CX300844

Overview
NameCX300844
Unique NameCX300844
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length584
Libraries
Library NameType
PhyRootSw1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CX300844_ssr56 microsatellite CX300844_ssr56:56..65. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig2523 contig Csv1_Contig2523:145..728. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CX300844 vs. ExPASy Swiss-Prot
Match: SYP22_ARATH (Syntaxin-22 OS=Arabidopsis thaliana GN=SYP22 PE=1 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 2.233e-18
Identity = 43/55 (78.18%), Postives = 53/55 (96.36%), Query Frame = 3 
Query:  102 VNEVFKDLAVLVHEQGTIIDDIGSHIENSQVATAQGKSQLVKAAKTQRSNSSLTC 266
            VNE+FKDLAVLV++QG +IDDIG+HI+NS+ AT+QGKSQLV+AAKTQ+SNSSLTC
Sbjct:  195 VNEIFKDLAVLVNDQGVMIDDIGTHIDNSRAATSQGKSQLVQAAKTQKSNSSLTC 249
[Close]
BLAST of CX300844 vs. ExPASy Swiss-Prot
Match: SYP21_ARATH (Syntaxin-21 OS=Arabidopsis thaliana GN=SYP21 PE=1 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 4.819e-13
Identity = 36/55 (65.45%), Postives = 44/55 (80.00%), Query Frame = 3 
Query:  102 VNEVFKDLAVLVHEQGTIIDDIGSHIENSQVATAQGKSQLVKAAKTQRSNSSLTC 266
            VN +FKDLA++V+ QG I+DDI S+++NS  AT Q   QL KAAKTQRSNSSLTC
Sbjct:  206 VNGMFKDLALMVNHQGNIVDDISSNLDNSHAATTQATVQLRKAAKTQRSNSSLTC 260
[Close]
BLAST of CX300844 vs. ExPASy Swiss-Prot
Match: SYP23_ARATH (Syntaxin-23 OS=Arabidopsis thaliana GN=SYP23 PE=2 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 3.454e-11
Identity = 31/42 (73.81%), Postives = 38/42 (90.48%), Query Frame = 3 
Query:  102 VNEVFKDLAVLVHEQGTIIDDIGSHIENSQVATAQGKSQLVK 227
            V+E+FKDLAVLVH+QG +IDDIG+HI+NS  ATAQGKS LV+
Sbjct:  204 VHEIFKDLAVLVHDQGNMIDDIGTHIDNSYAATAQGKSHLVR 245
The following BLAST results are available for this feature:
BLAST of CX300844 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 3
Match NameE-valueIdentityDescription
SYP22_ARATH2.233e-1878.18Syntaxin-22 OS=Arabidopsis thaliana GN=SYP22 PE=1 ... [more]
SYP21_ARATH4.819e-1365.45Syntaxin-21 OS=Arabidopsis thaliana GN=SYP21 PE=1 ... [more]
SYP23_ARATH3.454e-1173.81Syntaxin-23 OS=Arabidopsis thaliana GN=SYP23 PE=2 ... [more]
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Properties
Property NameValue
Genbank descriptionC08002H02SK PhyRootSw1 Citrus sinensis cDNA clone C08002H02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX300844 ID=CX300844; Name=CX300844; organism=Citrus sinensis; type=EST; length=584bp
GCACGAGGGTTGTGCTATTGGACAATGAGATTGCCTTCAATGAGGCTATA
ATTGAAGAGAGAGAGCTCGGAATACAAGAAATCCAACAACAAATTGGTGA
AGTGAATGAGGTTTTCAAAGATCTTGCTGTATTAGTCCATGAGCAAGGAA
CTATCATTGATGATATTGGATCTCATATTGAAAATTCCCAAGTAGCAACT
GCACAGGGAAAATCACAACTCGTGAAAGCTGCCAAGACCCAAAGATCAAA
TTCTTCTTTGACCTGTCTGCTTTTGGTGATATTTGGGATCGTGCTTCTTA
TATTGGTCGTAGTACTTGCAGCTTGATCGCAATATTATCTCAATGGGAGT
ATAGAGATAAATCTGAGACCACCTGCAACGAGAGGGTGATCTCTTGCTGA
TCTCTTTGCTGATGTTTCATGAAGAATCATTGCTGAGGAGCATGTGTCGG
ACGTTTAGTGTTACTGCATAATAGGGTTGCATCCAGTTAGGACATCTGAG
TTGCTTGGGTGGCGGGTGTCTTTTTGTTACTCTAAGTTGGTGCTTCTTTG
GGTTTGTGGAATTTGTGTTTCGGCTTATTATGTA
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