CX300873

Overview
NameCX300873
Unique NameCX300873
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length590
Libraries
Library NameType
PhyRootSw1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CX300873_ssr390 microsatellite CX300873_ssr390:390..401. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of CX300873 vs. ExPASy Swiss-Prot
Match: STP14_ARATH (Sugar transport protein 14 OS=Arabidopsis thaliana GN=STP14 PE=2 SV=2)

HSP 1 Score: 78.1814 bits (191), Expect = 3.418e-14
Identity = 31/50 (62.00%), Postives = 42/50 (84.00%), Query Frame = 1
Query:    1 KFGIFLVFGGLVVIMSAFIYFFLPETKQVPIEEIYLLFENHWFWKRIVKE 150
            K+GIFL+F GL++ M +F+YF LPETKQVPIEE+YLL+  HW WK+ V++
Sbjct:  452 KYGIFLLFAGLILGMGSFVYFLLPETKQVPIEEVYLLWRQHWLWKKYVED 501          
BLAST of CX300873 vs. ExPASy Swiss-Prot
Match: STA_RICCO (Sugar carrier protein A OS=Ricinus communis GN=STA PE=2 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 2.215e-13
Identity = 32/48 (66.67%), Postives = 38/48 (79.17%), Query Frame = 1
Query:    1 KFGIFLVFGGLVVIMSAFIYFFLPETKQVPIEEIYLLFENHWFWKRIV 144
            KFGIFL F G V +M+AF+Y FLPETK VPIEE+  L+  HWFWK+IV
Sbjct:  451 KFGIFLFFAGWVTVMTAFVYIFLPETKGVPIEEMIFLWRKHWFWKKIV 498          
BLAST of CX300873 vs. ExPASy Swiss-Prot
Match: STP7_ARATH (Sugar transport protein 7 OS=Arabidopsis thaliana GN=STP7 PE=2 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 8.418e-13
Identity = 30/50 (60.00%), Postives = 39/50 (78.00%), Query Frame = 1
Query:    1 KFGIFLVFGGLVVIMSAFIYFFLPETKQVPIEEIYLLFENHWFWKRIVKE 150
            KFGIFL F G V +M+ F+YF LPETK VPIEE+ LL+  HWFWK+++ +
Sbjct:  451 KFGIFLFFAGWVTVMTIFVYFLLPETKGVPIEEMTLLWSKHWFWKKVLPD 500          
BLAST of CX300873 vs. ExPASy Swiss-Prot
Match: HEX6_RICCO (Hexose carrier protein HEX6 OS=Ricinus communis GN=HEX6 PE=2 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.099e-12
Identity = 29/51 (56.86%), Postives = 43/51 (84.31%), Query Frame = 1
Query:    1 KFGIFLVFGGLVVIMSAFIYFFLPETKQVPIEEIYLLFENHWFWKRIVKED 153
            K GIF  FGG VV+M+AF++F LPETK+VPIE++ +++ +HWFWK+I+ E+
Sbjct:  449 KSGIFFFFGGWVVVMTAFVHFLLPETKKVPIEKMDIVWRDHWFWKKIIGEE 499          
BLAST of CX300873 vs. ExPASy Swiss-Prot
Match: STP10_ARATH (Sugar transport protein 10 OS=Arabidopsis thaliana GN=STP10 PE=2 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 7.127e-12
Identity = 29/51 (56.86%), Postives = 38/51 (74.51%), Query Frame = 1
Query:    1 KFGIFLVFGGLVVIMSAFIYFFLPETKQVPIEEIYLLFENHWFWKRIVKED 153
            KFG+F  F  +V IM+ FIYF LPETK VPIEE+  +++ HWFWK+ + ED
Sbjct:  452 KFGLFYFFASMVAIMTVFIYFLLPETKGVPIEEMGRVWKQHWFWKKYIPED 502          
BLAST of CX300873 vs. ExPASy Swiss-Prot
Match: STP1_ARATH (Sugar transport protein 1 OS=Arabidopsis thaliana GN=STP1 PE=1 SV=2)

HSP 1 Score: 69.707 bits (169), Expect = 1.216e-11
Identity = 28/50 (56.00%), Postives = 39/50 (78.00%), Query Frame = 1
Query:    1 KFGIFLVFGGLVVIMSAFIYFFLPETKQVPIEEIYLLFENHWFWKRIVKE 150
            KFG+FLVF   VV+MS F+Y FLPETK +PIEE+  ++ +HW+W R V++
Sbjct:  452 KFGLFLVFAFFVVVMSIFVYIFLPETKGIPIEEMGQVWRSHWYWSRFVED 501          
BLAST of CX300873 vs. ExPASy Swiss-Prot
Match: STP9_ARATH (Sugar transport protein 9 OS=Arabidopsis thaliana GN=STP9 PE=1 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 3.537e-11
Identity = 29/51 (56.86%), Postives = 39/51 (76.47%), Query Frame = 1
Query:    1 KFGIFLVFGGLVVIMSAFIYFFLPETKQVPIEEIYLLFENHWFWKRIVKED 153
            KFG+F  FGG+V +M+ FIYF LPETK VPIEE+  +++ H FWKR + +D
Sbjct:  453 KFGLFYFFGGMVAVMTVFIYFLLPETKGVPIEEMGRVWKQHPFWKRYMPDD 503          
BLAST of CX300873 vs. ExPASy Swiss-Prot
Match: STC_RICCO (Sugar carrier protein C OS=Ricinus communis GN=STC PE=2 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 7.879e-11
Identity = 26/52 (50.00%), Postives = 40/52 (76.92%), Query Frame = 1
Query:    1 KFGIFLVFGGLVVIMSAFIYFFLPETKQVPIEEIYLLFENHWFWKRIVKEDN 156
            KFG+F+ F   V+IMS F+Y+FLPETK +PIEE+  +++ HW+W R V +++
Sbjct:  454 KFGLFIFFSFFVLIMSIFVYYFLPETKGIPIEEMGQVWKQHWYWSRYVVDED 505          
The following BLAST results are available for this feature:
BLAST of CX300873 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 8
Match NameE-valueIdentityDescription
STP14_ARATH3.418e-1462.00Sugar transport protein 14 OS=Arabidopsis thaliana... [more]
STA_RICCO2.215e-1366.67Sugar carrier protein A OS=Ricinus communis GN=STA... [more]
STP7_ARATH8.418e-1360.00Sugar transport protein 7 OS=Arabidopsis thaliana ... [more]
HEX6_RICCO1.099e-1256.86Hexose carrier protein HEX6 OS=Ricinus communis GN... [more]
STP10_ARATH7.127e-1256.86Sugar transport protein 10 OS=Arabidopsis thaliana... [more]
STP1_ARATH1.216e-1156.00Sugar transport protein 1 OS=Arabidopsis thaliana ... [more]
STP9_ARATH3.537e-1156.86Sugar transport protein 9 OS=Arabidopsis thaliana ... [more]
STC_RICCO7.879e-1150.00Sugar carrier protein C OS=Ricinus communis GN=STC... [more]
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Properties
Property NameValue
Genbank descriptionC08003B08SK PhyRootSw1 Citrus sinensis cDNA clone C08003B08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX300873 ID=CX300873; Name=CX300873; organism=Citrus sinensis; type=EST; length=590bp
AAATTCGGAATTTTCTTGGTCTTTGGTGGCTTGGTTGTCATCATGAGCGC
CTTCATTTACTTCTTTTTGCCAGAAACAAAGCAAGTTCCAATTGAAGAAA
TTTATCTTCTCTTTGAAAATCACTGGTTCTGGAAGAGGATAGTCAAGGAA
GATAATGGCAAGTTTGTTGAACCAGTTAAGTGAAACCTGCAAGTTTTCAG
CTCTTGACCTAAATGATCCATGAAAAACACTATCAATAATGTACAATCCA
GATTTCTTTCTTTTCCCATCTTTGTTTTTAACTACAAATTTATAAATTTC
ATTTAGCTTATATTATTCACTCAAATGAGTAGAATGTCCTGGTAGAGTCC
GTGAATATACTGCAAGAAATAAAAATAAAAGATTCTTCATATTTATTTAT
TTATCAAAAAAAAAAAAAAAAAAACTCGAGGATCAAGAGGGATTTGAACT
TGCGCCTCTTGTCCTTGGTCTTGGACACCACCTTGGCGAGGACTCCCTCA
GGAAAGGAGGCAAAGGAGAAGAGGCTCTTGCGGAAGGCCCGAAGTGAGGG
GGCCTTTTCCCATCCTGGGATTCCAGAGATCTTTTGCAAG
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