CX300760

Overview
NameCX300760
Unique NameCX300760
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length573
Libraries
Library NameType
PhyRootSw1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX300760 vs. ExPASy Swiss-Prot
Match: CA128_MOUSE (UPF0424 protein C1orf128 homolog OS=Mus musculus GN=Trp26 PE=2 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 3.023e-12
Identity = 46/152 (30.26%), Postives = 77/152 (50.66%), Query Frame = 3
Query:  111 WNLYAMLDVNETRALNVTQPSDVIGIFKPHVLRLQEEPRLXXXXXXXXXXXXRFTSPVSLRRLMIIGGGEEQHHPSQVRCYVNTDLIDFNNVEDFVPAQTFNLPVNPIGVVELTTVLQPFTNIQTVAFYFPQNHGEQDTTIIKYIGMQGEHT 566
            + LY  +D+   + LN ++     G+FKP   R      +             FT  V L+ ++I+G  ++ H PS++R Y N   + F++ E   P QTF+L  +  G +E  T +  F+N+  ++ +  +N G  DTT I YIG++GE T
Sbjct:   29 YGLYLRIDLERLQCLNESREGSGRGVFKPWEERTDRSKFVESDADEELLFNIPFTGNVKLKGVIIMGEDDDSH-PSEMRLYKNIPQMSFDDTER-EPEQTFSLNRDITGELEYATKISRFSNVYHLSIHISKNFG-ADTTKIFYIGLRGEWT 177          
BLAST of CX300760 vs. ExPASy Swiss-Prot
Match: CA128_HUMAN (UPF0424 protein C1orf128 OS=Homo sapiens GN=C1orf128 PE=1 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 3.949e-12
Identity = 45/152 (29.61%), Postives = 77/152 (50.66%), Query Frame = 3
Query:  111 WNLYAMLDVNETRALNVTQPSDVIGIFKPHVLRLQEEPRLXXXXXXXXXXXXRFTSPVSLRRLMIIGGGEEQHHPSQVRCYVNTDLIDFNNVEDFVPAQTFNLPVNPIGVVELTTVLQPFTNIQTVAFYFPQNHGEQDTTIIKYIGMQGEHT 566
            + LY  +D+   + LN ++     G+FKP   R      +             FT  V L+ ++I+G  ++ H PS++R Y N   + F++ E   P QTF+L  +  G +E  T +  F+N+  ++ +  +N G  DTT + YIG++GE T
Sbjct:   29 YGLYLRIDLERLQCLNESREGSGRGVFKPWEERTDRSKFVESDADEELLFNIPFTGNVKLKGIIIMGEDDDSH-PSEMRLYKNIPQMSFDDTER-EPDQTFSLNRDLTGELEYATKISRFSNVYHLSIHISKNFG-ADTTKVFYIGLRGEWT 177          
BLAST of CX300760 vs. ExPASy Swiss-Prot
Match: CA128_DANRE (UPF0424 protein C1orf128 homolog OS=Danio rerio GN=zgc:77241 PE=2 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 1.500e-11
Identity = 45/172 (26.16%), Postives = 82/172 (47.67%), Query Frame = 3
Query:   51 HGSGMIGSTHSHDTRYPDDNWNLYAMLDVNETRALNVTQPSDVIGIFKPHVLRLQEEPRLXXXXXXXXXXXXRFTSPVSLRRLMIIGGGEEQHHPSQVRCYVNTDLIDFNNVEDFVPAQTFNLPVNPIGVVELTTVLQPFTNIQTVAFYFPQNHGEQDTTIIKYIGMQGEHT 566
            HG G     H    R  +  + LY  +D+ + + LN ++  D   +FKP   R      +             FT  V L+ + II G +++ HP+++R + N   + F++     P Q F L  +P   +E  T +  F+N++ ++ +  +N G + T +  YIG++GE+T
Sbjct:   10 HGHGCCECEHEPAERGVE--YELYRRIDIEKLQCLNESRDGDGKLVFKPWDQRTDRNKFVESDADEELLFNIPFTGSVKLKGI-IISGEDDESHPAEIRLFKNIPQMSFDDTSR-EPEQAFRLNRDPRAELEYPTKIARFSNVEHLSIHVSRNFGAESTRVY-YIGLRGEYT 176          
BLAST of CX300760 vs. ExPASy Swiss-Prot
Match: U424_DROME (UPF0424 protein CG6153 OS=Drosophila melanogaster GN=CG6153 PE=2 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 2.559e-11
Identity = 50/183 (27.32%), Postives = 80/183 (43.72%), Query Frame = 3
Query:   48 PHGSGMIGSTHSHDTRYPDD------NWNLYAMLDVNETRALNVTQPSDVIGIFKPHVLRLQEEPRLXXXXXXXXXXXXRFTSPVSLRRLMIIGGGEEQHHPSQVRCYVNTDLIDFNNVEDFVPAQTFNLPVNPIGVVELTTVLQPFTNIQTVAFYFPQNHGEQDTTIIKYIGMQGEHT--HY 572
            PHG        SH+    D        ++LY  +D++    LN         +FKP+  R      +             FT  + L+ + II G  +  HP+ V+ + N   + F++     P Q F L  +  G +E +  +  F+++  ++ YFP N GE D T I YIG++GE T  HY
Sbjct:    2 PHGHSHDHGGCSHEASDVDHALEMGIEYSLYTKIDLDNVECLNEETDGQGKSVFKPYEKRQDLSKYVESDADEELLFNIPFTGNIKLKGI-IISGANDDSHPNMVKIFKNRPRMTFDDARA-KPDQEFQLTRDARGEIEYSPKVVTFSSVHHLSLYFPSNFGE-DITRIYYIGLRGEFTEAHY 181          
The following BLAST results are available for this feature:
BLAST of CX300760 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 4
Match NameE-valueIdentityDescription
CA128_MOUSE3.023e-1230.26UPF0424 protein C1orf128 homolog OS=Mus musculus G... [more]
CA128_HUMAN3.949e-1229.61UPF0424 protein C1orf128 OS=Homo sapiens GN=C1orf1... [more]
CA128_DANRE1.500e-1126.16UPF0424 protein C1orf128 homolog OS=Danio rerio GN... [more]
U424_DROME2.559e-1127.32UPF0424 protein CG6153 OS=Drosophila melanogaster ... [more]
back to top
Properties
Property NameValue
Genbank descriptionC08001H10SK PhyRootSw1 Citrus sinensis cDNA clone C08001H10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX300760 ID=CX300760; Name=CX300760; organism=Citrus sinensis; type=EST; length=573bp
ATCCCTCATCCTTCATAACAATCCTAGAATAATCAATAAGAATGCCACCT
CATGGATCAGGAATGATTGGCTCTACTCATAGCCACGATACGAGATATCC
TGATGACAACTGGAATCTCTACGCTATGCTAGATGTGAATGAGACCAGAG
CTTTGAATGTGACTCAACCTTCAGATGTAATCGGAATATTCAAACCCCAC
GTCCTTCGTCTGCAAGAAGAACCTCGTCTGATTAGTGATGCTGATGCGGA
GATCATTATAATCGCTCGTTTTACATCTCCTGTGAGTCTGAGGAGATTGA
TGATCATTGGTGGAGGGGAGGAGCAACATCACCCCTCTCAAGTCAGATGC
TATGTAAATACCGACCTGATTGATTTTAATAACGTTGAAGATTTTGTTCC
TGCTCAAACATTTAACCTACCAGTCAATCCAATAGGAGTGGTTGAATTGA
CGACAGTTCTGCAGCCTTTCACAAACATTCAAACAGTGGCTTTCTACTTC
CCTCAGAATCACGGTGAGCAAGATACAACGATCATTAAATACATTGGAAT
GCAAGGAGAGCATACCCATTATC
back to top