CX300903

Overview
NameCX300903
Unique NameCX300903
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length439
Libraries
Library NameType
PhyRootSw1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig7917 contig Csv1_Contig7917:263..701. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
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BLAST of CX300903 vs. ExPASy Swiss-Prot
Match: Y1341_ORYSJ (B3 domain-containing protein Os01g0234100 OS=Oryza sativa subsp. japonica GN=Os01g0234100 PE=2 SV=1)

HSP 1 Score: 116.701 bits (291), Expect = 4.061e-26
Identity = 53/112 (47.32%), Postives = 80/112 (71.43%), Query Frame = 3 
Query:   18 EGFKISTPPVQFKDVTSLDNFNILVDGLVVDSELPEDIRCNYYKLCCSQNAFLHENLAQGINFKLIVGTISEIVNIADALRAC-KFTTSRDEFAMWDKTLKAFELLGMSVGF 350
            +G + S   + F DV S  NFNI+VDGLV+D + P+  R  YY+LCC+Q +FLH +L + ++  L+VG I E +NIA+ +RAC   T+S+++F +W KTL++F+LLGM+V F
Sbjct:  303 DGIRFSDSEMSFDDVMSYSNFNIVVDGLVIDCKFPDHQRRTYYELCCAQKSFLHRHLLRQLSLTLVVGVIMETINIAEGIRACGAGTSSQEDFLIWKKTLQSFDLLGMNVAF 414
The following BLAST results are available for this feature:
BLAST of CX300903 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
Y1341_ORYSJ4.061e-2647.32B3 domain-containing protein Os01g0234100 OS=Oryza... [more]
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Properties
Property NameValue
Genbank descriptionC08003E07SK PhyRootSw1 Citrus sinensis cDNA clone C08003E07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX300903 ID=CX300903; Name=CX300903; organism=Citrus sinensis; type=EST; length=439bp
ACGAATTCGGCACGAGGGAAGGTTTCAAAATATCAACACCTCCTGTTCAG
TTTAAAGATGTCACGAGTTTAGACAACTTCAACATCCTGGTAGATGGACT
GGTTGTAGATTCTGAGCTCCCTGAAGATATTCGGTGTAACTACTACAAGC
TTTGCTGTAGTCAGAATGCATTCCTTCATGAGAATCTTGCACAGGGTATC
AATTTCAAGTTGATTGTTGGAACTATTTCTGAAATCGTCAACATTGCAGA
TGCCTTGAGAGCTTGCAAGTTTACTACATCCCGTGATGAATTTGCTATGT
GGGACAAGACTCTGAAAGCCTTTGAGCTTTTGGGCATGAGTGTCGGCTTC
TTACGTGCTCGCCTACGCCGGCTTCAGAGATTAGCTTTTGAATCAGAAGG
TGCCGAGGACACAAGGAGGTATATAGAAGCTAAAGCTCA
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