CX300853

Overview
NameCX300853
Unique NameCX300853
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length532
Libraries
Library NameType
PhyRootSw1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1498 contig Csv1_Contig1498:274..805. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX300853 vs. ExPASy Swiss-Prot
Match: NDKB_FLABI (Nucleoside diphosphate kinase B OS=Flaveria bidentis PE=2 SV=1)

HSP 1 Score: 163.696 bits (413), Expect = 4.916e-40
Identity = 74/99 (74.75%), Postives = 84/99 (84.85%), Query Frame = 3
Query:    6 AEFGTRPFFGSLIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSAPGTIRGDLAIVTGRNIIHGSDSVESAQKEIALWFPDGPINWQSSLHPWIYE 302
            A+   +PFF  L+EYI SGPVVAM+WEG+ VV TGR IIGATNPA+SAPGTIRGD AI  GRN+IHGSD+VESA+KEIALWFP+G  NW SSLHPWIYE
Sbjct:   50 ADLSAKPFFNGLVEYIISGPVVAMVWEGKNVVTTGRKIIGATNPAESAPGTIRGDFAIDIGRNVIHGSDAVESAKKEIALWFPEGVANWSSSLHPWIYE 148          
BLAST of CX300853 vs. ExPASy Swiss-Prot
Match: NDK1_ARATH (Nucleoside diphosphate kinase 1 OS=Arabidopsis thaliana GN=NDPK1 PE=1 SV=1)

HSP 1 Score: 163.696 bits (413), Expect = 4.916e-40
Identity = 73/98 (74.49%), Postives = 84/98 (85.71%), Query Frame = 3
Query:    9 EFGTRPFFGSLIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSAPGTIRGDLAIVTGRNIIHGSDSVESAQKEIALWFPDGPINWQSSLHPWIYE 302
            +  ++ FF  L++YI SGPVVAMIWEG+ VV TGR IIGATNPA S PGTIRGD AI  GRN+IHGSDSVESA+KEIALWFPDGP+NWQSS+HPW+YE
Sbjct:   51 DLSSKSFFSGLVDYIVSGPVVAMIWEGKNVVLTGRKIIGATNPAASEPGTIRGDFAIDIGRNVIHGSDSVESARKEIALWFPDGPVNWQSSVHPWVYE 148          
BLAST of CX300853 vs. ExPASy Swiss-Prot
Match: NDK1_MESCR (Nucleoside diphosphate kinase 1 OS=Mesembryanthemum crystallinum GN=NDKP1 PE=2 SV=1)

HSP 1 Score: 160.614 bits (405), Expect = 4.162e-39
Identity = 73/99 (73.74%), Postives = 82/99 (82.83%), Query Frame = 3
Query:    6 AEFGTRPFFGSLIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSAPGTIRGDLAIVTGRNIIHGSDSVESAQKEIALWFPDGPINWQSSLHPWIYE 302
            A+   +PFF  L+EYI SGPVVAM+WEG+GVV TGR IIGATNP  S PGTIRGD AI  GRN+IHGSD+VESA KEIALWFP+G +NWQSSLH WIYE
Sbjct:   50 ADLSAKPFFNGLVEYIVSGPVVAMVWEGKGVVLTGRKIIGATNPLASEPGTIRGDFAIDIGRNVIHGSDAVESATKEIALWFPEGVVNWQSSLHSWIYE 148          
BLAST of CX300853 vs. ExPASy Swiss-Prot
Match: NDK_HELAN (Nucleoside diphosphate kinase OS=Helianthus annuus PE=2 SV=1)

HSP 1 Score: 160.229 bits (404), Expect = 5.435e-39
Identity = 72/99 (72.73%), Postives = 82/99 (82.83%), Query Frame = 3
Query:    6 AEFGTRPFFGSLIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSAPGTIRGDLAIVTGRNIIHGSDSVESAQKEIALWFPDGPINWQSSLHPWIYE 302
            A+   +PFF  L+EYI SGPVVAM+WEG+ VV TGR IIGATNPA+S PGTIRGD AI  GRN+IHGSD+VESA+KEI LWFP+G  NW SSLHPWIYE
Sbjct:   50 ADLSAKPFFNGLVEYIISGPVVAMVWEGKNVVTTGRKIIGATNPAESPPGTIRGDFAIDIGRNVIHGSDAVESAKKEIGLWFPEGVANWSSSLHPWIYE 148          
BLAST of CX300853 vs. ExPASy Swiss-Prot
Match: NDKA_FLABI (Nucleoside diphosphate kinase A OS=Flaveria bidentis PE=2 SV=1)

HSP 1 Score: 160.229 bits (404), Expect = 5.435e-39
Identity = 72/99 (72.73%), Postives = 83/99 (83.84%), Query Frame = 3
Query:    6 AEFGTRPFFGSLIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSAPGTIRGDLAIVTGRNIIHGSDSVESAQKEIALWFPDGPINWQSSLHPWIYE 302
            A+  ++PFF  L+EYI SGPVVAM+WEG+ VV TGR IIGATNPA+SAPGTIRGD AI  GRN+IHGSD+VESA+K I LWFP+G  NW SSLHPWIYE
Sbjct:   50 ADLSSKPFFNGLVEYIVSGPVVAMVWEGKNVVTTGREIIGATNPAESAPGTIRGDFAIDIGRNVIHGSDAVESARKVIGLWFPEGVANWSSSLHPWIYE 148          
BLAST of CX300853 vs. ExPASy Swiss-Prot
Match: NDK1_PEA (Nucleoside diphosphate kinase 1 OS=Pisum sativum GN=NDPK1 PE=2 SV=1)

HSP 1 Score: 159.844 bits (403), Expect = 7.099e-39
Identity = 73/99 (73.74%), Postives = 82/99 (82.83%), Query Frame = 3
Query:    6 AEFGTRPFFGSLIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSAPGTIRGDLAIVTGRNIIHGSDSVESAQKEIALWFPDGPINWQSSLHPWIYE 302
            A+   +PFF  L++YI SGPVVAMIWEG+ VV TGR IIGATNPAQS PGTIRGD AI  GRN+IHGSD+VESA KEIALWFP+G  NW+SSLH WIYE
Sbjct:   51 ADLSAKPFFSGLVDYIISGPVVAMIWEGKNVVTTGRKIIGATNPAQSEPGTIRGDFAIDIGRNVIHGSDAVESANKEIALWFPEGAANWESSLHSWIYE 149          
BLAST of CX300853 vs. ExPASy Swiss-Prot
Match: NDK1_SPIOL (Nucleoside diphosphate kinase 1 OS=Spinacia oleracea GN=NDPK1 PE=2 SV=1)

HSP 1 Score: 158.688 bits (400), Expect = 1.581e-38
Identity = 71/99 (71.72%), Postives = 82/99 (82.83%), Query Frame = 3
Query:    6 AEFGTRPFFGSLIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSAPGTIRGDLAIVTGRNIIHGSDSVESAQKEIALWFPDGPINWQSSLHPWIYE 302
            A+   +PFF  L+EYI SGPVVAM+WEG+GVV TGR +IGATNP  S PGTIRGD AI  GRN+IHGSD+V+SA KEIALWFPDG ++WQSSLH WIYE
Sbjct:   50 ADLSAKPFFNGLVEYIVSGPVVAMVWEGKGVVATGRKLIGATNPLASEPGTIRGDFAIDIGRNVIHGSDAVDSATKEIALWFPDGVVHWQSSLHSWIYE 148          
BLAST of CX300853 vs. ExPASy Swiss-Prot
Match: NDK1_TOBAC (Nucleoside diphosphate kinase 1 OS=Nicotiana tabacum PE=2 SV=1)

HSP 1 Score: 157.918 bits (398), Expect = 2.698e-38
Identity = 71/99 (71.72%), Postives = 83/99 (83.84%), Query Frame = 3
Query:    6 AEFGTRPFFGSLIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSAPGTIRGDLAIVTGRNIIHGSDSVESAQKEIALWFPDGPINWQSSLHPWIYE 302
            ++   +PFF  L++YI SGPVVAM+WEG+GVV TGR IIGATNP +SAPGTIRGD AI  GRN+IHGSD+VESA+KEIALWFP+G   WQSSLH WIYE
Sbjct:   50 SDLSAKPFFNGLVDYIISGPVVAMVWEGKGVVTTGRKIIGATNPLESAPGTIRGDYAIDIGRNVIHGSDAVESARKEIALWFPEGVAEWQSSLHSWIYE 148          
BLAST of CX300853 vs. ExPASy Swiss-Prot
Match: NDK_CAPAN (Nucleoside diphosphate kinase OS=Capsicum annuum PE=2 SV=1)

HSP 1 Score: 157.532 bits (397), Expect = 3.523e-38
Identity = 71/99 (71.72%), Postives = 83/99 (83.84%), Query Frame = 3
Query:    6 AEFGTRPFFGSLIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSAPGTIRGDLAIVTGRNIIHGSDSVESAQKEIALWFPDGPINWQSSLHPWIYE 302
            A+   +PFF  L+EYI SGPVV+M+WEG+GV+ TGR IIGATNP +SAPGTIRGD AI  GRN+IHGSD+VESA+KEIALWFP+G   WQSSLH WIYE
Sbjct:   50 ADLSAKPFFNGLVEYIVSGPVVSMVWEGKGVLTTGRKIIGATNPLESAPGTIRGDYAIDIGRNVIHGSDAVESARKEIALWFPEGVAEWQSSLHCWIYE 148          
BLAST of CX300853 vs. ExPASy Swiss-Prot
Match: NDK1_SOYBN (Nucleoside diphosphate kinase 1 OS=Glycine max PE=2 SV=1)

HSP 1 Score: 156.762 bits (395), Expect = 6.009e-38
Identity = 73/99 (73.74%), Postives = 81/99 (81.82%), Query Frame = 3
Query:    6 AEFGTRPFFGSLIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSAPGTIRGDLAIVTGRNIIHGSDSVESAQKEIALWFPDGPINWQSSLHPWIYE 302
            A+   +PFF  L++YI SGPVVAMIWEG+ VV TGR IIGATNPAQS PGTIRGD AI  GRN+IHGSD+VESA KEIALWFP+GP N QSS H WIYE
Sbjct:   51 ADLSAKPFFSGLVDYIISGPVVAMIWEGKNVVTTGRKIIGATNPAQSEPGTIRGDFAIDIGRNVIHGSDAVESANKEIALWFPEGPANCQSSQHSWIYE 149          
The following BLAST results are available for this feature:
BLAST of CX300853 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
NDKB_FLABI4.916e-4074.75Nucleoside diphosphate kinase B OS=Flaveria bident... [more]
NDK1_ARATH4.916e-4074.49Nucleoside diphosphate kinase 1 OS=Arabidopsis tha... [more]
NDK1_MESCR4.162e-3973.74Nucleoside diphosphate kinase 1 OS=Mesembryanthemu... [more]
NDK_HELAN5.435e-3972.73Nucleoside diphosphate kinase OS=Helianthus annuus... [more]
NDKA_FLABI5.435e-3972.73Nucleoside diphosphate kinase A OS=Flaveria bident... [more]
NDK1_PEA7.099e-3973.74Nucleoside diphosphate kinase 1 OS=Pisum sativum G... [more]
NDK1_SPIOL1.581e-3871.72Nucleoside diphosphate kinase 1 OS=Spinacia olerac... [more]
NDK1_TOBAC2.698e-3871.72Nucleoside diphosphate kinase 1 OS=Nicotiana tabac... [more]
NDK_CAPAN3.523e-3871.72Nucleoside diphosphate kinase OS=Capsicum annuum P... [more]
NDK1_SOYBN6.009e-3873.74Nucleoside diphosphate kinase 1 OS=Glycine max PE=... [more]

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Properties
Property NameValue
Genbank descriptionC08002H11SK PhyRootSw1 Citrus sinensis cDNA clone C08002H11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX300853 ID=CX300853; Name=CX300853; organism=Citrus sinensis; type=EST; length=532bp
CTCGTGCCGAATTCGGCACGAGGCCTTTCTTTGGTTCTCTGATTGAGTAC
ATTACCTCTGGTCCTGTTGTTGCTATGATTTGGGAGGGTGAAGGTGTTGT
TAAGACTGGCCGCACTATTATTGGAGCCACCAACCCTGCGCAGTCTGCTC
CTGGAACCATCCGTGGTGATTTGGCTATCGTGACGGGCAGGAATATTATC
CATGGAAGTGACTCAGTTGAGAGTGCCCAGAAAGAAATCGCCTTGTGGTT
CCCTGATGGCCCTATTAACTGGCAGAGCAGCCTTCACCCTTGGATCTATG
AGTAAACTAATGTTTGGTTGAGGAGCCTAATTGTTCCTGCAGTTAGACTT
ATCCCTATCCCTATCCCTATTTCCTTATTTATGGTTACTCCTTGTTGGTG
AACTGTTATGAAGTATTGAGTTAAATTGAGACCAATCCTGGTTATGTTGG
CTGCTTTTATTCTTGTGGTTGCCATATACAATATTTAAGCTTTTTTGTTG
ACTGTATTATGAATTGAGTTTGTTAATGGTTA
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