CX300902

Overview
NameCX300902
Unique NameCX300902
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length520
Libraries
Library NameType
PhyRootSw1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX300902 vs. ExPASy Swiss-Prot
Match: GLYG2_HUMAN (Glycogenin-2 OS=Homo sapiens GN=GYG2 PE=1 SV=2)

HSP 1 Score: 84.3445 bits (207), Expect = 3.621e-16
Identity = 59/171 (34.50%), Postives = 83/171 (48.54%), Query Frame = 1
Query:    1 WQLTDYDKIIFIDADLLILRNIDFLFEMPEITATGNNA--TLFNSGVMVVEPSNCTFQLLMDHIYEIESYNGGDQGYLNEIFTWWHR--IPKHMNFLKHFWEGDEGEKKHMKNRLFGADPPILYVLHYLGN-KPWLCFRDYDCNWNVDILQEFASDIAHKT-----WWKVH 483
            W LT Y K +F+DAD L+L N+D LF+  E +A  +      FNSGV V +PS  T +LL+ H  E  S++G DQG LN  F  W    I KH+ F+ +          +  +  F        V+H+LG+ KPW     Y+      + Q  AS   H+      WW V+
Sbjct:  123 WTLTHYSKCVFLDADTLVLSNVDELFDRGEFSAAPDPGWPDCFNSGVFVFQPSLHTHKLLLQHAMEHGSFDGADQGLLNSFFRNWSTTDIHKHLPFIYNL----SSNTMYTYSPAFKQFGSSAKVVHFLGSMKPW--NYKYNPQSGSVLEQGSASSSQHQAAFLHLWWTVY 287          
BLAST of CX300902 vs. ExPASy Swiss-Prot
Match: GLYG_RABIT (Glycogenin-1 OS=Oryctolagus cuniculus GN=GYG1 PE=1 SV=3)

HSP 1 Score: 80.8777 bits (198), Expect = 4.003e-15
Identity = 54/135 (40.00%), Postives = 72/135 (53.33%), Query Frame = 1
Query:    1 WQLTDYDKIIFIDADLLILRNIDFLFEMPEITATGNNA--TLFNSGVMVVEPSNCTFQLLMDHIYEIESYNGGDQGYLNEIFTWWHR--IPKHMNFLKHFWEGDEGEKKHMKNRLFGADPPILYVLHYLG-NKPW 390
            W LT Y K +F+DAD L+L NID LFE  E++A  +      FNSGV V +PS  T+  L+    E  S++GGDQG LN  F  W    I KH+ F+ +              + FGA+     V+H+LG  KPW
Sbjct:   90 WSLTQYSKCVFMDADTLVLANIDDLFEREELSAAPDPGWPDCFNSGVFVYQPSVETYNQLLHVASEQGSFDGGDQGLLNTFFNSWATTDIRKHLPFIYNL-SSISIYSYLPAFKAFGANAK---VVHFLGQTKPW 220          
BLAST of CX300902 vs. ExPASy Swiss-Prot
Match: GLYG_RAT (Glycogenin-1 OS=Rattus norvegicus GN=Gyg1 PE=2 SV=4)

HSP 1 Score: 80.4925 bits (197), Expect = 5.228e-15
Identity = 53/135 (39.26%), Postives = 71/135 (52.59%), Query Frame = 1
Query:    1 WQLTDYDKIIFIDADLLILRNIDFLFEMPEITATGNNA--TLFNSGVMVVEPSNCTFQLLMDHIYEIESYNGGDQGYLNEIFTWWHR--IPKHMNFLKHFWEGDEGEKKHMKNRLFGADPPILYVLHYLG-NKPW 390
            W LT Y K +F+DAD L+L NID LFE  E++A  +      FNSGV V +PS  T+  L+    E  S++GGDQG LN  F+ W    I KH+ F+ +          +     F A      V+H+LG  KPW
Sbjct:   90 WSLTQYSKCVFMDADTLVLSNIDDLFEREELSAAPDPGWPDCFNSGVFVYQPSIETYNQLLHLASEQGSFDGGDQGLLNTYFSGWATTDITKHLPFVYNL----SSLSIYSYLPAFKAFGKNAKVVHFLGRTKPW 220          
BLAST of CX300902 vs. ExPASy Swiss-Prot
Match: GLYG_MOUSE (Glycogenin-1 OS=Mus musculus GN=Gyg1 PE=2 SV=3)

HSP 1 Score: 80.4925 bits (197), Expect = 5.228e-15
Identity = 53/135 (39.26%), Postives = 71/135 (52.59%), Query Frame = 1
Query:    1 WQLTDYDKIIFIDADLLILRNIDFLFEMPEITATGNNA--TLFNSGVMVVEPSNCTFQLLMDHIYEIESYNGGDQGYLNEIFTWWHR--IPKHMNFLKHFWEGDEGEKKHMKNRLFGADPPILYVLHYLG-NKPW 390
            W LT Y K +F+DAD L+L NID LFE  E++A  +      FNSGV V +PS  T+  L+    E  S++GGDQG LN  F+ W    I KH+ F+ +          +     F A      V+H+LG  KPW
Sbjct:   90 WSLTQYSKCVFMDADTLVLSNIDDLFEREELSAAPDPGWPDCFNSGVFVYQPSIETYNQLLHLASEQGSFDGGDQGLLNTYFSGWATTDITKHLPFVYNL----SSISIYSYLPAFKAFGKNAKVVHFLGRTKPW 220          
BLAST of CX300902 vs. ExPASy Swiss-Prot
Match: GLYG_HUMAN (Glycogenin-1 OS=Homo sapiens GN=GYG1 PE=1 SV=4)

HSP 1 Score: 80.4925 bits (197), Expect = 5.228e-15
Identity = 53/135 (39.26%), Postives = 73/135 (54.07%), Query Frame = 1
Query:    1 WQLTDYDKIIFIDADLLILRNIDFLFEMPEITATGNNA--TLFNSGVMVVEPSNCTFQLLMDHIYEIESYNGGDQGYLNEIFTWWHR--IPKHMNFLKHFWEGDEGEKKHMKNRLFGADPPILYVLHYLGN-KPW 390
            W LT Y K +F+DAD L+L NID LF+  E++A  +      FNSGV V +PS  T+  L+    E  S++GGDQG LN  F+ W    I KH+ F+ +              ++FGA      V+H+LG  KPW
Sbjct:   90 WSLTQYSKCVFMDADTLVLANIDDLFDREELSAAPDPGWPDCFNSGVFVYQPSVETYNQLLHLASEQGSFDGGDQGILNTFFSSWATTDIRKHLPFIYNL-SSISIYSYLPAFKVFGASAK---VVHFLGRVKPW 220          
The following BLAST results are available for this feature:
BLAST of CX300902 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 5
Match NameE-valueIdentityDescription
GLYG2_HUMAN3.621e-1634.50Glycogenin-2 OS=Homo sapiens GN=GYG2 PE=1 SV=2[more]
GLYG_RABIT4.003e-1540.00Glycogenin-1 OS=Oryctolagus cuniculus GN=GYG1 PE=1... [more]
GLYG_RAT5.228e-1539.26Glycogenin-1 OS=Rattus norvegicus GN=Gyg1 PE=2 SV=... [more]
GLYG_MOUSE5.228e-1539.26Glycogenin-1 OS=Mus musculus GN=Gyg1 PE=2 SV=3[more]
GLYG_HUMAN5.228e-1539.26Glycogenin-1 OS=Homo sapiens GN=GYG1 PE=1 SV=4[more]
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Properties
Property NameValue
Genbank descriptionC08003E05SK PhyRootSw1 Citrus sinensis cDNA clone C08003E05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX300902 ID=CX300902; Name=CX300902; organism=Citrus sinensis; type=EST; length=520bp
TGGCAGTTGACAGATTATGACAAGATAATTTTCATTGATGCTGACCTGCT
TATACTTAGGAACATTGATTTTTTGTTTGAGATGCCCGAAATAACTGCCA
CAGGGAACAATGCTACCCTCTTCAACTCAGGTGTTATGGTGGTTGAGCCA
TCAAATTGTACCTTCCAGCTACTAATGGATCACATCTATGAGATCGAGTC
ATACAATGGTGGAGACCAGGGTTATCTGAATGAAATCTTCACATGGTGGC
ACCGGATTCCAAAACACATGAACTTCTTGAAGCATTTTTGGGAAGGTGAC
GAAGGGGAGAAGAAACATATGAAGAATCGACTCTTTGGAGCTGATCCTCC
GATACTTTATGTCCTTCACTATCTGGGTAACAAACCATGGCTGTGCTTCC
GGGACTACGATTGCAACTGGAATGTGGATATTTTGCAGGAGTTTGCGAGT
GATATTGCGCATAAAACATGGTGGAAGGTGCATGATGCCATGCCGGAACA
CTTGCAAAAGTTTTGCTTGC
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