EY702464

Overview
NameEY702464
Unique NameEY702464
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length475
Libraries
Library NameType
Sweet orange fruit, development stadium (2 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig8200 contig Csv1_Contig8200:273..747. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of EY702464 vs. ExPASy Swiss-Prot
Match: BRM_ARATH (ATP-dependent helicase BRM OS=Arabidopsis thaliana GN=BRM PE=1 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 2.305e-13
Identity = 38/70 (54.29%), Postives = 46/70 (65.71%), Query Frame = 1 
Query:   13 PPSLGRNIKSPGLGLVPKDMRHTQQTTHQHGWANQPAQPANGGSG--AVGWANPVKRLRTDAGKRRPSQL 216
            P  +GR ++SP  G VP++ R  QQ      W NQP  P N G+   +VGWANPVKRLRTD+GKRRPS L
Sbjct: 2128 PAMIGRGLRSPVSGGVPRETRLAQQQR----WPNQPTHPNNSGAAGDSVGWANPVKRLRTDSGKRRPSHL 2193
The following BLAST results are available for this feature:
BLAST of EY702464 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
BRM_ARATH2.305e-1354.29ATP-dependent helicase BRM OS=Arabidopsis thaliana... [more]
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Properties
Property NameValue
Genbank descriptionCS00-C3-701-007-C06-CT.F Sweet orange fruit, development stadium (2 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY702464 ID=EY702464; Name=EY702464; organism=Citrus sinensis; type=EST; length=475bp
CCACGCGTCCGACCACCTAGCTTGGGTCGTAATATCAAAAGTCCAGGTCT
AGGTTTGGTACCTAAGGATATGCGTCATACTCAGCAAACTACCCACCAGC
ATGGGTGGGCCAACCAGCCTGCTCAACCAGCAAATGGTGGTAGCGGGGCT
GTTGGTTGGGCAAATCCTGTTAAGAGGTTGAGAACAGATGCTGGCAAAAG
GCGGCCAAGTCAATTATGAATTGGTTTGGAGGATAGATAATGTCTTTGTA
ATTAGGGAAAAAAAGGAAAAATTGTTGCTGTTGGGTACAAAATGCAGTGT
ACAAGCAGCCAGCCCTTCCAGGCAGGCCTGTACAAGTGCAGTTAGTTCAT
ACTGTTAACATAGTGTAGGTCTTTGATTCGCCATTGTAAACCTGCTTATC
CATTATTGGAATCCGGTAGTTTCATACCTGCATCTTGCAGGTTAAGTTGC
TCGGCCAAAAAAAAAAAAAAAAAAA
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