CX300863

Overview
NameCX300863
Unique NameCX300863
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length617
Libraries
Library NameType
PhyRootSw1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX300863 vs. ExPASy Swiss-Prot
Match: RS12_CYAPA (40S ribosomal protein S12 OS=Cyanophora paradoxa GN=RPS12 PE=2 SV=1)

HSP 1 Score: 126.716 bits (317), Expect = 9.130e-29
Identity = 60/135 (44.44%), Postives = 89/135 (65.93%), Query Frame = 2
Query:   98 MSDEMDVAPQQTEEVVLDINSALKVVLKKALVFDGLRRGLHESVKALDRGTARLCILSKDCDNGEYVKLVQALCNESGVHLIMADHGTDIGEWVGLAKLNADGTVKKAVRCSVAVVTDFGEETSALNFVLNYVNE 502
            M+DE     +      +D+ +ALK VLKKA+V DGL+RGLHE  KALD+ +A+LC+L+ + +   Y +LV+ALC E G++LI       +GEWVGL K++ +G  +K V CS AV+T FGEE+ A   ++ Y+ +
Sbjct:    1 MADEAIQEGEAAPSGTMDVMTALKEVLKKAMVVDGLKRGLHECAKALDQRSAQLCVLAANVNEPAYTRLVEALCAEHGINLIKVPENKQLGEWVGLCKIDKEGKARKVVGCSCAVITKFGEESEARQVLMEYLKK 135          
BLAST of CX300863 vs. ExPASy Swiss-Prot
Match: RS12_XENLA (40S ribosomal protein S12 OS=Xenopus laevis GN=rps12 PE=2 SV=2)

HSP 1 Score: 122.479 bits (306), Expect = 1.722e-27
Identity = 57/117 (48.72%), Postives = 81/117 (69.23%), Query Frame = 2
Query:  143 VLDINSALKVVLKKALVFDGLRRGLHESVKALDRGTARLCILSKDCDNGEYVKLVQALCNESGVHLIMADHGTDIGEWVGLAKLNADGTVKKAVRCSVAVVTDFGEETSALNFVLNY 493
            V+D+N+AL+ VLK AL+ DGL RG+ E+ KALD+  A LC+L+ +CD   YVKLV+ALC E  ++LI  D    +GEWVGL K++ +G  +K V CS  VV D+G+E+ A + +  Y
Sbjct:   11 VMDVNTALQEVLKTALIHDGLARGIREAAKALDKRQAHLCVLASNCDEPMYVKLVEALCAEPQINLIKVDDNKKLGEWVGLCKIDREGKPRKVVGCSCVVVKDYGKESQAKDVIEEY 127          
BLAST of CX300863 vs. ExPASy Swiss-Prot
Match: RS12_PIG (40S ribosomal protein S12 OS=Sus scrofa GN=RPS12 PE=2 SV=2)

HSP 1 Score: 122.479 bits (306), Expect = 1.722e-27
Identity = 57/117 (48.72%), Postives = 81/117 (69.23%), Query Frame = 2
Query:  143 VLDINSALKVVLKKALVFDGLRRGLHESVKALDRGTARLCILSKDCDNGEYVKLVQALCNESGVHLIMADHGTDIGEWVGLAKLNADGTVKKAVRCSVAVVTDFGEETSALNFVLNY 493
            V+D+N+AL+ VLK AL+ DGL RG+ E+ KALD+  A LC+L+ +CD   YVKLV+ALC E  ++LI  D    +GEWVGL K++ +G  +K V CS  VV D+G+E+ A + +  Y
Sbjct:   11 VMDVNTALQEVLKTALIHDGLARGIREAAKALDKRQAHLCVLASNCDEPMYVKLVEALCAEHQINLIKVDDNKKLGEWVGLCKIDREGKPRKVVGCSCVVVKDYGKESQAKDVIEEY 127          
BLAST of CX300863 vs. ExPASy Swiss-Prot
Match: RS12_HUMAN (40S ribosomal protein S12 OS=Homo sapiens GN=RPS12 PE=1 SV=3)

HSP 1 Score: 122.479 bits (306), Expect = 1.722e-27
Identity = 57/117 (48.72%), Postives = 81/117 (69.23%), Query Frame = 2
Query:  143 VLDINSALKVVLKKALVFDGLRRGLHESVKALDRGTARLCILSKDCDNGEYVKLVQALCNESGVHLIMADHGTDIGEWVGLAKLNADGTVKKAVRCSVAVVTDFGEETSALNFVLNY 493
            V+D+N+AL+ VLK AL+ DGL RG+ E+ KALD+  A LC+L+ +CD   YVKLV+ALC E  ++LI  D    +GEWVGL K++ +G  +K V CS  VV D+G+E+ A + +  Y
Sbjct:   11 VMDVNTALQEVLKTALIHDGLARGIREAAKALDKRQAHLCVLASNCDEPMYVKLVEALCAEHQINLIKVDDNKKLGEWVGLCKIDREGKPRKVVGCSCVVVKDYGKESQAKDVIEEY 127          
BLAST of CX300863 vs. ExPASy Swiss-Prot
Match: RS12_HORVU (40S ribosomal protein S12 OS=Hordeum vulgare GN=RPS12 PE=2 SV=1)

HSP 1 Score: 122.479 bits (306), Expect = 1.722e-27
Identity = 58/131 (44.27%), Postives = 86/131 (65.65%), Query Frame = 2
Query:  116 VAPQQTEEVVL----DINSALKVVLKKALVFDGLRRGLHESVKALDRGTARLCILSKDCDNGEYVKLVQALCNESGVHLIMADHGTDIGEWVGLAKLNADGTVKKAVRCSVAVVTDFGEETSALNFVLNYV 496
            VAP +    +L    D+ +AL++V+KK+   DGL +GL E+ K++++  A+LC+L++DCD  +YVKLV+ALC E  VHL+       +GEW GL K++ +G  +K V CS  VV D+GEE+  LN V  YV
Sbjct:   10 VAPVEAPTPILGEPMDLMTALQLVMKKSSAHDGLVKGLREAAKSIEKHAAQLCVLAEDCDQPDYVKLVKALCAEHNVHLVTVPSAKTLGEWAGLCKIDTEGKARKVVGCSCIVVKDYGEESEGLNIVQQYV 140          
BLAST of CX300863 vs. ExPASy Swiss-Prot
Match: RS12_CHICK (40S ribosomal protein S12 OS=Gallus gallus GN=RPS12 PE=1 SV=2)

HSP 1 Score: 122.479 bits (306), Expect = 1.722e-27
Identity = 57/117 (48.72%), Postives = 81/117 (69.23%), Query Frame = 2
Query:  143 VLDINSALKVVLKKALVFDGLRRGLHESVKALDRGTARLCILSKDCDNGEYVKLVQALCNESGVHLIMADHGTDIGEWVGLAKLNADGTVKKAVRCSVAVVTDFGEETSALNFVLNY 493
            V+D+N+AL+ VLK AL+ DGL RG+ E+ KALD+  A LC+L+ +CD   YVKLV+ALC E  ++LI  D    +GEWVGL K++ +G  +K V CS  VV D+G+E+ A + +  Y
Sbjct:   11 VMDVNTALQEVLKTALIHDGLARGIREAAKALDKRQAHLCVLASNCDEPMYVKLVEALCAEHQINLIKVDDNKKLGEWVGLCKIDREGKPRKVVGCSCVVVKDYGKESQAKDVIEEY 127          
BLAST of CX300863 vs. ExPASy Swiss-Prot
Match: RS12_BOVIN (40S ribosomal protein S12 OS=Bos taurus GN=RPS12 PE=2 SV=1)

HSP 1 Score: 122.479 bits (306), Expect = 1.722e-27
Identity = 57/117 (48.72%), Postives = 81/117 (69.23%), Query Frame = 2
Query:  143 VLDINSALKVVLKKALVFDGLRRGLHESVKALDRGTARLCILSKDCDNGEYVKLVQALCNESGVHLIMADHGTDIGEWVGLAKLNADGTVKKAVRCSVAVVTDFGEETSALNFVLNY 493
            V+D+N+AL+ VLK AL+ DGL RG+ E+ KALD+  A LC+L+ +CD   YVKLV+ALC E  ++LI  D    +GEWVGL K++ +G  +K V CS  VV D+G+E+ A + +  Y
Sbjct:   11 VMDVNTALQEVLKTALIHDGLARGIREAAKALDKRQAHLCVLASNCDEPMYVKLVEALCAEHQINLIKVDDNKKLGEWVGLCKIDREGKPRKVVGCSCVVVKDYGKESQAKDVIEEY 127          
BLAST of CX300863 vs. ExPASy Swiss-Prot
Match: RS12_DROME (40S ribosomal protein S12 OS=Drosophila melanogaster GN=RpS12 PE=2 SV=2)

HSP 1 Score: 120.939 bits (302), Expect = 5.010e-27
Identity = 59/121 (48.76%), Postives = 83/121 (68.60%), Query Frame = 2
Query:  146 LDINSALKVVLKKALVFDGLRRGLHESVKALDRGTARLCILSKDCDNGEYVKLVQALCNESGVHLIMADHGTDIGEWVGLAKLNADGTVKKAVRCSVAVVTDFGEETSALNFVLNYVNENA 508
            +DIN+AL+ VLKK+L+ DGL  G+H++ KALD+  A LCIL++  D   Y KLV ALCNE  + LI  D    +GEW GL K++ +G  +K   CSV V+ DFGEET AL+ V +++ +N+
Sbjct:   19 MDINTALQEVLKKSLIADGLVHGIHQACKALDKRQAVLCILAESFDEPNYKKLVTALCNEHQIPLIRVDSHKKLGEWSGLCKIDKEGKPRKVCGCSVVVIKDFGEETPALDVVKDHLRQNS 139          
BLAST of CX300863 vs. ExPASy Swiss-Prot
Match: RS122_ARATH (40S ribosomal protein S12-2 OS=Arabidopsis thaliana GN=RPS12C PE=2 SV=1)

HSP 1 Score: 120.553 bits (301), Expect = 6.543e-27
Identity = 54/134 (40.30%), Postives = 89/134 (66.42%), Query Frame = 2
Query:  116 VAPQQTEEVVL----DINSALKVVLKKALVFDGLRRGLHESVKALDRGTARLCILSKDCDNGEYVKLVQALCNESGVHLIMADHGTDIGEWVGLAKLNADGTVKKAVRCSVAVVTDFGEETSALNFVLNYVNEN 505
            V P   E  V+    D+++AL++ ++K+  + G+ RGLHES K +++  A+LC+L++DC+  +YVKLV+ALC +  + L+       +GEW GL K++++G  +K V CS  V+ DFGEET+ALN V  +++ N
Sbjct:   11 VVPPVAEAAVIPEDMDVSTALELTVRKSRAYGGVVRGLHESAKLIEKRNAQLCVLAEDCNQPDYVKLVKALCADHSIKLLTVPSAKTLGEWAGLCKIDSEGNARKVVGCSCLVIKDFGEETTALNIVKKHLDSN 144          
BLAST of CX300863 vs. ExPASy Swiss-Prot
Match: RS12_RAT (40S ribosomal protein S12 OS=Rattus norvegicus GN=Rps12 PE=1 SV=2)

HSP 1 Score: 118.627 bits (296), Expect = 2.486e-26
Identity = 56/117 (47.86%), Postives = 80/117 (68.38%), Query Frame = 2
Query:  143 VLDINSALKVVLKKALVFDGLRRGLHESVKALDRGTARLCILSKDCDNGEYVKLVQALCNESGVHLIMADHGTDIGEWVGLAKLNADGTVKKAVRCSVAVVTDFGEETSALNFVLNY 493
            V+D+N+AL+ VLK AL+ DGL RG+ E+ KALD+  A LC+L+ +CD   YVKLV+AL  E  ++LI  D    +GEWVGL K++ +G  +K V CS  VV D+G+E+ A + +  Y
Sbjct:   11 VMDVNTALQEVLKTALIHDGLARGIREAAKALDKRQAHLCVLASNCDEPMYVKLVEALLAEHQINLIKVDDNKKLGEWVGLCKIDREGKPRKVVGCSCVVVKDYGKESQAKDVIEEY 127          
The following BLAST results are available for this feature:
BLAST of CX300863 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 21
Match NameE-valueIdentityDescription
RS12_CYAPA9.130e-2944.4440S ribosomal protein S12 OS=Cyanophora paradoxa G... [more]
RS12_XENLA1.722e-2748.7240S ribosomal protein S12 OS=Xenopus laevis GN=rps... [more]
RS12_PIG1.722e-2748.7240S ribosomal protein S12 OS=Sus scrofa GN=RPS12 P... [more]
RS12_HUMAN1.722e-2748.7240S ribosomal protein S12 OS=Homo sapiens GN=RPS12... [more]
RS12_HORVU1.722e-2744.2740S ribosomal protein S12 OS=Hordeum vulgare GN=RP... [more]
RS12_CHICK1.722e-2748.7240S ribosomal protein S12 OS=Gallus gallus GN=RPS1... [more]
RS12_BOVIN1.722e-2748.7240S ribosomal protein S12 OS=Bos taurus GN=RPS12 P... [more]
RS12_DROME5.010e-2748.7640S ribosomal protein S12 OS=Drosophila melanogast... [more]
RS122_ARATH6.543e-2740.3040S ribosomal protein S12-2 OS=Arabidopsis thalian... [more]
RS12_RAT2.486e-2647.8640S ribosomal protein S12 OS=Rattus norvegicus GN=... [more]

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Properties
Property NameValue
Genbank descriptionC08003A09SK PhyRootSw1 Citrus sinensis cDNA clone C08003A09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX300863 ID=CX300863; Name=CX300863; organism=Citrus sinensis; type=EST; length=617bp
AGCGATTTATTACAAAACGCTGAGCTTGTCAACAAGTGAGGACGCTTAAT
TCAACAAATTTTCAGTACTTCGATCAATCCTACAATCACAAAACAAAATG
TCTGACGAAATGGATGTTGCGCCACAACAAACTGAGGAGGTTGTCTTAGA
CATCAACTCTGCATTAAAGGTTGTCTTAAAGAAGGCCTTAGTCTTCGACG
GTCTTCGCCGTGGTCTTCACGAGTCTGTCAAGGCTCTTGACCGTGGAACT
GCCCGTCTTTGCATCTTATCCAAGGACTGTGACAATGGTGAATACGTCAA
GTTAGTTCAGGCTCTCTGCAACGAATCTGGCGTTCACTTAATCATGGCTG
ATCATGGTACTGATATTGGTGAATGGGTCGGTTTAGCCAAGTTAAACGCC
GACGGTACTGTCAAGAAGGCTGTCCGCTGCTCCGTCGCTGTCGTCACCGA
CTTCGGAGAAGAGACCTCTGCTTTGAACTTCGTCTTGAACTACGTCAACG
AGAACGCTTAAACTGAGTGTCACGAAAAATAGCTGGATTAGCATCAAAAA
AATATATAAGCTTGGAGTTTCTAGTTGGATCTCTTTAGGTCCGCTAGGGT
TGCTTCTGTAAAGAGTA
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