CX300891

Overview
NameCX300891
Unique NameCX300891
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length321
Libraries
Library NameType
PhyRootSw1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX300891 vs. ExPASy Swiss-Prot
Match: RL38_JULON (60S ribosomal protein L38 OS=Julodis onopordi GN=RpL38 PE=3 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 1.381e-20
Identity = 46/70 (65.71%), Postives = 59/70 (84.29%), Query Frame = 1
Query:   49 MPKLITDIKDFLSKARRKDATALKIKKSSDNTKFKIRTSKYLYTLKVTDKEKADKLAQSLPPSLKKTEIK 258
            MP+ IT+IKDFL KARRKDA ++KIKK+ DN KFK+R S++LYTL +TDKEKA+KL QSLPP L+  E++
Sbjct:    1 MPREITEIKDFLLKARRKDAKSVKIKKNPDNVKFKVRCSRFLYTLVITDKEKAEKLKQSLPPGLQVKEVR 70          
BLAST of CX300891 vs. ExPASy Swiss-Prot
Match: RL38_BRABE (60S ribosomal protein L38 OS=Branchiostoma belcheri GN=RPL38 PE=3 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 1.381e-20
Identity = 48/70 (68.57%), Postives = 56/70 (80.00%), Query Frame = 1
Query:   49 MPKLITDIKDFLSKARRKDATALKIKKSSDNTKFKIRTSKYLYTLKVTDKEKADKLAQSLPPSLKKTEIK 258
            MPK I +IKDFL  ARRKDA ++KIKK+ DN KFK+R S+YLYTL +TDKEKADKL QSLPP L   E+K
Sbjct:    1 MPKQIHEIKDFLLTARRKDAKSVKIKKNKDNVKFKVRCSRYLYTLVITDKEKADKLKQSLPPGLAVKELK 70          
BLAST of CX300891 vs. ExPASy Swiss-Prot
Match: RL38_AEDAE (60S ribosomal protein L38 OS=Aedes aegypti GN=RpL38 PE=3 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 1.804e-20
Identity = 48/70 (68.57%), Postives = 58/70 (82.86%), Query Frame = 1
Query:   49 MPKLITDIKDFLSKARRKDATALKIKKSSDNTKFKIRTSKYLYTLKVTDKEKADKLAQSLPPSLKKTEIK 258
            MP+ I ++KDFL KARRKDA A+KIKK+ +NTKFKIR S+YLYTL V DKEKA+KL QSLPP L+  E+K
Sbjct:    1 MPQEIKEVKDFLIKARRKDARAVKIKKNENNTKFKIRCSRYLYTLVVQDKEKAEKLKQSLPPGLQVKEVK 70          
BLAST of CX300891 vs. ExPASy Swiss-Prot
Match: RL38_PLUXY (60S ribosomal protein L38 OS=Plutella xylostella GN=RpL38 PE=3 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 3.077e-20
Identity = 46/70 (65.71%), Postives = 58/70 (82.86%), Query Frame = 1
Query:   49 MPKLITDIKDFLSKARRKDATALKIKKSSDNTKFKIRTSKYLYTLKVTDKEKADKLAQSLPPSLKKTEIK 258
            MP+ I DIKDFL KARRKDA ++KIKK+ +N KFK+R S++LYTL +TDKEKA+KL QSLPP L+  E+K
Sbjct:    1 MPREIKDIKDFLLKARRKDAKSVKIKKNPENVKFKVRCSRFLYTLVITDKEKAEKLKQSLPPGLQVKEVK 70          
BLAST of CX300891 vs. ExPASy Swiss-Prot
Match: RL38_BOMMO (60S ribosomal protein L38 OS=Bombyx mori GN=RpL38 PE=3 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 3.077e-20
Identity = 46/70 (65.71%), Postives = 58/70 (82.86%), Query Frame = 1
Query:   49 MPKLITDIKDFLSKARRKDATALKIKKSSDNTKFKIRTSKYLYTLKVTDKEKADKLAQSLPPSLKKTEIK 258
            MP+ I DIKDFL KARRKDA ++KIKK+ +N KFK+R S++LYTL +TDKEKA+KL QSLPP L+  E+K
Sbjct:    1 MPREIKDIKDFLIKARRKDAKSVKIKKNPENVKFKVRCSRFLYTLVITDKEKAEKLKQSLPPGLQVKEVK 70          
BLAST of CX300891 vs. ExPASy Swiss-Prot
Match: RL38_SPOFR (60S ribosomal protein L38 OS=Spodoptera frugiperda GN=RpL38 PE=3 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 4.018e-20
Identity = 46/70 (65.71%), Postives = 57/70 (81.43%), Query Frame = 1
Query:   49 MPKLITDIKDFLSKARRKDATALKIKKSSDNTKFKIRTSKYLYTLKVTDKEKADKLAQSLPPSLKKTEIK 258
            MP+ I DIKDFL KARRKDA ++KIKK+  N KFK+R S++LYTL +TDKEKA+KL QSLPP L+  E+K
Sbjct:    1 MPREIKDIKDFLLKARRKDAKSVKIKKNQQNVKFKVRCSRFLYTLVITDKEKAEKLKQSLPPGLQVKEVK 70          
BLAST of CX300891 vs. ExPASy Swiss-Prot
Match: RL38_RAT (60S ribosomal protein L38 OS=Rattus norvegicus GN=Rpl38 PE=1 SV=2)

HSP 1 Score: 95.9005 bits (237), Expect = 6.854e-20
Identity = 46/70 (65.71%), Postives = 56/70 (80.00%), Query Frame = 1
Query:   49 MPKLITDIKDFLSKARRKDATALKIKKSSDNTKFKIRTSKYLYTLKVTDKEKADKLAQSLPPSLKKTEIK 258
            MP+ I +IKDFL  ARRKDA ++KIKK+ DN KFK+R S+YLYTL +TDKEKA+KL QSLPP L   E+K
Sbjct:    1 MPRKIEEIKDFLLTARRKDAKSVKIKKNKDNVKFKVRCSRYLYTLVITDKEKAEKLKQSLPPGLAVKELK 70          
BLAST of CX300891 vs. ExPASy Swiss-Prot
Match: RL38_HUMAN (60S ribosomal protein L38 OS=Homo sapiens GN=RPL38 PE=1 SV=2)

HSP 1 Score: 95.9005 bits (237), Expect = 6.854e-20
Identity = 46/70 (65.71%), Postives = 56/70 (80.00%), Query Frame = 1
Query:   49 MPKLITDIKDFLSKARRKDATALKIKKSSDNTKFKIRTSKYLYTLKVTDKEKADKLAQSLPPSLKKTEIK 258
            MP+ I +IKDFL  ARRKDA ++KIKK+ DN KFK+R S+YLYTL +TDKEKA+KL QSLPP L   E+K
Sbjct:    1 MPRKIEEIKDFLLTARRKDAKSVKIKKNKDNVKFKVRCSRYLYTLVITDKEKAEKLKQSLPPGLAVKELK 70          
BLAST of CX300891 vs. ExPASy Swiss-Prot
Match: RL38_CAEEL (60S ribosomal protein L38 OS=Caenorhabditis elegans GN=rpl-38 PE=2 SV=2)

HSP 1 Score: 95.9005 bits (237), Expect = 6.854e-20
Identity = 46/70 (65.71%), Postives = 58/70 (82.86%), Query Frame = 1
Query:   49 MPKLITDIKDFLSKARRKDATALKIKKSSDNTKFKIRTSKYLYTLKVTDKEKADKLAQSLPPSLKKTEIK 258
            MPK I +IKDFL KARRKDA ++KIKK+S+NTKFK+R + YLYTL V DK+KA+KL QSLPP ++  E+K
Sbjct:    1 MPKEIKEIKDFLVKARRKDAKSVKIKKNSNNTKFKVRCASYLYTLVVADKDKAEKLKQSLPPGIQVKELK 70          
BLAST of CX300891 vs. ExPASy Swiss-Prot
Match: RL38_BOVIN (60S ribosomal protein L38 OS=Bos taurus GN=RPL38 PE=3 SV=4)

HSP 1 Score: 95.9005 bits (237), Expect = 6.854e-20
Identity = 46/70 (65.71%), Postives = 56/70 (80.00%), Query Frame = 1
Query:   49 MPKLITDIKDFLSKARRKDATALKIKKSSDNTKFKIRTSKYLYTLKVTDKEKADKLAQSLPPSLKKTEIK 258
            MP+ I +IKDFL  ARRKDA ++KIKK+ DN KFK+R S+YLYTL +TDKEKA+KL QSLPP L   E+K
Sbjct:    1 MPRKIEEIKDFLLTARRKDAKSVKIKKNKDNVKFKVRCSRYLYTLVITDKEKAEKLKQSLPPGLAVKELK 70          
The following BLAST results are available for this feature:
BLAST of CX300891 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 30
Match NameE-valueIdentityDescription
RL38_JULON1.381e-2065.7160S ribosomal protein L38 OS=Julodis onopordi GN=R... [more]
RL38_BRABE1.381e-2068.5760S ribosomal protein L38 OS=Branchiostoma belcher... [more]
RL38_AEDAE1.804e-2068.5760S ribosomal protein L38 OS=Aedes aegypti GN=RpL3... [more]
RL38_PLUXY3.077e-2065.7160S ribosomal protein L38 OS=Plutella xylostella G... [more]
RL38_BOMMO3.077e-2065.7160S ribosomal protein L38 OS=Bombyx mori GN=RpL38 ... [more]
RL38_SPOFR4.018e-2065.7160S ribosomal protein L38 OS=Spodoptera frugiperda... [more]
RL38_RAT6.854e-2065.7160S ribosomal protein L38 OS=Rattus norvegicus GN=... [more]
RL38_HUMAN6.854e-2065.7160S ribosomal protein L38 OS=Homo sapiens GN=RPL38... [more]
RL38_CAEEL6.854e-2065.7160S ribosomal protein L38 OS=Caenorhabditis elegan... [more]
RL38_BOVIN6.854e-2065.7160S ribosomal protein L38 OS=Bos taurus GN=RPL38 P... [more]

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Properties
Property NameValue
Genbank descriptionC08003D05SK PhyRootSw1 Citrus sinensis cDNA clone C08003D05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX300891 ID=CX300891; Name=CX300891; organism=Citrus sinensis; type=EST; length=321bp
GATAAACGACATCCCTTTTCAATAGGTCCTTCCCCCTTAATTTAAACAAT
GCCAAAGTTAATTACTGATATCAAGGATTTCTTAAGCAAGGCTAGACGTA
AGGATGCCACAGCTTTAAAGATCAAGAAGAGCAGTGATAACACCAAATTC
AAGATCAGAACCTCCAAGTACTTATACACCTTAAAAGTCACTGATAAGGA
GAAGGCTGACAAGCTCGCTCAATCGCTGCCACCAAGCTTGAAGAAGACTG
AAATTAAATAAATGTCTTTATTGGCAAGAAAAGAGGATTGATTATATATT
TGTAATGTAACAAGTCGAGCC
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