CX300765

Overview
NameCX300765
Unique NameCX300765
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length652
Libraries
Library NameType
PhyRootSw1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX300765 vs. ExPASy Swiss-Prot
Match: GLYC2_DICDI (Serine hydroxymethyltransferase 2 OS=Dictyostelium discoideum GN=shmt2 PE=3 SV=1)

HSP 1 Score: 244.202 bits (622), Expect = 4.430e-64
Identity = 116/201 (57.71%), Postives = 157/201 (78.11%), Query Frame = -1
Query:   47 KRVVQGKEIGDYDFEETVNQAVFPSLQGGPHENVIAAVAVALKEAMTPEFKDYAVQVKKNAAKLAEELTKRGYKLMTGGTENHLVLWDLRPLALTGSKMEKFYEAVNISVNKNSVFGDTSALTPGGVRIGVPALTTRGLKEKEFEKIVEFLDKGIKIALDIQSKSGKMLKDFADALKTNEDVKKLRDEVEAFAAAFPMPGK 649
            +R  +G  I D D E  +N AVFPS QGGPHEN IA +AVALKEA +P+F++Y  QV++N+  + EEL KRGY L+T GT+NHLVLWDLRP  +TGSK+EK  +  +I+VNKN+V+GDT+A+ PGGVR+G PALT+RGLKE++F K+V+FLD+ +KI+LDIQSK GK + DF  A+  N+D+K++R EV+ F+  F MPG+
Sbjct:  281 RRDAKGNIIDD-DLENRINFAVFPSCQGGPHENTIAGIAVALKEASSPDFQEYTKQVRRNSQTMGEELKKRGYSLVTEGTDNHLVLWDLRPQGITGSKIEKACDEAHITVNKNAVYGDTNAIAPGGVRLGAPALTSRGLKEQDFVKVVDFLDRVVKISLDIQSKVGKKMPDFQRAIADNQDLKQIRQEVKEFSTKFGMPGE 480          
BLAST of CX300765 vs. ExPASy Swiss-Prot
Match: GLYC1_DICDI (Serine hydroxymethyltransferase 1 OS=Dictyostelium discoideum GN=shmt1 PE=1 SV=1)

HSP 1 Score: 243.432 bits (620), Expect = 7.556e-64
Identity = 121/202 (59.90%), Postives = 155/202 (76.73%), Query Frame = -1
Query:   50 GKRVV-QGKEIGDYDFEETVNQAVFPSLQGGPHENVIAAVAVALKEAMTPEFKDYAVQVKKNAAKLAEELTKRGYKLMTGGTENHLVLWDLRPLALTGSKMEKFYEAVNISVNKNSVFGDTSALTPGGVRIGVPALTTRGLKEKEFEKIVEFLDKGIKIALDIQSKSGKMLKDFADALKTNEDVKKLRDEVEAFAAAFPMPG 652
            GKRV   GKEI +YD E  +N AVFPSLQGGPHENVIA VAVALKEA + EFK+YA+QVKKNAA +   L  +GYKL+T GT+NHL+LWDLRP  LTG+K EK  +  NI+VNKN+V GDT+A++PGG+RIG  ALT+RGLKE +FEKI +FLD+ + I+L+IQ + GK L DF   +  ++++  LR EVE F++ F +PG
Sbjct:  255 GKRVDGNGKEIEEYDIESKINFAVFPSLQGGPHENVIAGVAVALKEADSQEFKEYALQVKKNAAAIGNALMNKGYKLVTNGTDNHLILWDLRPKELTGNKFEKAADIANITVNKNAVHGDTNAISPGGIRIGSSALTSRGLKEADFEKIADFLDRIVSISLEIQGRVGKKLVDFVVEINKSKELLDLRKEVEEFSSKFTLPG 456          
BLAST of CX300765 vs. ExPASy Swiss-Prot
Match: GLYM_HUMAN (Serine hydroxymethyltransferase, mitochondrial OS=Homo sapiens GN=SHMT2 PE=1 SV=3)

HSP 1 Score: 213.001 bits (541), Expect = 1.094e-54
Identity = 107/199 (53.77%), Postives = 149/199 (74.87%), Query Frame = -1
Query:   50 GKEIGDYDFEETVNQAVFPSLQGGPHENVIAAVAVALKEAMTPEFKDYAVQVKKNAAKLAEELTKRGYKLMTGGTENHLVLWDLRPLALTGSKMEKFYEAVNISVNKNSVFGDTSALTPGGVRIGVPALTTRGLKEKEFEKIVEFLDKGIKIALDIQSKSGKMLKDFADAL----KTNEDVKKLRDEVEAFAAAFPMPG 634
            G+EI  Y FE+ +N AVFPSLQGGPH + IAAVAVALK+A TP F++Y++QV KNA  +A+ L +RGY L++GGT+NHLVL DLRP  L G++ E+  E V+I+ NKN+  GD SA+TPGG+R+G PALT+R  +E +F ++V+F+D+G+ I L+++SK+ K L+DF   L    +T++ +  LR  VE FA AFPMPG
Sbjct:  304 GREI-PYTFEDRINFAVFPSLQGGPHNHAIAAVAVALKQACTPMFREYSLQVLKNARAMADALLERGYSLVSGGTDNHLVLVDLRPKGLDGARAERVLELVSITANKNTCPGDRSAITPGGLRLGAPALTSRQFREDDFRRVVDFIDEGVNIGLEVKSKTAK-LQDFKSFLLKDSETSQRLANLRQRVEQFARAFPMPG 500          
BLAST of CX300765 vs. ExPASy Swiss-Prot
Match: GLYM_BOVIN (Serine hydroxymethyltransferase, mitochondrial OS=Bos taurus GN=SHMT2 PE=2 SV=1)

HSP 1 Score: 211.846 bits (538), Expect = 2.436e-54
Identity = 108/199 (54.27%), Postives = 146/199 (73.37%), Query Frame = -1
Query:   50 GKEIGDYDFEETVNQAVFPSLQGGPHENVIAAVAVALKEAMTPEFKDYAVQVKKNAAKLAEELTKRGYKLMTGGTENHLVLWDLRPLALTGSKMEKFYEAVNISVNKNSVFGDTSALTPGGVRIGVPALTTRGLKEKEFEKIVEFLDKGIKIALDIQSKSGKMLKDFADAL----KTNEDVKKLRDEVEAFAAAFPMPG 634
            G+EI  Y FE+ +N AVFPSLQGGPH + IAAVAVALK+A TP F++Y++Q+ KNA  +A  L +RGY L++GGT+NHLVL DLRP  L G++ E+  E V+I+ NKN+  GD SA+TPGG+R+G PALT+RG  E +F K+V F+D+G+ I L+++SK+ K L+DF   L    +T+  +  LR  VE FA AFPMPG
Sbjct:  304 GREI-PYTFEDRINFAVFPSLQGGPHNHAIAAVAVALKQACTPMFREYSLQILKNAQAMANALLERGYSLVSGGTDNHLVLVDLRPKGLDGARAERVLELVSITANKNTCPGDRSAITPGGLRLGAPALTSRGFLEDDFRKVVGFIDEGVNIGLEVKSKTTK-LQDFKSFLLKDPETSHQLADLRQRVEQFARAFPMPG 500          
BLAST of CX300765 vs. ExPASy Swiss-Prot
Match: GLYM_ARATH (Serine hydroxymethyltransferase, mitochondrial OS=Arabidopsis thaliana GN=SHM1 PE=1 SV=1)

HSP 1 Score: 209.534 bits (532), Expect = 1.209e-53
Identity = 106/201 (52.74%), Postives = 147/201 (73.13%), Query Frame = -1
Query:   50 QGKEIGDYDFEETVNQAVFPSLQGGPHENVIAAVAVALKEAMTPEFKDYAVQVKKNAAKLAEELTKRGYKLMTGGTENHLVLWDLRPLALTGSKMEKFYEAVNISVNKNSVFGDTSALTPGGVRIGVPALTTRGLKEKEFEKIVEFLDKGIKIALDIQSKS-GKMLKDFADALKTN----EDVKKLRDEVEAFAAAFPMPG 637
            QGKE+  YDFE+ +NQAVFP LQGGPH + I  +AVALK+A T E+K Y  QV  N+AK A+ L +RGY+L++GGT+NHLVL +L+P  + GS++EK  EAV+I+ NKN+V GD SA+ PGG+R+G PALT+RG  E++F K+ E+ DK + IAL ++S++ G  LKDF  A++++     ++ KLR EVE FA  FP  G
Sbjct:  308 QGKEVL-YDFEDKINQAVFPGLQGGPHNHTITGLAVALKQATTSEYKAYQEQVLSNSAKFAQTLMERGYELVSGGTDNHLVLVNLKPKGIDGSRVEKVLEAVHIASNKNTVPGDVSAMVPGGIRMGTPALTSRGFVEEDFAKVAEYFDKAVTIALKVKSEAQGTKLKDFVSAMESSSTIQSEIAKLRHEVEEFAKQFPTIG 507          
BLAST of CX300765 vs. ExPASy Swiss-Prot
Match: GLYM_RABIT (Serine hydroxymethyltransferase, mitochondrial OS=Oryctolagus cuniculus GN=SHMT2 PE=1 SV=2)

HSP 1 Score: 208.764 bits (530), Expect = 2.063e-53
Identity = 105/199 (52.76%), Postives = 148/199 (74.37%), Query Frame = -1
Query:   50 GKEIGDYDFEETVNQAVFPSLQGGPHENVIAAVAVALKEAMTPEFKDYAVQVKKNAAKLAEELTKRGYKLMTGGTENHLVLWDLRPLALTGSKMEKFYEAVNISVNKNSVFGDTSALTPGGVRIGVPALTTRGLKEKEFEKIVEFLDKGIKIALDIQSKSGKMLKDFADAL----KTNEDVKKLRDEVEAFAAAFPMPG 634
            G+EI  Y FE+ +N AVFPSLQGGPH + IAAVAVALK+A TP F++Y++QV KNA  +A+ L +RGY L++GGT+NHLVL DLRP  L G++ E+  E V+I+ NKN+  GD SA+TPGG+R+G PALT+R  +E +F ++V+F+D+G+ I L+++ K+ K L+DF   L    +T++ +  LR  V+ FA AFPMPG
Sbjct:  304 GQEI-PYTFEDRINFAVFPSLQGGPHNHAIAAVAVALKQACTPMFREYSLQVLKNARAMADALLERGYSLVSGGTDNHLVLVDLRPKGLDGARAERVLELVSITANKNTCPGDRSAITPGGLRLGAPALTSRQFREDDFRRVVDFIDEGVNIGLEVKRKTAK-LQDFKSFLLKDPETSQHLADLRRRVQQFARAFPMPG 500          
BLAST of CX300765 vs. ExPASy Swiss-Prot
Match: GLYM_PEA (Serine hydroxymethyltransferase, mitochondrial OS=Pisum sativum PE=1 SV=1)

HSP 1 Score: 202.601 bits (514), Expect = 1.478e-51
Identity = 100/201 (49.75%), Postives = 146/201 (72.64%), Query Frame = -1
Query:   50 QGKEIGDYDFEETVNQAVFPSLQGGPHENVIAAVAVALKEAMTPEFKDYAVQVKKNAAKLAEELTKRGYKLMTGGTENHLVLWDLRPLALTGSKMEKFYEAVNISVNKNSVFGDTSALTPGGVRIGVPALTTRGLKEKEFEKIVEFLDKGIKIALDIQSKS-GKMLKDFADALKTN----EDVKKLRDEVEAFAAAFPMPG 637
            QGKE+  YD+E+ +NQAVFP LQGGPH + I  +AVALK+A TPE++ Y  QV  N++K A+ L+++GY L++GGTENHLVL +L+   + GS++EK  E V+I+ NKN+V GD SA+ PGG+R+G PALT+RG  E++F K+ E+ D  + +AL ++++S G  LKDF +AL+T+     ++ KL+ +VE FA  FP  G
Sbjct:  309 QGKEVF-YDYEDKINQAVFPGLQGGPHNHTITGLAVALKQATTPEYRAYQEQVLSNSSKFAKALSEKGYDLVSGGTENHLVLVNLKNKGIDGSRVEKVLELVHIAANKNTVPGDVSAMVPGGIRMGTPALTSRGFVEEDFVKVAEYFDAAVSLALKVKAESKGTKLKDFVEALQTSSYVQSEISKLKHDVEEFAKQFPTIG 508          
BLAST of CX300765 vs. ExPASy Swiss-Prot
Match: GLYM_FLAPR (Serine hydroxymethyltransferase 1, mitochondrial OS=Flaveria pringlei PE=2 SV=1)

HSP 1 Score: 202.601 bits (514), Expect = 1.478e-51
Identity = 103/200 (51.50%), Postives = 143/200 (71.50%), Query Frame = -1
Query:   50 QGKEIGDYDFEETVNQAVFPSLQGGPHENVIAAVAVALKEAMTPEFKDYAVQVKKNAAKLAEELTKRGYKLMTGGTENHLVLWDLRPLALTGSKMEKFYEAVNISVNKNSVFGDTSALTPGGVRIGVPALTTRGLKEKEFEKIVEFLDKGIKIALDIQSKS-GKMLKDFADALKTN---EDVKKLRDEVEAFAAAFPMPG 637
            QGKE+  YD+E+ +NQAVFP LQGGPH + I  +AVALK+A T E+K Y  QV  N+AK AE L K GY+L++GGTENHLVL +L+   + GSK+EK  EAV+I+ NKN+V GD SA+ PGG+R+G PALT+RG  E++F K+  F D  +K+A+ I+ ++ G  LKDF  A++++    ++ KLR +VE +A  FP  G
Sbjct:  309 QGKEVF-YDYEDKINQAVFPGLQGGPHNHTITGLAVALKQATTAEYKAYQEQVMSNSAKFAETLVKSGYELVSGGTENHLVLVNLKNKGIDGSKVEKVLEAVHIAANKNTVPGDVSAMVPGGIRMGTPALTSRGFVEEDFAKVAYFFDLAVKLAVKIKGEAKGTKLKDFVTAMESSAIQSEISKLRHDVEEYAKQFPTIG 507          
BLAST of CX300765 vs. ExPASy Swiss-Prot
Match: GLYM_SOLTU (Serine hydroxymethyltransferase, mitochondrial OS=Solanum tuberosum PE=2 SV=1)

HSP 1 Score: 198.749 bits (504), Expect = 2.134e-50
Identity = 98/201 (48.76%), Postives = 146/201 (72.64%), Query Frame = -1
Query:   50 QGKEIGDYDFEETVNQAVFPSLQGGPHENVIAAVAVALKEAMTPEFKDYAVQVKKNAAKLAEELTKRGYKLMTGGTENHLVLWDLRPLALTGSKMEKFYEAVNISVNKNSVFGDTSALTPGGVRIGVPALTTRGLKEKEFEKIVEFLDKGIKIALDIQSKS-GKMLKDFADALKTNEDVK----KLRDEVEAFAAAFPMPG 637
            QGKE+  YD+E+ +NQAVFP LQGGPH + I  +AVALK+A TPE++ Y  QV  N++K A+ L ++GY+L++GGT+NHLVL +++   + GS++EK  EAV+I+ NKN+V GD SA+ PGG+R+G PALT+RG  E++F K+ +F D  +KIA+ +++++ G  LKDF   L+++  +K    KLR +VE +A  FP  G
Sbjct:  309 QGKEVF-YDYEDKINQAVFPGLQGGPHNHTITGLAVALKQATTPEYRAYQEQVLSNSSKFAQALGEKGYELVSGGTDNHLVLVNMKNKGIDGSRVEKVLEAVHIAANKNTVPGDVSAMVPGGIRMGTPALTSRGFLEEDFVKVADFFDAAVKIAVKVKAETQGTKLKDFVATLESSAPIKSEIAKLRHDVEEYAKQFPTIG 508          
BLAST of CX300765 vs. ExPASy Swiss-Prot
Match: GLYC_CAEBR (Serine hydroxymethyltransferase OS=Caenorhabditis briggsae GN=mel-32 PE=3 SV=3)

HSP 1 Score: 198.749 bits (504), Expect = 2.134e-50
Identity = 100/206 (48.54%), Postives = 137/206 (66.50%), Query Frame = -1
Query:   50 GKRVVQGKEIGD-YDFEETVNQAVFPSLQGGPHENVIAAVAVALKEAMTPEFKDYAVQVKKNAAKLAEELTKRGYKLMTGGTENHLVLWDLRPLALTGSKMEKFYEAVNISVNKNSVFGDTSALTPGGVRIGVPALTTRGLKEKEFEKIVEFLDKGIKIALDIQSKSGKMLKDFADALKTNE----DVKKLRDEVEAFAAAFPMPG 652
            G R V  K +   YD EE +N AVFP LQGGPH + IA +AVALK+ ++ +F  Y  Q+ KNA  LAE L K GY L TGGT+NHL+L DLRP+ + G++ E   +  +I+ NKN+  GD SAL PGG+R+G PALT+RG KE++FEK+ +F+ +G++IA    +++GK LKDF     TNE    +V +L   VE F+  F +PG
Sbjct:  302 GVRSVNAKGVETLYDLEEKINSAVFPGLQGGPHNHTIAGIAVALKQCLSEDFVQYGEQILKNAKTLAERLKKHGYSLATGGTDNHLLLVDLRPIGVEGARAEHILDLAHIACNKNTCPGDVSALRPGGIRLGTPALTSRGFKEQDFEKVGDFIHEGVQIAKKYNAEAGKTLKDFKAFTATNEQFKQEVAELAKRVEEFSGKFEIPG 507          
The following BLAST results are available for this feature:
BLAST of CX300765 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
GLYC2_DICDI4.430e-6457.71Serine hydroxymethyltransferase 2 OS=Dictyostelium... [more]
GLYC1_DICDI7.556e-6459.90Serine hydroxymethyltransferase 1 OS=Dictyostelium... [more]
GLYM_HUMAN1.094e-5453.77Serine hydroxymethyltransferase, mitochondrial OS=... [more]
GLYM_BOVIN2.436e-5454.27Serine hydroxymethyltransferase, mitochondrial OS=... [more]
GLYM_ARATH1.209e-5352.74Serine hydroxymethyltransferase, mitochondrial OS=... [more]
GLYM_RABIT2.063e-5352.76Serine hydroxymethyltransferase, mitochondrial OS=... [more]
GLYM_PEA1.478e-5149.75Serine hydroxymethyltransferase, mitochondrial OS=... [more]
GLYM_FLAPR1.478e-5151.50Serine hydroxymethyltransferase 1, mitochondrial O... [more]
GLYM_SOLTU2.134e-5048.76Serine hydroxymethyltransferase, mitochondrial OS=... [more]
GLYC_CAEBR2.134e-5048.54Serine hydroxymethyltransferase OS=Caenorhabditis ... [more]

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Properties
Property NameValue
Genbank descriptionC08002A04SK PhyRootSw1 Citrus sinensis cDNA clone C08002A04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX300765 ID=CX300765; Name=CX300765; organism=Citrus sinensis; type=EST; length=652bp
CACGAGGCAATTTCATTGAAATAGTAGATATATGAATAATTCTTTACTTG
CCAGGCATTGGGAAAGCAGCAGCAAAAGCTTCGACTTCATCTCTCAGTTT
CTTGACGTCTTCGTTTGTCTTAAGAGCATCAGCAAAGTCTTTCAGCATCT
TTCCAGATTTGGATTGAATGTCCAAAGCAATCTTGATGCCTTTGTCCAAA
AATTCAACAATCTTTTCAAATTCCTTTTCTTTTAATCCACGAGTAGTTAA
AGCAGGAACTCCAATACGAACACCTCCAGGAGTCAAGGCAGATGTGTCTC
CAAACACAGAGTTCTTGTTTACAGAAATGTTGACAGCTTCATAGAACTTT
TCCATCTTGGATCCAGTCAAGGCAAGAGGTCTCAAATCCCACAGGACCAA
GTGGTTTTCTGTTCCACCAGTCATAAGCTTGTATCCTCTCTTTGTGAGCT
CTTCAGCCAACTTAGCAGCATTCTTCTTCACTTGCACAGCATAGTCTTTG
AATTCAGGAGTCATTGCTTCCTTCAAAGCAACAGCAACAGCTGCAATAAC
ATTTTCATGGGGACCTCCCTGAAGGGATGGGAAAACTGCTTGATTCACAG
TTTCTTCAAAATCATAGTCTCCAATTTCCTTTCCTTGAACAACTCTCTTT
CC
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