CX300901

Overview
NameCX300901
Unique NameCX300901
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length594
Libraries
Library NameType
PhyRootSw1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig13455 contig Csv1_Contig13455:275..871. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CX300901 vs. ExPASy Swiss-Prot
Match: ARF1_SALBA (ADP-ribosylation factor 1 OS=Salix bakko GN=ARF1 PE=2 SV=3)

HSP 1 Score: 108.612 bits (270), Expect = 2.389e-23
Identity = 53/55 (96.36%), Postives = 55/55 (100.00%), Query Frame = 2 
Query:  428 TRKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDV 592
            ++KEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDV
Sbjct:   14 SKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDV 68
[Close]
BLAST of CX300901 vs. ExPASy Swiss-Prot
Match: ARF_VIGUN (ADP-ribosylation factor OS=Vigna unguiculata GN=ARF PE=2 SV=3)

HSP 1 Score: 108.227 bits (269), Expect = 3.120e-23
Identity = 53/54 (98.15%), Postives = 54/54 (100.00%), Query Frame = 2 
Query:  431 RKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDV 592
            +KEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDV
Sbjct:   15 KKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDV 68
[Close]
BLAST of CX300901 vs. ExPASy Swiss-Prot
Match: ARF_MAIZE (ADP-ribosylation factor OS=Zea mays GN=ARF1 PE=2 SV=2)

HSP 1 Score: 108.227 bits (269), Expect = 3.120e-23
Identity = 53/54 (98.15%), Postives = 54/54 (100.00%), Query Frame = 2 
Query:  431 RKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDV 592
            +KEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDV
Sbjct:   15 KKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDV 68
[Close]
BLAST of CX300901 vs. ExPASy Swiss-Prot
Match: ARF_DUGJA (ADP-ribosylation factor OS=Dugesia japonica PE=2 SV=3)

HSP 1 Score: 108.227 bits (269), Expect = 3.120e-23
Identity = 53/54 (98.15%), Postives = 54/54 (100.00%), Query Frame = 2 
Query:  431 RKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDV 592
            +KEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDV
Sbjct:   15 KKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDV 68
[Close]
BLAST of CX300901 vs. ExPASy Swiss-Prot
Match: ARF_CRYNE (ADP-ribosylation factor OS=Cryptococcus neoformans GN=ARF PE=1 SV=3)

HSP 1 Score: 108.227 bits (269), Expect = 3.120e-23
Identity = 53/54 (98.15%), Postives = 54/54 (100.00%), Query Frame = 2 
Query:  431 RKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDV 592
            +KEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDV
Sbjct:   15 KKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDV 68
[Close]
BLAST of CX300901 vs. ExPASy Swiss-Prot
Match: ARF_CANAL (ADP-ribosylation factor OS=Candida albicans GN=ARF1 PE=3 SV=4)

HSP 1 Score: 108.227 bits (269), Expect = 3.120e-23
Identity = 53/54 (98.15%), Postives = 54/54 (100.00%), Query Frame = 2 
Query:  431 RKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDV 592
            R+EMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDV
Sbjct:   15 RREMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDV 68
[Close]
BLAST of CX300901 vs. ExPASy Swiss-Prot
Match: ARF3_TAKRU (ADP-ribosylation factor 3 OS=Takifugu rubripes GN=arf3 PE=3 SV=2)

HSP 1 Score: 108.227 bits (269), Expect = 3.120e-23
Identity = 53/54 (98.15%), Postives = 54/54 (100.00%), Query Frame = 2 
Query:  431 RKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDV 592
            +KEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDV
Sbjct:   15 KKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDV 68
[Close]
BLAST of CX300901 vs. ExPASy Swiss-Prot
Match: ARF3_RAT (ADP-ribosylation factor 3 OS=Rattus norvegicus GN=Arf3 PE=2 SV=2)

HSP 1 Score: 108.227 bits (269), Expect = 3.120e-23
Identity = 53/54 (98.15%), Postives = 54/54 (100.00%), Query Frame = 2 
Query:  431 RKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDV 592
            +KEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDV
Sbjct:   15 KKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDV 68
[Close]
BLAST of CX300901 vs. ExPASy Swiss-Prot
Match: ARF3_PONAB (ADP-ribosylation factor 3 OS=Pongo abelii GN=ARF3 PE=2 SV=3)

HSP 1 Score: 108.227 bits (269), Expect = 3.120e-23
Identity = 53/54 (98.15%), Postives = 54/54 (100.00%), Query Frame = 2 
Query:  431 RKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDV 592
            +KEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDV
Sbjct:   15 KKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDV 68
[Close]
BLAST of CX300901 vs. ExPASy Swiss-Prot
Match: ARF3_MOUSE (ADP-ribosylation factor 3 OS=Mus musculus GN=Arf3 PE=2 SV=2)

HSP 1 Score: 108.227 bits (269), Expect = 3.120e-23
Identity = 53/54 (98.15%), Postives = 54/54 (100.00%), Query Frame = 2 
Query:  431 RKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDV 592
            +KEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDV
Sbjct:   15 KKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDV 68
The following BLAST results are available for this feature:
BLAST of CX300901 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 87
Match NameE-valueIdentityDescription
ARF1_SALBA2.389e-2396.36ADP-ribosylation factor 1 OS=Salix bakko GN=ARF1 P... [more]
ARF_VIGUN3.120e-2398.15ADP-ribosylation factor OS=Vigna unguiculata GN=AR... [more]
ARF_MAIZE3.120e-2398.15ADP-ribosylation factor OS=Zea mays GN=ARF1 PE=2 S... [more]
ARF_DUGJA3.120e-2398.15ADP-ribosylation factor OS=Dugesia japonica PE=2 S... [more]
ARF_CRYNE3.120e-2398.15ADP-ribosylation factor OS=Cryptococcus neoformans... [more]
ARF_CANAL3.120e-2398.15ADP-ribosylation factor OS=Candida albicans GN=ARF... [more]
ARF3_TAKRU3.120e-2398.15ADP-ribosylation factor 3 OS=Takifugu rubripes GN=... [more]
ARF3_RAT3.120e-2398.15ADP-ribosylation factor 3 OS=Rattus norvegicus GN=... [more]
ARF3_PONAB3.120e-2398.15ADP-ribosylation factor 3 OS=Pongo abelii GN=ARF3 ... [more]
ARF3_MOUSE3.120e-2398.15ADP-ribosylation factor 3 OS=Mus musculus GN=Arf3 ... [more]

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Properties
Property NameValue
Genbank descriptionC08003E04SK PhyRootSw1 Citrus sinensis cDNA clone C08003E04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX300901 ID=CX300901; Name=CX300901; organism=Citrus sinensis; type=EST; length=594bp
GGGTGTTGAAGTTGGAATTCTGCCTCCAGGAAGCACGTGCTCAAACAAGA
AAGCTTCAAAGGATGGGAGAACGAAGGGACAAAGCTATTAAAGAACTCAG
AGATCAATTAGCCGCAAAGCAACAAGACGCACATGTGGGTACCGAAAAAC
AGAATTTCTGGGAGACCTCAGGTTTCAAGATTGTAGTTTCCATGTCAATG
CTGATCTTGGTGGTATTCTCCAAGCGTTGAAGCATTATGTTATATAGTTA
CCCCTGTGAATAAGGAATGTAGTAACTTAAATGTGGAGAGGTTAGAGAAA
AGCTGTAGGGCCATTTTGCTTGTAGAAAATGCTATAGCTGTAGTGCATCT
GTTTTTGTGCTTTTTGACAATGGAGAATATATTTTTCTTAATTCTCTTAA
AAAAAAAAACCTCGTGCCGAATTCGGCACGAGGAAAGAGATGCGAATTCT
AATGGTTGGTCTTGATGCTGCTGGTAAGACCACTATCTTGTACAAGCTCA
AGCTTGGAGAGATTGTCACCACAATTCCTACCATTGGGTTTAATGTGGAG
ACCGTTGAATATAAGAACATCAGTTTCACTGTGTGGGATGTTGG
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