CX300858

Overview
NameCX300858
Unique NameCX300858
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length576
Libraries
Library NameType
PhyRootSw1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig3245 contig Csv1_Contig3245:552..1127. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX300858 vs. ExPASy Swiss-Prot
Match: FOX2_NEUCR (Peroxisomal hydratase-dehydrogenase-epimerase OS=Neurospora crassa GN=fox-2 PE=1 SV=1)

HSP 1 Score: 126.331 bits (316), Expect = 1.030e-28
Identity = 70/149 (46.98%), Postives = 85/149 (57.05%), Query Frame = 3
Query:    3 MTAFLRGAGGFSNSSQPFSYSKYQTIPVSVVKIPKSQPFAVFEDYTQPSQALVYRLSGDYNPLHSDPMVAKAAGFSRPILHGLCTMGFAVRAIIKFICRGDPNMVKNIFSRFLLHVYPGETLVTEMWLQGLRVIYQVKVKERNRSVLSG 449
            MT FLRG GGF    +P      +    +  K P   P AV E  T   QA +YRLSGDYNPLH DP  AK  GF  PILHGLC+ G A +A+ +          KNI  RF   V PG+TLVTEMW +G +V++Q KVKE  +  +SG
Sbjct:  749 MTVFLRGCGGFGGQKKPAD----RGASTAANKPPARSPDAVVEVQTTEEQAAIYRLSGDYNPLHVDPAFAKVGGFKVPILHGLCSFGIAGKAVYE-----KYGKFKNIKVRFAGTVNPGQTLVTEMWKEGNKVVFQTKVKETGKLAISG 888          
BLAST of CX300858 vs. ExPASy Swiss-Prot
Match: DHB4_HUMAN (Peroxisomal multifunctional enzyme type 2 OS=Homo sapiens GN=HSD17B4 PE=1 SV=3)

HSP 1 Score: 124.405 bits (311), Expect = 3.914e-28
Identity = 71/152 (46.71%), Postives = 91/152 (59.87%), Query Frame = 3
Query:   12 FLRGAGGFSNSSQPFSYSKYQTIPVSV-VKIPKSQPFAVFEDYTQPSQALVYRLSGDYNPLHSDPMVAKAAGFSRPILHGLCTMGFAVRAIIKFICRGDPNMVKNIFSRFLLHVYPGETLVTEMWLQGLRVIYQVKVKERNRSVLS-GFVDV 461
            FL G+GGF          K  +  V V V IP   P AV  D T  +QA +YRLSGD+NPLH DP  A  AGF +PILHGLCT GF+ R +++     D +  K I +RF   VYPG+TL TEMW +G R+ +Q KV+E    V+S  +VD+
Sbjct:  462 FLVGSGGFGG--------KRTSDKVKVAVAIPNRPPDAVLTDTTSLNQAALYRLSGDWNPLHIDPNFASLAGFDKPILHGLCTFGFSARRVLQQFADNDVSRFKAIKARFAKPVYPGQTLQTEMWKEGNRIHFQTKVQETGDIVISNAYVDL 605          
BLAST of CX300858 vs. ExPASy Swiss-Prot
Match: DHB4_MOUSE (Peroxisomal multifunctional enzyme type 2 OS=Mus musculus GN=Hsd17b4 PE=1 SV=3)

HSP 1 Score: 121.324 bits (303), Expect = 3.313e-27
Identity = 66/153 (43.14%), Postives = 87/153 (56.86%), Query Frame = 3
Query:    6 TAFLRGAGGFSNSSQPFSYSKYQTIPVSVVKIPKSQPFAVFEDYTQPSQALVYRLSGDYNPLHSDPMVAKAAGFSRPILHGLCTMGFAVRAIIKFICRGDPNMVKNIFSRFLLHVYPGETLVTEMWLQGLRVIYQVKVKERNRSVLS-GFVDV 461
            + F+ G+GGF                 + V +P   P AV  D T  +QA +YRLSGD+NPLH DP  A  AGF +PILHGLCT GF+ R +++     D +  K I  RF   VYPG+TL TEMW +G R+ +Q KV E    V+S  +VD+
Sbjct:  459 SVFVVGSGGFGGKRTSEKLK-------AAVAVPNRPPDAVLRDATSLNQAALYRLSGDWNPLHIDPDFASVAGFEKPILHGLCTFGFSARHVLQQFADNDVSRFKAIKVRFAKPVYPGQTLQTEMWKEGNRIHFQTKVHETGDVVISNAYVDL 604          
BLAST of CX300858 vs. ExPASy Swiss-Prot
Match: DHB4_RAT (Peroxisomal multifunctional enzyme type 2 OS=Rattus norvegicus GN=Hsd17b4 PE=1 SV=3)

HSP 1 Score: 120.939 bits (302), Expect = 4.327e-27
Identity = 66/153 (43.14%), Postives = 87/153 (56.86%), Query Frame = 3
Query:    6 TAFLRGAGGFSNSSQPFSYSKYQTIPVSVVKIPKSQPFAVFEDYTQPSQALVYRLSGDYNPLHSDPMVAKAAGFSRPILHGLCTMGFAVRAIIKFICRGDPNMVKNIFSRFLLHVYPGETLVTEMWLQGLRVIYQVKVKERNRSVLS-GFVDV 461
            + F+ G+GGF                 + V +P   P AV  D T  +QA +YRLSGD NPLH DP  A  AGF +PILHGLCT GF+ R +++     D +  K I  RF   VYPG+TL TEMW +G R+ +Q KV+E    V+S  +VD+
Sbjct:  459 SVFVVGSGGFGGKRTSEKLK-------AAVAVPSRPPDAVLRDTTSLNQAALYRLSGDSNPLHIDPSFASIAGFEKPILHGLCTFGFSARHVLQQFADNDVSRFKAIKVRFAKPVYPGQTLQTEMWKEGNRIHFQTKVQETGDIVISNAYVDL 604          
BLAST of CX300858 vs. ExPASy Swiss-Prot
Match: MFEB_DICDI (Probable 3-alpha,7-alpha,12-alpha-trihydroxy-5-beta-cholest-24-enoyl-CoA hydratase OS=Dictyostelium discoideum GN=mfeB PE=2 SV=1)

HSP 1 Score: 117.857 bits (294), Expect = 3.663e-26
Identity = 64/153 (41.83%), Postives = 88/153 (57.52%), Query Frame = 3
Query:   12 FLRGAGGFSNSSQPFSYSKYQTIPVSVVKIPKSQ-PFAVFEDYTQPSQALVYRLSG-DYNPLHSDPMVAKAAGFSRPILHGLCTMGFAVRAIIKFICRGDPNMVKNIFSRFLLHVYPGETLVTEMW-LQGLRVIYQVKVKERNRSVLSGFVDV 461
            F+RG GGF     P             ++IPK + P A+ +  T   QA++YRL+G D NPLH DP ++K  GF  PILHGLCT G A R +++  C  DP+ +K+I +RF  HVYPGET+ TEMW +    +++Q K       VLS  V +
Sbjct:  142 FIRGIGGFGGDRGPNE---------KPIQIPKDRAPDAISKQATSEDQAVIYRLAGGDLNPLHIDPEMSKIGGFEVPILHGLCTYGIASRGVLEHFCDNDPSRLKSIKTRFTKHVYPGETIETEMWKINPTTILFQSKTNRDGSYVLSSGVAI 285          
BLAST of CX300858 vs. ExPASy Swiss-Prot
Match: FOX2_YEAST (Peroxisomal hydratase-dehydrogenase-epimerase OS=Saccharomyces cerevisiae GN=FOX2 PE=1 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 2.015e-16
Identity = 45/102 (44.12%), Postives = 60/102 (58.82%), Query Frame = 3
Query:  138 TQPSQALVYRLSGDYNPLHSDPMVAKAAGFSRPILHGLCTMGFAVRAIIKFICRGDPNMVKNIFSRFLLHVYPGETLVTEMWLQGLRVIYQVKVKERNRSVL 443
            T   QA +YRLSGD+NPLH DP +AKA  F  PILHGLCT+G + +A+ +          + +  RF   V+PG+TL  + W QG  V++Q     RN  VL
Sbjct:  790 TNKDQAALYRLSGDFNPLHIDPTLAKAVKFPTPILHGLCTLGISAKALFEHY-----GPYEELKVRFTNVVFPGDTLKVKAWKQGSVVVFQTIDTTRNVIVL 886          
BLAST of CX300858 vs. ExPASy Swiss-Prot
Match: FOX2_CANTR (Peroxisomal hydratase-dehydrogenase-epimerase OS=Candida tropicalis PE=1 SV=2)

HSP 1 Score: 75.485 bits (184), Expect = 2.085e-13
Identity = 46/111 (41.44%), Postives = 60/111 (54.05%), Query Frame = 3
Query:  102 PKSQPFAVFEDYTQPSQALVYRLSGDYNPLHSDPMVAKAAGFSRPILHGLCTMGFAVRAII-KFICRGDPNMVKNIFSRFLLHVYPGETLVTEMWLQG-LRVIYQVKVKER 428
            PK  P    +       A +YRLSGD NPLH DP  AK A F +PILHG+CT G + +A+I KF       M   I +RF   V+PGETL    W +    +++Q  V +R
Sbjct:  783 PKRAPDYQVDVPVSEDLAALYRLSGDRNPLHIDPNFAKGAKFPKPILHGMCTYGLSAKALIDKF------GMFNEIKARFTGIVFPGETLRVLAWKESDDTIVFQTHVVDR 887          
The following BLAST results are available for this feature:
BLAST of CX300858 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 7
Match NameE-valueIdentityDescription
FOX2_NEUCR1.030e-2846.98Peroxisomal hydratase-dehydrogenase-epimerase OS=N... [more]
DHB4_HUMAN3.914e-2846.71Peroxisomal multifunctional enzyme type 2 OS=Homo ... [more]
DHB4_MOUSE3.313e-2743.14Peroxisomal multifunctional enzyme type 2 OS=Mus m... [more]
DHB4_RAT4.327e-2743.14Peroxisomal multifunctional enzyme type 2 OS=Rattu... [more]
MFEB_DICDI3.663e-2641.83Probable 3-alpha,7-alpha,12-alpha-trihydroxy-5-bet... [more]
FOX2_YEAST2.015e-1644.12Peroxisomal hydratase-dehydrogenase-epimerase OS=S... [more]
FOX2_CANTR2.085e-1341.44Peroxisomal hydratase-dehydrogenase-epimerase OS=C... [more]
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Properties
Property NameValue
Genbank descriptionC08003A04SK PhyRootSw1 Citrus sinensis cDNA clone C08003A04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX300858 ID=CX300858; Name=CX300858; organism=Citrus sinensis; type=EST; length=576bp
GGATGACTGCCTTTCTGCGGGGTGCTGGCGGCTTTTCAAATTCATCTCAA
CCATTTTCCTACTCAAAATATCAAACTATCCCTGTTTCAGTTGTGAAAAT
CCCTAAAAGTCAACCTTTTGCAGTATTTGAGGATTATACCCAACCATCTC
AGGCATTGGTGTATAGGCTATCTGGTGATTATAATCCTCTTCATTCAGAT
CCTATGGTTGCAAAAGCTGCTGGTTTCTCTCGGCCAATATTGCATGGGCT
GTGTACAATGGGGTTTGCAGTTAGGGCAATCATCAAATTTATTTGTAGAG
GGGATCCAAACATGGTCAAGAATATATTCAGCCGATTCCTTTTACATGTG
TACCCTGGTGAAACTTTGGTCACGGAAATGTGGCTTCAAGGCTTGAGGGT
CATTTATCAGGTAAAGGTAAAAGAGCGAAATCGAAGTGTGCTCTCTGGCT
TTGTAGATGTTCATCGTTTAGCTTCATCGCTGTAATTTCATTTGTTGTTG
TATTACATGTTTTTACTCTCTCTTTTCATATGGTCTAAATAATTGATGCT
AGTTATTGTTGGAAGAGAACAGTATA
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