CX300833

Overview
NameCX300833
Unique NameCX300833
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length568
Libraries
Library NameType
PhyRootSw1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2806 contig Csv1_Contig2806:703..1271. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX300833 vs. ExPASy Swiss-Prot
Match: FAHD1_BOVIN (Fumarylacetoacetate hydrolase domain-containing protein 1 OS=Bos taurus GN=FAHD1 PE=2 SV=1)

HSP 1 Score: 103.99 bits (258), Expect = 5.428e-22
Identity = 54/122 (44.26%), Postives = 71/122 (58.20%), Query Frame = 1
Query:  133 LPKSAVPDPHNLELWLTVHNHYSLLSYFFMAFVKASNLFFTGWINFKCVSLQVDGEIRQKGSTKDMIFMIPYLISHISSIMTLFEGDVILTGTPQGVGPVKVGQKITAGITGLLDVHFDIEK 498
            +PK  +PDPHNL+LWL                                   +V+GE+RQ+G T  MIF IPY+IS++S IMTL EGD+ILTGTP+GVGPVK   +I AGI G+L + F +E+
Sbjct:  132 VPKEKIPDPHNLKLWL-----------------------------------KVNGELRQEGETSSMIFSIPYIISYVSKIMTLEEGDIILTGTPKGVGPVKENDEIQAGIHGVLSMKFKVER 218          
BLAST of CX300833 vs. ExPASy Swiss-Prot
Match: FAHD1_PONAB (Fumarylacetoacetate hydrolase domain-containing protein 1 OS=Pongo abelii GN=FAHD1 PE=2 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 2.694e-21
Identity = 53/122 (43.44%), Postives = 70/122 (57.38%), Query Frame = 1
Query:  133 LPKSAVPDPHNLELWLTVHNHYSLLSYFFMAFVKASNLFFTGWINFKCVSLQVDGEIRQKGSTKDMIFMIPYLISHISSIMTLFEGDVILTGTPQGVGPVKVGQKITAGITGLLDVHFDIEK 498
            +PK  +PDPH L+LWL                                   +V+GE+RQ+G T  MIF IPY+IS++S I+TL EGD+ILTGTP+GVGPVK   +I AGI GL+ + F +EK
Sbjct:  135 VPKEKIPDPHKLKLWL-----------------------------------KVNGELRQEGETSSMIFSIPYIISYVSKIITLEEGDIILTGTPKGVGPVKENDEIEAGIHGLVSMRFKVEK 221          
BLAST of CX300833 vs. ExPASy Swiss-Prot
Match: FAHD1_HUMAN (Fumarylacetoacetate hydrolase domain-containing protein 1 OS=Homo sapiens GN=FAHD1 PE=1 SV=2)

HSP 1 Score: 100.908 bits (250), Expect = 4.595e-21
Identity = 53/122 (43.44%), Postives = 70/122 (57.38%), Query Frame = 1
Query:  133 LPKSAVPDPHNLELWLTVHNHYSLLSYFFMAFVKASNLFFTGWINFKCVSLQVDGEIRQKGSTKDMIFMIPYLISHISSIMTLFEGDVILTGTPQGVGPVKVGQKITAGITGLLDVHFDIEK 498
            +PK  +PDPH L+LWL                                   +V+GE+RQ+G T  MIF IPY+IS++S I+TL EGD+ILTGTP+GVGPVK   +I AGI GL+ + F +EK
Sbjct:  135 VPKEKIPDPHKLKLWL-----------------------------------KVNGELRQEGETSSMIFSIPYIISYVSKIITLEEGDIILTGTPKGVGPVKENDEIEAGIHGLVSMTFKVEK 221          
BLAST of CX300833 vs. ExPASy Swiss-Prot
Match: FAHD1_MOUSE (Fumarylacetoacetate hydrolase domain-containing protein 1 OS=Mus musculus GN=Fahd1 PE=2 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 1.132e-19
Identity = 50/122 (40.98%), Postives = 69/122 (56.56%), Query Frame = 1
Query:  133 LPKSAVPDPHNLELWLTVHNHYSLLSYFFMAFVKASNLFFTGWINFKCVSLQVDGEIRQKGSTKDMIFMIPYLISHISSIMTLFEGDVILTGTPQGVGPVKVGQKITAGITGLLDVHFDIEK 498
            +PK  +PDPH L LWL                                   +V+GE+RQ+G T  MIF IPY+IS++S I+TL EGD+ILTGTP+GVGPVK   +I AGI G++ + F +++
Sbjct:  138 VPKEKIPDPHALRLWL-----------------------------------KVNGELRQEGKTSSMIFSIPYIISYVSKIITLEEGDLILTGTPKGVGPVKENDEIEAGIDGVVSMRFKVKR 224          
BLAST of CX300833 vs. ExPASy Swiss-Prot
Match: FAHD1_RAT (Fumarylacetoacetate hydrolase domain-containing protein 1 OS=Rattus norvegicus GN=Fahd1 PE=2 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 2.521e-19
Identity = 50/124 (40.32%), Postives = 69/124 (55.65%), Query Frame = 1
Query:  133 LPKSAVPDPHNLELWLTVHNHYSLLSYFFMAFVKASNLFFTGWINFKCVSLQVDGEIRQKGSTKDMIFMIPYLISHISSIMTLFEGDVILTGTPQGVGPVKVGQKITAGITGLLDVHFDIEKRR 504
            +PK  +PDPH L LWL                                   +V+GE+RQ+G T  MIF IPY+IS++S I+TL EGD+ILTGTP+GVG VK   +I AGI G++ + F +E+ +
Sbjct:  132 VPKEKIPDPHALRLWL-----------------------------------KVNGELRQEGKTSSMIFSIPYIISYVSKIITLEEGDLILTGTPKGVGAVKENDEIEAGIDGVVSMRFKVERSK 220          
BLAST of CX300833 vs. ExPASy Swiss-Prot
Match: FAHD1_DICDI (Fumarylacetoacetate hydrolase domain-containing protein 1 homolog OS=Dictyostelium discoideum GN=fahd1 PE=3 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 2.521e-19
Identity = 49/74 (66.22%), Postives = 58/74 (78.38%), Query Frame = 1
Query:  289 VDGEIRQKGSTKDMIFMIPYLISHISSIMTLFEGDVILTGTPQGVGPVKVGQKITAGITGL-LDVHFDIEKRRR 507
            VDG+I+QKG+T  MIF +P+LI +ISSIMTL  GD+ILTGTP GVGPVK GQ I  GITGL  D+ FDI  R+R
Sbjct:  144 VDGQIKQKGNTNQMIFDVPHLIQYISSIMTLESGDLILTGTPSGVGPVKPGQVIKCGITGLDTDMQFDIILRKR 217          
BLAST of CX300833 vs. ExPASy Swiss-Prot
Match: Y643_PYRHO (Uncharacterized protein PH0643 OS=Pyrococcus horikoshii GN=PH0643 PE=3 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 1.432e-14
Identity = 39/72 (54.17%), Postives = 51/72 (70.83%), Query Frame = 1
Query:  277 VSLQVDGEIRQKGSTKDMIFMIPYLISHISSIMTLFEGDVILTGTPQGVGPVKVGQKITAGITGLLDVHFDI 492
            + L+V+G+IRQ G T  MIF IP LI +IS IMTL  GD+I TGTP GVGP++ G +I A I G+  + FD+
Sbjct:  151 IGLKVNGKIRQLGRTSQMIFKIPELIEYISHIMTLEPGDIIATGTPPGVGPLRHGDRIEAWIEGIGKMEFDV 222          
BLAST of CX300833 vs. ExPASy Swiss-Prot
Match: Y1397_PYRAB (Uncharacterized protein PYRAB13970 OS=Pyrococcus abyssi GN=PYRAB13970 PE=3 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 3.190e-14
Identity = 37/65 (56.92%), Postives = 49/65 (75.38%), Query Frame = 1
Query:  277 VSLQVDGEIRQKGSTKDMIFMIPYLISHISSIMTLFEGDVILTGTPQGVGPVKVGQKITAGITGL 471
            + L+V+G++RQ G T +MIF IP LI +ISSIMTL  GD+I TGTP GVGP++ G KI A + G+
Sbjct:  146 IGLKVNGKVRQLGRTSEMIFKIPELIEYISSIMTLEPGDIIATGTPPGVGPLRHGDKIEAWVEGI 210          
BLAST of CX300833 vs. ExPASy Swiss-Prot
Match: HPAG_ECOLX (4-hydroxyphenylacetate degradation bifunctional isomerase/decarboxylase OS=Escherichia coli GN=hpaG PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 8.686e-12
Identity = 38/113 (33.63%), Postives = 57/113 (50.44%), Query Frame = 1
Query:  133 LPKSAVPDPHNLELWLTVHNHYSLLSYFFMAFVKASNLFFTGWINFKCVSLQVDGEIRQKGSTKDMIFMIPYLISHISSIMTLFEGDVILTGTPQGVGPVKVGQKITAGITGL 471
            +PK A+PDPHNL L                                      V+GE+RQ+G+T D+IF +P+LI+++S  MTL  GD+I TGTP+G+  V  G ++   + G+
Sbjct:  338 VPKEAIPDPHNLTL-----------------------------------RTFVNGELRQQGTTADLIFSVPFLIAYLSEFMTLNPGDMIATGTPKGLSDVVPGDEVVVEVEGV 415          
BLAST of CX300833 vs. ExPASy Swiss-Prot
Match: YCGM_ECOLI (Uncharacterized protein ycgM OS=Escherichia coli (strain K12) GN=ycgM PE=1 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 1.482e-11
Identity = 36/73 (49.32%), Postives = 48/73 (65.75%), Query Frame = 1
Query:  250 FTGWINFKCVSLQVDGEIRQKGSTKDMIFMIPYLISHISSIMTLFEGDVILTGTPQGVGPVKVGQKITAGITG 468
            FTG      +SL V+GE RQ+G+T DMI  I  LI+++S   TL  GDV+LTGTP GVGP++ G ++T    G
Sbjct:  139 FTGDPQNTTLSLSVNGEQRQQGTTADMIHKIVPLIAYMSKFFTLKAGDVVLTGTPDGVGPLQSGDELTVTFDG 211          
The following BLAST results are available for this feature:
BLAST of CX300833 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 13
Match NameE-valueIdentityDescription
FAHD1_BOVIN5.428e-2244.26Fumarylacetoacetate hydrolase domain-containing pr... [more]
FAHD1_PONAB2.694e-2143.44Fumarylacetoacetate hydrolase domain-containing pr... [more]
FAHD1_HUMAN4.595e-2143.44Fumarylacetoacetate hydrolase domain-containing pr... [more]
FAHD1_MOUSE1.132e-1940.98Fumarylacetoacetate hydrolase domain-containing pr... [more]
FAHD1_RAT2.521e-1940.32Fumarylacetoacetate hydrolase domain-containing pr... [more]
FAHD1_DICDI2.521e-1966.22Fumarylacetoacetate hydrolase domain-containing pr... [more]
Y643_PYRHO1.432e-1454.17Uncharacterized protein PH0643 OS=Pyrococcus horik... [more]
Y1397_PYRAB3.190e-1456.92Uncharacterized protein PYRAB13970 OS=Pyrococcus a... [more]
HPAG_ECOLX8.686e-1233.634-hydroxyphenylacetate degradation bifunctional is... [more]
YCGM_ECOLI1.482e-1149.32Uncharacterized protein ycgM OS=Escherichia coli (... [more]

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Properties
Property NameValue
Genbank descriptionC08002G02SK PhyRootSw1 Citrus sinensis cDNA clone C08002G02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX300833 ID=CX300833; Name=CX300833; organism=Citrus sinensis; type=EST; length=568bp
GCACGAGGGCACCCTTTACTTGTATCTGCTAGTAGAAAAGAAGAGAGGAA
GAGAATTTTATTTTCTATTGCCAATTTTGTTCTGTGTTTACTAAATACAC
TCCTTTTTGACTTGTTTAAAATATATTTGCAGCTACCAAAGTCAGCAGTG
CCTGACCCTCACAACTTGGAACTATGGTTAACGGTTCATAATCATTACTC
TTTACTCTCATATTTCTTTATGGCTTTTGTCAAAGCTTCAAATTTGTTTT
TCACTGGGTGGATTAACTTTAAATGTGTTTCACTGCAGGTTGATGGAGAG
ATTCGACAGAAAGGCTCCACTAAGGATATGATTTTTATGATACCATATCT
AATTAGCCACATAAGTTCAATTATGACACTTTTTGAAGGAGATGTCATAT
TAACAGGCACTCCACAGGGCGTTGGTCCTGTAAAAGTTGGTCAAAAGATA
ACAGCTGGTATAACGGGCCTCCTGGATGTACACTTTGATATTGAAAAACG
CCGAAGGCCAGGAAGTGCTTGAACTTATGATGTCCACTCCACTGCAACTG
CATTTCAAGCAAAATGTA
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