CX300878

Overview
NameCX300878
Unique NameCX300878
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length674
Libraries
Library NameType
PhyRootSw1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of CX300878 vs. ExPASy Swiss-Prot
Match: YC22_ARATH (Uncharacterized calcium-binding protein At1g02270 OS=Arabidopsis thaliana GN=At1g02270 PE=2 SV=2)

HSP 1 Score: 85.5001 bits (210), Expect = 2.772e-16
Identity = 53/219 (24.20%), Postives = 107/219 (48.86%), Query Frame = 1 
Query:   25 RESQYPELWQSRATKTRKFFEETLFPNTDIIALQEFWL-NVKYLNIFREEFYKHGYEMLMLQRTGTKLDAVVLLVKTNTFEIQKTENVYLCNMRDRVAIMAWLK---------HKQTGKDVIVANTHLSFPHNNLESISQVQQMEIITKVMDNFAHRYDISHVTRLVVGDFNAEMKSRVCDHLRKIGYSSCFEICPPFNSQPDSTSPPATSHNNNGDDV 651
            RES +  LW +R    ++  +  L   + +I LQE W+ N + +N++  +    GY +  L RT ++ D ++  +  + F++     +   +  DRVA +  +K          +   ++VI+ NTHL FPH++  SI ++ Q+  I + ++ +     ++H+  ++ GD+N   +  V   LR  G+ S ++    +    DS +    SH N+  ++
Sbjct:   94 RESDFRTLWLAR---NQRILDLLLHQRSSVICLQEVWVGNEELVNMYHHQLSSSGYTIYQLARTNSRGDGLLTAIHKDHFKVVNYRELLFNDFGDRVAQLLHVKTVIPFPLNGKQDVQQEVIIVNTHLLFPHDSSLSIVRLHQVYKILEYLEAYQKENKLNHMPIILCGDWNGSKRGHVYKFLRSQGFISSYDDAHQYT---DSDAHRWVSHRNHRGNI 306
The following BLAST results are available for this feature:
BLAST of CX300878 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
YC22_ARATH2.772e-1624.20Uncharacterized calcium-binding protein At1g02270 ... [more]
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Properties
Property NameValue
Genbank descriptionC08003C02SK PhyRootSw1 Citrus sinensis cDNA clone C08003C02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX300878 ID=CX300878; Name=CX300878; organism=Citrus sinensis; type=EST; length=674bp
CTCGTGCCGAATTCGGCACGAGGGCGAGAGTCGCAGTACCCTGAGCTGTG
GCAATCGCGAGCAACGAAGACAAGGAAATTCTTCGAAGAAACGTTATTTC
CAAACACTGATATCATCGCTCTACAAGAGTTCTGGCTAAATGTCAAATAT
TTGAATATCTTTCGAGAAGAATTCTATAAGCATGGCTATGAGATGCTGAT
GTTACAGCGAACAGGAACAAAGCTTGACGCGGTTGTTTTACTCGTCAAGA
CGAACACCTTCGAGATACAGAAGACAGAAAATGTTTATCTCTGTAATATG
AGAGATCGAGTCGCTATTATGGCATGGCTTAAACACAAGCAGACAGGCAA
AGATGTCATCGTGGCGAATACTCACTTGTCCTTCCCTCACAATAACCTTG
AGTCCATCTCACAGGTCCAGCAGATGGAGATCATTACAAAGGTCATGGAC
AACTTTGCACATCGTTATGACATATCTCATGTCACACGATTAGTTGTGGG
AGATTTCAATGCTGAGATGAAATCGAGGGTGTGCGATCATCTGAGGAAGA
TCGGTTATTCGTCATGCTTTGAGATCTGTCCGCCTTTCAACTCCCAACCT
GACTCAACTTCACCCCCAGCAACCAGTCATAACAATAACGGTGATGACGT
GACATCACCCTTCTCTCGTTCGAT
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