CX300939

Overview
NameCX300939
Unique NameCX300939
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length553
Libraries
Library NameType
PhyRootSw1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX300939 vs. ExPASy Swiss-Prot
Match: AOX_BOTFU (Alternative oxidase, mitochondrial OS=Botryotinia fuckeliana GN=aox PE=2 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 1.433e-16
Identity = 55/130 (42.31%), Postives = 70/130 (53.85%), Query Frame = 2
Query:  125 WTLEELDEKMNNLYRHKPQTFSDKVMNTLMYSLYHTFNFLTGYH-------------------PQDPSVRSIQWRLILLESVAGVPGFVAAGFRHFRSLRRLQQDHGWIATLLEEAENERMHLLLCLSTF 457
            +T E++  K+   +R KP+ FSD+V   ++  L    +F TGY                    P   S R    R + LESVAGVPG VA   RH RSLR L++D+GWI TLLEEA NERMHLL  L  +
Sbjct:   84 YTAEQMRSKVYFAHR-KPRDFSDRVALGMVRFLRWCTDFATGYKHNVEAPKKASDSNALTATKPYQMSERKWLIRYVFLESVAGVPGMVAGMLRHLRSLRGLKRDNGWIETLLEEAYNERMHLLTFLKMY 212          
BLAST of CX300939 vs. ExPASy Swiss-Prot
Match: AOX_CRYNV (Alternative oxidase, mitochondrial OS=Cryptococcus neoformans var. grubii GN=AOX1 PE=3 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 1.871e-16
Identity = 59/160 (36.88%), Postives = 78/160 (48.75%), Query Frame = 2
Query:  116 NHIWTLEELDEKMNNLYRHKPQTFSDKVMNTLMYSLYHTFNFLTGYHPQDPSVRSI--------------------QW--RLILLESVAGVPGFVAAGFRHFRSLRRLQQDHGWIATLLEEAENERMHLLLCLST------------------FNAFFLT 475
            N I+T +EL+     +    P TF DK  +  +  L   F+ LTGY P +     +                    +W  R+ILLES+AGVPG V    RH RS+R L++D GWI +LLEEAENERMHLL  ++                   +NAFFLT
Sbjct:  108 NPIYTEKELNTVQ--VVGRAPVTFGDKAAHRTVKFLRKCFDLLTGYTPYEVPASVLAQKPIPIAELRSKGKLLSDQKWLFRIILLESIAGVPGMVGGTLRHLRSMRLLKRDGGWIHSLLEEAENERMHLLTFMTIAQPGIFTRALVLAAQGVFYNAFFLT 265          
BLAST of CX300939 vs. ExPASy Swiss-Prot
Match: AOX_MONFR (Alternative oxidase, mitochondrial OS=Monilinia fructicola GN=AOX1 PE=3 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 2.444e-16
Identity = 54/130 (41.54%), Postives = 71/130 (54.62%), Query Frame = 2
Query:  125 WTLEELDEKMNNLYRHKPQTFSDKVMNTLMYSLYHTFNFLTGYH-------------------PQDPSVRSIQWRLILLESVAGVPGFVAAGFRHFRSLRRLQQDHGWIATLLEEAENERMHLLLCLSTF 457
            +++E++  K+   +R KP+ FSD+V   ++  L    +F TGY                    P   S R    R + LESVAGVPG VA   RH RSLR L++D+GWI TLLEEA NERMHLL  L  +
Sbjct:   81 YSVEQMRSKVYFAHR-KPRDFSDRVALGMVRFLRWCTDFATGYKHNVEAPKTASDSNAVTATKPYQMSERKWLIRYVFLESVAGVPGMVAGMLRHLRSLRGLKRDNGWIETLLEEAYNERMHLLTFLKMY 209          
BLAST of CX300939 vs. ExPASy Swiss-Prot
Match: AOX_BLUGR (Alternative oxidase, mitochondrial OS=Blumeria graminis PE=3 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 7.112e-16
Identity = 52/115 (45.22%), Postives = 64/115 (55.65%), Query Frame = 2
Query:  155 NNLYRHK-PQTFSDKVMNTLMYSLYHTFNFLTGYH----------------PQDPSVRSIQWRLILLESVAGVPGFVAAGFRHFRSLRRLQQDHGWIATLLEEAENERMHLLLCL 448
            N  Y H+ P+ FSD++   L+  L  + +  TGY                 P   S R    R++ LESVAGVPG VA   RH  SLRRL++D+GWI TLLEEA NERMHLL  L
Sbjct:   92 NISYAHRTPKDFSDRIALYLVRFLRFSTDLATGYKHDPVTITENGEKVLKKPYRMSERKWLIRMVFLESVAGVPGMVAGMLRHLHSLRRLKRDNGWIETLLEEAYNERMHLLTFL 206          
BLAST of CX300939 vs. ExPASy Swiss-Prot
Match: AOX_YARLI (Alternative oxidase, mitochondrial OS=Yarrowia lipolytica GN=AOX PE=3 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 9.288e-16
Identity = 52/119 (43.70%), Postives = 69/119 (57.98%), Query Frame = 2
Query:  122 IWTLEELDEKMNNLYRHKPQTFSDKVMNTLMYSLYHTFNFLTGY-HPQD-----PSVRSI--QW--RLILLESVAGVPGFVAAGFRHFRSLRRLQQDHGWIATLLEEAENERMHLLLCL 448
            ++T E++D    N    K +TFSD+V    +  +   F+  TGY HP++     P  R    QW  R + LES+AGVPG VA   RH  SLR L++D  WI +L+EEA NERMHLL  L
Sbjct:   88 VYTKEQMDALEVN--HRKTETFSDRVALRAILLMRIIFDLCTGYKHPKEGEAHLPKFRMTTRQWLDRFLFLESIAGVPGMVAGMIRHLHSLRALRRDRAWIESLVEEAYNERMHLLTFL 204          
BLAST of CX300939 vs. ExPASy Swiss-Prot
Match: AOX_HANAN (Alternative oxidase, mitochondrial OS=Hansenula anomala GN=AOX1 PE=1 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 9.288e-16
Identity = 50/118 (42.37%), Postives = 66/118 (55.93%), Query Frame = 2
Query:  173 KPQTFSDKVMNTLMYSLYHTFNFLTGYH-PQDPSVRSIQW--------------RLILLESVAGVPGFVAAGFRHFRSLRRLQQDHGWIATLLEEAENERMHLLLCLSTFNAFFLTRW 481
            +P+T  DK+ +  +     +F+F+TGY  P+D +     W              R I LESVAGVPG VAA  RH  SLR L++D  WI TLL+EA NERMHLL  +   N  + TR+
Sbjct:   83 EPKTIGDKIADRGVKFCRASFDFVTGYKKPKDVNGMLKSWEGTRYEMTEEKWLTRCIFLESVAGVPGMVAAFIRHLHSLRLLKRDKAWIETLLDEAYNERMHLLTFIKIGNPSWFTRF 200          
BLAST of CX300939 vs. ExPASy Swiss-Prot
Match: AOX_NEUCR (Alternative oxidase, mitochondrial OS=Neurospora crassa GN=aod-1 PE=1 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 1.213e-15
Identity = 51/124 (41.13%), Postives = 65/124 (52.42%), Query Frame = 2
Query:  116 NHIWTLEELDEKMNNLYRHKPQTFSDKVMNTLMYSLYHTFNFLTGYHPQ--------------DPSVRSIQW--RLILLESVAGVPGFVAAGFRHFRSLRRLQQDHGWIATLLEEAENERMHLL 439
            +H WT EE+   +      KP+T  D +   L+       +  TG  P+              D  +   QW  R I LES+AGVPG VA   RH  SLRRL++D+GWI TLLEE+ NERMHLL
Sbjct:   86 HHGWTEEEMTSVVPE--HRKPETVGDWLAWKLVRICRWATDIATGIRPEQQVDKHHPTTATSADKPLTEAQWLVRFIFLESIAGVPGMVAGMLRHLHSLRRLKRDNGWIETLLEESYNERMHLL 207          
BLAST of CX300939 vs. ExPASy Swiss-Prot
Match: AOX_VENIN (Alternative oxidase, mitochondrial OS=Venturia inaequalis GN=AOX1 PE=3 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 3.529e-15
Identity = 50/136 (36.76%), Postives = 74/136 (54.41%), Query Frame = 2
Query:  122 IWTLEELDEKMNNLYRHKPQTFSDKVMNTLMYSLYHTFNFLTGY--------HPQDPSVRSIQW---------RLILLESVAGVPGFVAAGFRHFRSLRRLQQDHGWIATLLEEAENERMHLLLCLSTFNAFFLTR 478
            I+T+E++++    +     + +SDKV    +  L    + ++GY        H QDP     ++         R + LESVAGVPG VA   RH  S+RR+++DHGWI TLLEE+ NERMHLL+ L  +   +  R
Sbjct:   88 IYTVEQMNQVA--VAHRDTRNWSDKVALIAVKLLRWGLDTVSGYKHGKAQALHAQDPQEAQKRYGMTGKQYLVRNVFLESVAGVPGMVAGMLRHLHSMRRMKRDHGWIETLLEESYNERMHLLIFLKLYEPGWFMR 221          
BLAST of CX300939 vs. ExPASy Swiss-Prot
Match: AOX_GELSS (Alternative oxidase, mitochondrial OS=Gelasinospora sp. (strain S23) GN=aod-1 PE=3 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 3.529e-15
Identity = 51/124 (41.13%), Postives = 65/124 (52.42%), Query Frame = 2
Query:  116 NHIWTLEELDEKMNNLYRHKPQTFSDKVMNTLMYSLYHTFNFLTGYHPQ--------------DPSVRSIQW--RLILLESVAGVPGFVAAGFRHFRSLRRLQQDHGWIATLLEEAENERMHLL 439
            +H WT EE+   +      KP+T  D +   L+       +  TG  P+              D  +   QW  R I LES+AGVPG VA   RH  SLRRL++D+GWI TLLEE+ NERMHLL
Sbjct:   86 HHGWTEEEMISVVPE--HRKPETVGDWLAWKLVRICRWGTDIATGIRPEQQVDKNHPTTATSADKPLTEAQWLVRFIFLESIAGVPGMVAGMLRHLHSLRRLKRDNGWIETLLEESYNERMHLL 207          
BLAST of CX300939 vs. ExPASy Swiss-Prot
Match: AOX_PICST (Alternative oxidase, mitochondrial OS=Pichia stipitis GN=STO1 PE=3 SV=2)

HSP 1 Score: 76.6406 bits (187), Expect = 8.693e-14
Identity = 48/121 (39.67%), Postives = 66/121 (54.55%), Query Frame = 2
Query:  164 YRHKP-QTFSDKVMNTLMYSLYHTFNFLTGYHPQ------DPSVRSIQW---------RLILLESVAGVPGFVAAGFRHFRSLRRLQQDHGWIATLLEEAENERMHLLLCLSTFNAFFLTR 478
            Y H+P +TF DK+    +  +  +F+F+TGY         D   +  ++         R I LES+AGVPG VA+  RH  SLR L++D  WI TLL+EA NERMHLL  +      + TR
Sbjct:   96 YEHRPPRTFGDKMAFRGIELVRGSFDFVTGYKKPKTQADIDSGFKGTRYEMTEGKWLTRCIFLESIAGVPGAVASFIRHLHSLRLLKRDKAWIETLLDEAFNERMHLLTFIKIGKPSWFTR 216          
The following BLAST results are available for this feature:
BLAST of CX300939 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 22
Match NameE-valueIdentityDescription
AOX_BOTFU1.433e-1642.31Alternative oxidase, mitochondrial OS=Botryotinia ... [more]
AOX_CRYNV1.871e-1636.88Alternative oxidase, mitochondrial OS=Cryptococcus... [more]
AOX_MONFR2.444e-1641.54Alternative oxidase, mitochondrial OS=Monilinia fr... [more]
AOX_BLUGR7.112e-1645.22Alternative oxidase, mitochondrial OS=Blumeria gra... [more]
AOX_YARLI9.288e-1643.70Alternative oxidase, mitochondrial OS=Yarrowia lip... [more]
AOX_HANAN9.288e-1642.37Alternative oxidase, mitochondrial OS=Hansenula an... [more]
AOX_NEUCR1.213e-1541.13Alternative oxidase, mitochondrial OS=Neurospora c... [more]
AOX_VENIN3.529e-1536.76Alternative oxidase, mitochondrial OS=Venturia ina... [more]
AOX_GELSS3.529e-1541.13Alternative oxidase, mitochondrial OS=Gelasinospor... [more]
AOX_PICST8.693e-1439.67Alternative oxidase, mitochondrial OS=Pichia stipi... [more]

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Properties
Property NameValue
Genbank descriptionC08003H09SK PhyRootSw1 Citrus sinensis cDNA clone C08003H09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX300939 ID=CX300939; Name=CX300939; organism=Citrus sinensis; type=EST; length=553bp
CAATATTCATTTCCGCGCTTCTCCGCGTCCTCATCCTTTGCAAGCAAAAG
GAAGCCCTTTAAACCCCGCAAAATATTACGAGGAACATATTGGAGACCAT
ACAGGTCGTCAACAGAATCATATTTGGACGTTAGAGGAATTAGACGAGAA
AATGAATAACTTGTATCGTCATAAACCACAAACTTTCTCTGATAAAGTTA
TGAATACACTCATGTATTCCCTTTACCATACATTTAATTTCCTCACTGGA
TATCATCCTCAAGATCCTTCTGTGAGATCGATTCAATGGCGATTGATTTT
ATTAGAGTCTGTCGCTGGTGTGCCAGGCTTCGTGGCAGCGGGATTCCGTC
ATTTCCGCTCTTTGCGCCGCTTACAACAAGACCATGGATGGATTGCTACT
CTTTTAGAGGAAGCTGAAAACGAGCGTATGCATTTATTGCTTTGTTTGAG
TACGTTTAATGCTTTCTTCCTCACTCGTTGGTAGTATTGGCTGGTCAATA
TGTGATGACACCTTTCCTATGAGCATTTATTTAGTTCATCCAAAGTCCAT
GCA
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