CX300863
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CX300863 vs. ExPASy Swiss-Prot
Match: RS12_CYAPA (40S ribosomal protein S12 OS=Cyanophora paradoxa GN=RPS12 PE=2 SV=1) HSP 1 Score: 126.716 bits (317), Expect = 9.130e-29 Identity = 60/135 (44.44%), Postives = 89/135 (65.93%), Query Frame = 2 Query: 98 MSDEMDVAPQQTEEVVLDINSALKVVLKKALVFDGLRRGLHESVKALDRGTARLCILSKDCDNGEYVKLVQALCNESGVHLIMADHGTDIGEWVGLAKLNADGTVKKAVRCSVAVVTDFGEETSALNFVLNYVNE 502 M+DE + +D+ +ALK VLKKA+V DGL+RGLHE KALD+ +A+LC+L+ + + Y +LV+ALC E G++LI +GEWVGL K++ +G +K V CS AV+T FGEE+ A ++ Y+ + Sbjct: 1 MADEAIQEGEAAPSGTMDVMTALKEVLKKAMVVDGLKRGLHECAKALDQRSAQLCVLAANVNEPAYTRLVEALCAEHGINLIKVPENKQLGEWVGLCKIDKEGKARKVVGCSCAVITKFGEESEARQVLMEYLKK 135
BLAST of CX300863 vs. ExPASy Swiss-Prot
Match: RS12_XENLA (40S ribosomal protein S12 OS=Xenopus laevis GN=rps12 PE=2 SV=2) HSP 1 Score: 122.479 bits (306), Expect = 1.722e-27 Identity = 57/117 (48.72%), Postives = 81/117 (69.23%), Query Frame = 2 Query: 143 VLDINSALKVVLKKALVFDGLRRGLHESVKALDRGTARLCILSKDCDNGEYVKLVQALCNESGVHLIMADHGTDIGEWVGLAKLNADGTVKKAVRCSVAVVTDFGEETSALNFVLNY 493 V+D+N+AL+ VLK AL+ DGL RG+ E+ KALD+ A LC+L+ +CD YVKLV+ALC E ++LI D +GEWVGL K++ +G +K V CS VV D+G+E+ A + + Y Sbjct: 11 VMDVNTALQEVLKTALIHDGLARGIREAAKALDKRQAHLCVLASNCDEPMYVKLVEALCAEPQINLIKVDDNKKLGEWVGLCKIDREGKPRKVVGCSCVVVKDYGKESQAKDVIEEY 127
BLAST of CX300863 vs. ExPASy Swiss-Prot
Match: RS12_PIG (40S ribosomal protein S12 OS=Sus scrofa GN=RPS12 PE=2 SV=2) HSP 1 Score: 122.479 bits (306), Expect = 1.722e-27 Identity = 57/117 (48.72%), Postives = 81/117 (69.23%), Query Frame = 2 Query: 143 VLDINSALKVVLKKALVFDGLRRGLHESVKALDRGTARLCILSKDCDNGEYVKLVQALCNESGVHLIMADHGTDIGEWVGLAKLNADGTVKKAVRCSVAVVTDFGEETSALNFVLNY 493 V+D+N+AL+ VLK AL+ DGL RG+ E+ KALD+ A LC+L+ +CD YVKLV+ALC E ++LI D +GEWVGL K++ +G +K V CS VV D+G+E+ A + + Y Sbjct: 11 VMDVNTALQEVLKTALIHDGLARGIREAAKALDKRQAHLCVLASNCDEPMYVKLVEALCAEHQINLIKVDDNKKLGEWVGLCKIDREGKPRKVVGCSCVVVKDYGKESQAKDVIEEY 127
BLAST of CX300863 vs. ExPASy Swiss-Prot
Match: RS12_HUMAN (40S ribosomal protein S12 OS=Homo sapiens GN=RPS12 PE=1 SV=3) HSP 1 Score: 122.479 bits (306), Expect = 1.722e-27 Identity = 57/117 (48.72%), Postives = 81/117 (69.23%), Query Frame = 2 Query: 143 VLDINSALKVVLKKALVFDGLRRGLHESVKALDRGTARLCILSKDCDNGEYVKLVQALCNESGVHLIMADHGTDIGEWVGLAKLNADGTVKKAVRCSVAVVTDFGEETSALNFVLNY 493 V+D+N+AL+ VLK AL+ DGL RG+ E+ KALD+ A LC+L+ +CD YVKLV+ALC E ++LI D +GEWVGL K++ +G +K V CS VV D+G+E+ A + + Y Sbjct: 11 VMDVNTALQEVLKTALIHDGLARGIREAAKALDKRQAHLCVLASNCDEPMYVKLVEALCAEHQINLIKVDDNKKLGEWVGLCKIDREGKPRKVVGCSCVVVKDYGKESQAKDVIEEY 127
BLAST of CX300863 vs. ExPASy Swiss-Prot
Match: RS12_HORVU (40S ribosomal protein S12 OS=Hordeum vulgare GN=RPS12 PE=2 SV=1) HSP 1 Score: 122.479 bits (306), Expect = 1.722e-27 Identity = 58/131 (44.27%), Postives = 86/131 (65.65%), Query Frame = 2 Query: 116 VAPQQTEEVVL----DINSALKVVLKKALVFDGLRRGLHESVKALDRGTARLCILSKDCDNGEYVKLVQALCNESGVHLIMADHGTDIGEWVGLAKLNADGTVKKAVRCSVAVVTDFGEETSALNFVLNYV 496 VAP + +L D+ +AL++V+KK+ DGL +GL E+ K++++ A+LC+L++DCD +YVKLV+ALC E VHL+ +GEW GL K++ +G +K V CS VV D+GEE+ LN V YV Sbjct: 10 VAPVEAPTPILGEPMDLMTALQLVMKKSSAHDGLVKGLREAAKSIEKHAAQLCVLAEDCDQPDYVKLVKALCAEHNVHLVTVPSAKTLGEWAGLCKIDTEGKARKVVGCSCIVVKDYGEESEGLNIVQQYV 140
BLAST of CX300863 vs. ExPASy Swiss-Prot
Match: RS12_CHICK (40S ribosomal protein S12 OS=Gallus gallus GN=RPS12 PE=1 SV=2) HSP 1 Score: 122.479 bits (306), Expect = 1.722e-27 Identity = 57/117 (48.72%), Postives = 81/117 (69.23%), Query Frame = 2 Query: 143 VLDINSALKVVLKKALVFDGLRRGLHESVKALDRGTARLCILSKDCDNGEYVKLVQALCNESGVHLIMADHGTDIGEWVGLAKLNADGTVKKAVRCSVAVVTDFGEETSALNFVLNY 493 V+D+N+AL+ VLK AL+ DGL RG+ E+ KALD+ A LC+L+ +CD YVKLV+ALC E ++LI D +GEWVGL K++ +G +K V CS VV D+G+E+ A + + Y Sbjct: 11 VMDVNTALQEVLKTALIHDGLARGIREAAKALDKRQAHLCVLASNCDEPMYVKLVEALCAEHQINLIKVDDNKKLGEWVGLCKIDREGKPRKVVGCSCVVVKDYGKESQAKDVIEEY 127
BLAST of CX300863 vs. ExPASy Swiss-Prot
Match: RS12_BOVIN (40S ribosomal protein S12 OS=Bos taurus GN=RPS12 PE=2 SV=1) HSP 1 Score: 122.479 bits (306), Expect = 1.722e-27 Identity = 57/117 (48.72%), Postives = 81/117 (69.23%), Query Frame = 2 Query: 143 VLDINSALKVVLKKALVFDGLRRGLHESVKALDRGTARLCILSKDCDNGEYVKLVQALCNESGVHLIMADHGTDIGEWVGLAKLNADGTVKKAVRCSVAVVTDFGEETSALNFVLNY 493 V+D+N+AL+ VLK AL+ DGL RG+ E+ KALD+ A LC+L+ +CD YVKLV+ALC E ++LI D +GEWVGL K++ +G +K V CS VV D+G+E+ A + + Y Sbjct: 11 VMDVNTALQEVLKTALIHDGLARGIREAAKALDKRQAHLCVLASNCDEPMYVKLVEALCAEHQINLIKVDDNKKLGEWVGLCKIDREGKPRKVVGCSCVVVKDYGKESQAKDVIEEY 127
BLAST of CX300863 vs. ExPASy Swiss-Prot
Match: RS12_DROME (40S ribosomal protein S12 OS=Drosophila melanogaster GN=RpS12 PE=2 SV=2) HSP 1 Score: 120.939 bits (302), Expect = 5.010e-27 Identity = 59/121 (48.76%), Postives = 83/121 (68.60%), Query Frame = 2 Query: 146 LDINSALKVVLKKALVFDGLRRGLHESVKALDRGTARLCILSKDCDNGEYVKLVQALCNESGVHLIMADHGTDIGEWVGLAKLNADGTVKKAVRCSVAVVTDFGEETSALNFVLNYVNENA 508 +DIN+AL+ VLKK+L+ DGL G+H++ KALD+ A LCIL++ D Y KLV ALCNE + LI D +GEW GL K++ +G +K CSV V+ DFGEET AL+ V +++ +N+ Sbjct: 19 MDINTALQEVLKKSLIADGLVHGIHQACKALDKRQAVLCILAESFDEPNYKKLVTALCNEHQIPLIRVDSHKKLGEWSGLCKIDKEGKPRKVCGCSVVVIKDFGEETPALDVVKDHLRQNS 139
BLAST of CX300863 vs. ExPASy Swiss-Prot
Match: RS122_ARATH (40S ribosomal protein S12-2 OS=Arabidopsis thaliana GN=RPS12C PE=2 SV=1) HSP 1 Score: 120.553 bits (301), Expect = 6.543e-27 Identity = 54/134 (40.30%), Postives = 89/134 (66.42%), Query Frame = 2 Query: 116 VAPQQTEEVVL----DINSALKVVLKKALVFDGLRRGLHESVKALDRGTARLCILSKDCDNGEYVKLVQALCNESGVHLIMADHGTDIGEWVGLAKLNADGTVKKAVRCSVAVVTDFGEETSALNFVLNYVNEN 505 V P E V+ D+++AL++ ++K+ + G+ RGLHES K +++ A+LC+L++DC+ +YVKLV+ALC + + L+ +GEW GL K++++G +K V CS V+ DFGEET+ALN V +++ N Sbjct: 11 VVPPVAEAAVIPEDMDVSTALELTVRKSRAYGGVVRGLHESAKLIEKRNAQLCVLAEDCNQPDYVKLVKALCADHSIKLLTVPSAKTLGEWAGLCKIDSEGNARKVVGCSCLVIKDFGEETTALNIVKKHLDSN 144
BLAST of CX300863 vs. ExPASy Swiss-Prot
Match: RS12_RAT (40S ribosomal protein S12 OS=Rattus norvegicus GN=Rps12 PE=1 SV=2) HSP 1 Score: 118.627 bits (296), Expect = 2.486e-26 Identity = 56/117 (47.86%), Postives = 80/117 (68.38%), Query Frame = 2 Query: 143 VLDINSALKVVLKKALVFDGLRRGLHESVKALDRGTARLCILSKDCDNGEYVKLVQALCNESGVHLIMADHGTDIGEWVGLAKLNADGTVKKAVRCSVAVVTDFGEETSALNFVLNY 493 V+D+N+AL+ VLK AL+ DGL RG+ E+ KALD+ A LC+L+ +CD YVKLV+AL E ++LI D +GEWVGL K++ +G +K V CS VV D+G+E+ A + + Y Sbjct: 11 VMDVNTALQEVLKTALIHDGLARGIREAAKALDKRQAHLCVLASNCDEPMYVKLVEALLAEHQINLIKVDDNKKLGEWVGLCKIDREGKPRKVVGCSCVVVKDYGKESQAKDVIEEY 127 The following BLAST results are available for this feature:
BLAST of CX300863 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 21
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Sequences
The
following sequences are available for this feature:
EST sequence >CX300863 ID=CX300863; Name=CX300863; organism=Citrus sinensis; type=EST; length=617bpback to top |