CX300896

Overview
NameCX300896
Unique NameCX300896
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length633
Libraries
Library NameType
PhyRootSw1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig8417 contig Csv1_Contig8417:82..714. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX300896 vs. ExPASy Swiss-Prot
Match: SUOX_ARATH (Sulfite oxidase OS=Arabidopsis thaliana GN=SOX PE=1 SV=1)

HSP 1 Score: 272.322 bits (695), Expect = 1.418e-72
Identity = 121/161 (75.16%), Postives = 142/161 (88.20%), Query Frame = 2
Query:   23 EGFFMQKDYKMFPPSVNWDNINWKSRRPLMDFPVQCVICSLEDVNVMKPGKAKVSGYAVSGGGRGIERVDISVDGGKNWVEASRYQKTGIPYIADHMSSDKWAWVFFEVIIDIPHSTQIVAKAVDTAANVQPESVETIWNLRGVLNTSWHRVQVRVGHSNM 505
            +GFFMQKDYKMFPPSVNWDNINW SRRP MDFPVQ  ICS+EDV ++KPGK  + GYAVSGGGRGIERVDIS+DGGKNWVEASR Q+ G  YI++H SSDKWAWV FE  ID+  +T+++AKAVD+AANVQPE+VE++WNLRGVLNTSWHRV +R+GHSN+
Sbjct:  233 QGFFMQKDYKMFPPSVNWDNINWSSRRPQMDFPVQSAICSVEDVQMVKPGKVSIKGYAVSGGGRGIERVDISLDGGKNWVEASRTQEPGKQYISEHSSSDKWAWVLFEATIDVSQTTEVIAKAVDSAANVQPENVESVWNLRGVLNTSWHRVLLRLGHSNL 393          
BLAST of CX300896 vs. ExPASy Swiss-Prot
Match: SUOX_MOUSE (Sulfite oxidase, mitochondrial OS=Mus musculus GN=Suox PE=1 SV=2)

HSP 1 Score: 130.568 bits (327), Expect = 6.663e-30
Identity = 66/165 (40.00%), Postives = 97/165 (58.79%), Query Frame = 2
Query:   11 IRHEEGF--FMQKDYKMFPPSVNWDNINWKSRRPLMDFPVQCVICSLEDVNVMKPGKAKVSGYAVSGGGRGIERVDISVDGGKNWVEASRYQKTGIPYIADHMSSDKWAWVFFEVIIDIP---HSTQIVAKAVDTAANVQPESVETIWNLRGVLNTSWHRVQVRV 490
            +  EE +  + ++DYK F PSV+WD +N+     + + P+Q  I   +D  +++ G+  + GYA SGGGR + RVD+SVDGG  W EA    +   P  A       WAW  +++   +P       I+ KAVD + NVQP++V  IWNLRGVL+ +WHRV V+V
Sbjct:  387 VESEESYSHWQRRDYKGFSPSVDWDTVNFDLAPSIQELPIQSAITQPQDGAIVESGEVTIKGYAWSGGGRAVIRVDVSVDGGLTWQEAELEGEEQCPRKA-------WAWRIWQLKAQVPAEQKELNIICKAVDDSYNVQPDTVAPIWNLRGVLSNAWHRVHVQV 544          
BLAST of CX300896 vs. ExPASy Swiss-Prot
Match: SUOX_CHICK (Sulfite oxidase OS=Gallus gallus GN=SUOX PE=1 SV=3)

HSP 1 Score: 126.716 bits (317), Expect = 9.621e-29
Identity = 63/150 (42.00%), Postives = 89/150 (59.33%), Query Frame = 2
Query:   32 FMQKDYKMFPPSVNWDNINWKSRRPLMDFPVQCVICSLEDVNVMKPGKAKVSGYAVSGGGRGIERVDISVDGGKNWVEASRYQKTGIPYIADHMSSDKWAWVFFEVIIDIPHST--QIVAKAVDTAANVQPESVETIWNLRGVLNTSWHR 475
            + Q DYK F P V+WD +++++   + + PVQ  +        + PG+  V GYA SGGGR + RVD+S+DGG+ W  A        P  A       WAW  +E+ + +   T  +IV KAVD++ NVQP+SV  IWNLRGVL+T+WHR
Sbjct:  317 WQQNDYKGFSPCVDWDTVDYRTAPAIQELPVQSAVTQPRPGAAVPPGELTVKGYAWSGGGREVVRVDVSLDGGRTWKVARLMGDKAPPGRA-------WAWALWELTVPVEAGTELEIVCKAVDSSYNVQPDSVAPIWNLRGVLSTAWHR 459          
BLAST of CX300896 vs. ExPASy Swiss-Prot
Match: SUOX_RAT (Sulfite oxidase, mitochondrial OS=Rattus norvegicus GN=Suox PE=1 SV=2)

HSP 1 Score: 125.176 bits (313), Expect = 2.799e-28
Identity = 64/165 (38.79%), Postives = 96/165 (58.18%), Query Frame = 2
Query:   11 IRHEEGF--FMQKDYKMFPPSVNWDNINWKSRRPLMDFPVQCVICSLEDVNVMKPGKAKVSGYAVSGGGRGIERVDISVDGGKNWVEASRYQKTGIPYIADHMSSDKWAWVFFEVIIDIP---HSTQIVAKAVDTAANVQPESVETIWNLRGVLNTSWHRVQVRV 490
            +  EE +  + ++DYK F PSV+WD +++     + + P+Q  I   +D   ++ G+  + GYA SGGGR + RVD+S+DGG  W EA    +   P  A       WAW  +++   +P       I+ KAVD + NVQP++V  IWNLRGVL+ +WHRV V+V
Sbjct:  387 VESEESYSHWQRRDYKGFSPSVDWDTVDFDLAPSIQELPIQSAITQPQDGTTVESGEVIIKGYAWSGGGRAVIRVDVSMDGGLTWQEAELEGEEQHPRKA-------WAWRIWQLKAHVPAEQKELNIICKAVDDSYNVQPDTVAPIWNLRGVLSNAWHRVHVQV 544          
BLAST of CX300896 vs. ExPASy Swiss-Prot
Match: SUOX_MACFA (Sulfite oxidase, mitochondrial OS=Macaca fascicularis GN=SUOX PE=2 SV=3)

HSP 1 Score: 123.25 bits (308), Expect = 1.064e-27
Identity = 66/165 (40.00%), Postives = 94/165 (56.97%), Query Frame = 2
Query:   11 IRHEEGF--FMQKDYKMFPPSVNWDNINWKSRRPLMDFPVQCVICSLEDVNVMKPGKAKVSGYAVSGGGRGIERVDISVDGGKNWVEASRYQKTGIPYIADHMSSDKWAWVFFEVIIDIP---HSTQIVAKAVDTAANVQPESVETIWNLRGVLNTSWHRVQVRV 490
            ++ EE +  + ++DYK F PSV+WD +++ S   + + PVQ  I    D   ++ G+  + GYA SGGGR + RVD+S+DGG  W  A    +   P  A       WAW  +++   +P       IV KAVD   NVQP++V  IWNLRGVL+ +WHRV V V
Sbjct:  386 VQPEESYSHWQRRDYKGFSPSVDWDTVDFDSAPSIQELPVQSAITEPRDGETVESGEVTIKGYAWSGGGRAVIRVDVSLDGGLTWQVAKLDGEEQRPRKA-------WAWRLWQLQAPVPAGQKELNIVCKAVDDGYNVQPDTVAPIWNLRGVLSNAWHRVHVFV 543          
BLAST of CX300896 vs. ExPASy Swiss-Prot
Match: SUOX_HUMAN (Sulfite oxidase, mitochondrial OS=Homo sapiens GN=SUOX PE=1 SV=2)

HSP 1 Score: 122.094 bits (305), Expect = 2.370e-27
Identity = 65/165 (39.39%), Postives = 94/165 (56.97%), Query Frame = 2
Query:   11 IRHEEGF--FMQKDYKMFPPSVNWDNINWKSRRPLMDFPVQCVICSLEDVNVMKPGKAKVSGYAVSGGGRGIERVDISVDGGKNWVEASRYQKTGIPYIADHMSSDKWAWVFFEVIIDIP---HSTQIVAKAVDTAANVQPESVETIWNLRGVLNTSWHRVQVRV 490
            ++ EE +  + ++DYK F PSV+W+ +++ S   + + PVQ  I    D   ++ G+  + GYA SGGGR + RVD+S+DGG  W  A    +   P  A       WAW  +++   +P       IV KAVD   NVQP++V  IWNLRGVL+ +WHRV V V
Sbjct:  386 VQPEESYSHWQRRDYKGFSPSVDWETVDFDSAPSIQELPVQSAITEPRDGETVESGEVTIKGYAWSGGGRAVIRVDVSLDGGLTWQVAKLDGEEQRPRKA-------WAWRLWQLKAPVPAGQKELNIVCKAVDDGYNVQPDTVAPIWNLRGVLSNAWHRVHVYV 543          
BLAST of CX300896 vs. ExPASy Swiss-Prot
Match: SUOX_DROME (Probable sulfite oxidase, mitochondrial OS=Drosophila melanogaster GN=CG7280 PE=2 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 2.806e-20
Identity = 58/169 (34.32%), Postives = 87/169 (51.48%), Query Frame = 2
Query:   14 RHEEGFFMQKDYKMFPPSVNWDNINWKSRRPLMDFPVQCVICSLEDVNVMK----PGKAKVSGYAVSGGGRGIERVDISVDGGKNWVEASRYQKTGIPYIADHMSSDKWAWVFFEVIIDIPHS------TQIVAKAVDTAANVQPESVETIWNLRGVLNTSWHRVQVRV 490
            +  +  + Q DYK F PS +WD +++     +   PV   IC+ +    +K     G   V GYA SGGGR I RVD++ D G +W  A   Q+       +      + W  +   + +  +       +I AKAVD+A NVQPE  E IWNLRGVL  ++H+V+V++
Sbjct:  411 KESDSHWQQNDYKGFSPSTDWDTVDFSKSDAIQAMPVTSAICTPQPGARVKVDDDEGHITVRGYAWSGGGRKIVRVDLTNDEGVSWHVAELEQE-------EMPDGRHYGWSLWTARLPVSEAQRRAGDVEIWAKAVDSAYNVQPEKFEHIWNLRGVLANAYHKVKVKI 572          
BLAST of CX300896 vs. ExPASy Swiss-Prot
Match: NIA2_ARATH (Nitrate reductase [NADH] 2 OS=Arabidopsis thaliana GN=NIA2 PE=1 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 9.665e-13
Identity = 51/161 (31.68%), Postives = 80/161 (49.69%), Query Frame = 2
Query:   20 EEGFFMQKDYKMFPPSVNWDNINWKSRRPLMDFPVQCVICSLEDVNVMKPGKAKVSGYAVSGGGRGIERVDISVDGGKNW-VEASRYQKTGIPYIADHMSSDKWAWVFFEV---IIDIPHSTQIVAKAVDTAANVQPESVETIWNLRGVLNTSWHRVQVRV 490
            EEG++ + +Y      +N  NIN      ++  P    I  +      +P   K  GYA SGGG+ + RV+++VDGG+ W V A  +Q+    Y         W W F+ +   ++D+  + +I  +A D   N QPE +  IWNL G++N  W RV+  V
Sbjct:  347 EEGWWYKPEY-----IINELNIN-----SVITTPCHEEILPINAFTTQRPYTLK--GYAYSGGGKKVTRVEVTVDGGETWNVCALDHQEKPNKY------GKFWCWCFWSLEVEVLDLLSAKEIAVRAWDETLNTQPEKM--IWNLMGMMNNCWFRVKTNV 487          
BLAST of CX300896 vs. ExPASy Swiss-Prot
Match: NIA1_PHAVU (Nitrate reductase [NADH] 1 OS=Phaseolus vulgaris GN=NIA1 PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.262e-12
Identity = 49/175 (28.00%), Postives = 82/175 (46.86%), Query Frame = 2
Query:   14 RHEEGFFMQKDYKMFPPSVNWDNIN-----WKSRRPLMDFPVQCVICSLEDVNVMKPGK------AKVSGYAVSGGGRGIERVDISVDGGKNWVEAS--RYQKTGIPYIADHMSSDKWAWVFFEV---IIDIPHSTQIVAKAVDTAANVQPESVETIWNLRGVLNTSWHRVQVRV 490
            +  +  +  KD K+FP  V+ +  N     +K    + +  +  VI +     ++            + GYA SGGGR + RV++++DGG+ W   S  R +K        +     W W F+ +   ++DI  + +I  +A D A N QPE +  IWN  G++N  W RV+  V
Sbjct:  295 QQSQSHYHYKDNKLFPSHVDAELANEEDWWYKPEYIINEVNINSVITTPSHQEILPINSWTTQMPYSMRGYAYSGGGRKVTRVEVTLDGGETWQVCSVERLEK-------PNKYGKYWCWCFWSLEVEVLDILGAKEIAVRAWDEAQNTQPEKL--IWNTMGMINNCWFRVKTNV 460          
BLAST of CX300896 vs. ExPASy Swiss-Prot
Match: NIA1_MAIZE (Nitrate reductase [NADH] (Fragment) OS=Zea mays PE=1 SV=2)

HSP 1 Score: 72.7886 bits (177), Expect = 1.649e-12
Identity = 34/106 (32.08%), Postives = 60/106 (56.60%), Query Frame = 2
Query:  182 VSGYAVSGGGRGIERVDISVDGGKNWVEASRYQKTGIPYIADHMSSDKWAWVFFEV---IIDIPHSTQIVAKAVDTAANVQPESVETIWNLRGVLNTSWHRVQVRV 490
            + GYA SGGG+ + RV++++DGG+ W+  + + +    Y         W W F+ +   ++D+  + +I  +A D + N QPE +  IWN+ G++N  W RV+  V
Sbjct:   95 LKGYAYSGGGKKVTRVEVTLDGGETWLVCTDHPEKPTKY------GKYWCWCFWSLEVEVLDLLSAKEIAVRAWDESLNTQPEKL--IWNVMGMMNNCWFRVKTNV 192          
The following BLAST results are available for this feature:
BLAST of CX300896 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 27
Match NameE-valueIdentityDescription
SUOX_ARATH1.418e-7275.16Sulfite oxidase OS=Arabidopsis thaliana GN=SOX PE=... [more]
SUOX_MOUSE6.663e-3040.00Sulfite oxidase, mitochondrial OS=Mus musculus GN=... [more]
SUOX_CHICK9.621e-2942.00Sulfite oxidase OS=Gallus gallus GN=SUOX PE=1 SV=3[more]
SUOX_RAT2.799e-2838.79Sulfite oxidase, mitochondrial OS=Rattus norvegicu... [more]
SUOX_MACFA1.064e-2740.00Sulfite oxidase, mitochondrial OS=Macaca fascicula... [more]
SUOX_HUMAN2.370e-2739.39Sulfite oxidase, mitochondrial OS=Homo sapiens GN=... [more]
SUOX_DROME2.806e-2034.32Probable sulfite oxidase, mitochondrial OS=Drosoph... [more]
NIA2_ARATH9.665e-1331.68Nitrate reductase [NADH] 2 OS=Arabidopsis thaliana... [more]
NIA1_PHAVU1.262e-1228.00Nitrate reductase [NADH] 1 OS=Phaseolus vulgaris G... [more]
NIA1_MAIZE1.649e-1232.08Nitrate reductase [NADH] (Fragment) OS=Zea mays PE... [more]

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Properties
Property NameValue
Genbank descriptionC08003D11SK PhyRootSw1 Citrus sinensis cDNA clone C08003D11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX300896 ID=CX300896; Name=CX300896; organism=Citrus sinensis; type=EST; length=633bp
CTCGTGCCGAATTCGGCACGAGGAGGGCTTCTTTATGCAAAAGGACTACA
AAATGTTTCCACCATCTGTGAATTGGGATAACATTAATTGGAAGTCCAGG
AGACCACTAATGGATTTCCCTGTCCAGTGCGTAATTTGCTCACTAGAGGA
CGTGAATGTGATGAAGCCTGGAAAGGCAAAAGTTAGTGGATATGCGGTAT
CAGGAGGTGGCCGTGGAATTGAGAGAGTAGATATATCTGTTGATGGTGGC
AAAAACTGGGTAGAAGCCTCCAGATACCAGAAGACTGGTATTCCATATAT
TGCAGATCACATGAGCAGCGATAAATGGGCATGGGTATTTTTTGAAGTCA
TTATCGATATTCCACATAGCACTCAAATAGTTGCCAAAGCGGTTGACACA
GCTGCAAATGTCCAACCTGAAAGCGTGGAAACCATCTGGAACTTGAGAGG
CGTACTTAACACCTCATGGCACCGGGTTCAGGTTCGAGTTGGACACTCAA
ATATGTAAACTTAAACATAATAGAAGCAAAAATAAAGAAGTTGAATAGTT
TCTTGACAAACTGTAATAAGTAGTTGGCTCTTCGCGATGTGCTGTCCACA
AAAATAATGTGTTTAAGCTTGATCATGATGTTC
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