S ribosomal protein L23 OS=Nicotiana tabacum GN=RPL23 PE=2 SV=1)

HSP 1 Score: 199.904 bits (507), Expect = 9.672e-51
Identity = 93/141 (65.96%), Postives = 119/141 (84.40%), Query Frame = 2
Query:  176 VSMGGKSASVRGTKFRISKALPVAAVMNCSDNTGARNLYVIAVSGIRGRLNRLPAAALGDMVLASVKRGKPELRKKVLNAVIIRQRKSWRRKDGTVLYFEDNAGVIVNPKGEMKGSGISGPVAKESADLWPKVSTHAPAII 598
            +S  G+  S  G KFR+S  LPVAA +NC+DNTGA+NLY+I+V GI+GRLNRLP+A +GDMV+A+VK+GKP+LRKKV+ AV++RQRK WRRKDG  +YFEDNAGVIVN KGEMKGS I+GP+ KE ADLWP++++ A AI+
Sbjct:    1 MSKRGRGGSA-GNKFRMSLGLPVAATINCADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDLRKKVMPAVVVRQRKPWRRKDGVFMYFEDNAGVIVNAKGEMKGSAITGPIGKECADLWPRIASAANAIV 140          
The following BLAST results are available for this feature:
BLAST of CX301036 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RL23_ARATH8.748e-5271.5460S ribosomal protein L23 OS=Arabidopsis thaliana ... [more]
RL23_TRYCR1.492e-5171.6360S ribosomal protein L23 OS=Trypanosoma cruzi GN=... [more]
RL23_YEAST1.949e-5168.3560S ribosomal protein L23 OS=Saccharomyces cerevis... [more]
RL23_RAT4.342e-5172.2660S ribosomal protein L23 OS=Rattus norvegicus GN=... [more]
RL23_PIG4.342e-5172.2660S ribosomal protein L23 OS=Sus scrofa GN=RPL23 P... [more]
RL23_MOUSE4.342e-5172.2660S ribosomal protein L23 OS=Mus musculus GN=Rpl23... [more]
RL23_ICTPU4.342e-5172.2660S ribosomal protein L23 OS=Ictalurus punctatus G... [more]
RL23_HUMAN4.342e-5172.2660S ribosomal protein L23 OS=Homo sapiens GN=RPL23... [more]
RL23_BOVIN4.342e-5172.2660S ribosomal protein L23 OS=Bos taurus GN=RPL23 P... [more]
RL23_TOBAC9.672e-5165.9660S ribosomal protein L23 OS=Nicotiana tabacum GN=... [more]

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Properties
Property NameValue
Genbank descriptionC08005A07SK PhyRootSw1 Citrus sinensis cDNA clone C08005A07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX301036 ID=CX301036; Name=CX301036; organism=Citrus sinensis; type=EST; length=657bp
GAATTCGGCACGAGGGTTTTTTTTTTATGCAAATAATTAATTTCACTAGA
AATGCAAATATCATCATCAACAATCCCATTGACTGAGAATGTTGAATACC
CAATTGTCAACAGATAAATAAGGTCATGAACAAACAAGTGTTTTTCCTCG
TGCCGAATTCGGCACGAGGTTGTAGGTCAGTATGGGTGGAAAGTCCGCTT
CCGTCCGCGGTACCAAGTTCCGCATCTCCAAGGCCCTGCCCGTCGCTGCG
GTCATGAACTGCTCTGACAACACCGGTGCCCGCAACCTGTACGTCATCGC
CGTCTCTGGCATCCGTGGCCGTCTCAACCGTCTGCCCGCTGCCGCCCTCG
GCGACATGGTCCTCGCTAGCGTCAAGCGTGGAAAGCCCGAGCTCCGCAAG
AAGGTCTTGAACGCCGTCATCATCCGTCAGCGCAAGTCCTGGCGCCGAAA
GGATGGCACCGTCCTCTACTTCGAGGATAACGCCGGTGTCATCGTCAACC
CCAAGGGTGAGATGAAGGGATCCGGTATCTCTGGCCCCGTCGCCAAGGAG
TCCGCCGACCTCTGGCCCAAGGTCTCCACTCACGCCCCGGCCATCATCTA
GACGCGTGTTAGGTTTTGAATCTTTCTGTCTTTCGTTTGAAAAAAAAAAA
AAAAAAA
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