CX300757

Overview
NameCX300757
Unique NameCX300757
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length681
Libraries
Library NameType
PhyRootSw1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX300757 vs. ExPASy Swiss-Prot
Match: RS3A2_ARATH (40S ribosomal protein S3a-2 OS=Arabidopsis thaliana GN=RPS3AB PE=2 SV=3)

HSP 1 Score: 225.328 bits (573), Expect = 2.302e-58
Identity = 117/172 (68.02%), Postives = 135/172 (78.49%), Query Frame = 1
Query:    1 LVAEDVQGTNVLTNFHGMDITRDKLCSLIRKWQTLIEASVDVRTTDGYVLRLFAIAFTKKQQNQAARSTCYAQSGQVRNIRKKMFEIMTEEASKCDLKELVQKFIAHPDSIGAEIEKKCQSIFPLQNVLIRKVKMLKKPKFDVTKLMELHGDTTAEDSGVAIDKAAAANTVK 516
            L AEDVQG NVLT F GMD T DKL SL++KWQTLIEA VDV+TTDGY LR+F IAFTK++ NQ  R TCYAQS Q+R IR+KM EIM +EAS CDLKELV KFI  P++IG EIEK  Q I+PLQNV IRKVK+LK PKFD+ KLME+HGD TAED GV +D+ A    V+
Sbjct:   86 LRAEDVQGRNVLTQFWGMDFTTDKLRSLVKKWQTLIEAHVDVKTTDGYTLRMFCIAFTKRRANQVKR-TCYAQSSQIRQIRRKMSEIMVKEASSCDLKELVAKFI--PEAIGREIEKATQGIYPLQNVFIRKVKILKAPKFDLGKLMEVHGDYTAEDVGVKVDRPADETMVE 254          
BLAST of CX300757 vs. ExPASy Swiss-Prot
Match: RS3A_CHLRE (40S ribosomal protein S3a OS=Chlamydomonas reinhardtii GN=CHLREDRAFT_168484 PE=3 SV=1)

HSP 1 Score: 222.246 bits (565), Expect = 1.949e-57
Identity = 115/168 (68.45%), Postives = 133/168 (79.17%), Query Frame = 1
Query:    1 LVAEDVQGTNVLTNFHGMDITRDKLCSLIRKWQTLIEASVDVRTTDGYVLRLFAIAFTKKQQNQAARSTCYAQSGQVRNIRKKMFEIMTEEASKCDLKELVQKFIAHPDSIGAEIEKKCQSIFPLQNVLIRKVKMLKKPKFDVTKLMELHGDTTAEDSGVAIDKAAAA 504
            L  EDVQG N LTNF GMD T DKL SL+RKWQTLIEA VDV+TTDGY LR+F I+FTKK+Q Q  R TCYAQS Q+R IRKKM EI+T EA+ CDLKELV KFI  P+SIG +IEK CQ I+PLQN  IRKVK+LK PKFD+TKLME+HGD  +E+ G  I++ AAA
Sbjct:   86 LRVEDVQGRNCLTNFWGMDFTTDKLRSLVRKWQTLIEAHVDVKTTDGYTLRVFCISFTKKRQGQIKR-TCYAQSAQIRQIRKKMMEIITREATSCDLKELVAKFI--PESIGKDIEKSCQGIYPLQNTFIRKVKVLKAPKFDITKLMEVHGD-YSEEVGAKIERPAAA 249          
BLAST of CX300757 vs. ExPASy Swiss-Prot
Match: RS3A_TOBAC (40S ribosomal protein S3a OS=Nicotiana tabacum GN=cyc07 PE=2 SV=1)

HSP 1 Score: 219.164 bits (557), Expect = 1.650e-56
Identity = 117/173 (67.63%), Postives = 133/173 (76.88%), Query Frame = 1
Query:    1 LVAEDVQGTNVLTNFHGMDITRDKLCSLIRKWQTLIEASVDVRTTDGYVLRLFAIAFTKKQQNQAARSTCYAQSGQVRNIRKKMFEIMTEEASKCDLKELVQKFIAHPDSIGAEIEKKCQSIFPLQNVLIRKVKMLKKPKFDVTKLMELHGDTTAEDSGVAIDKAAAANTVKA 519
            L AEDVQG NVLTNF GMD T DKL SL++KWQTLIEA VDV+TTD Y LR+F IAFTKK+ NQ  R TCYAQS Q+R IR+KM EIM  +AS CDLKELV KFI  P+SIG EIEK   SIFPLQNV IRKVK+LK PKFD+ KLME+HGD  +ED GV +D+ A     +A
Sbjct:   86 LRAEDVQGKNVLTNFWGMDFTTDKLRSLVKKWQTLIEAHVDVKTTDSYTLRMFCIAFTKKRPNQQKR-TCYAQSSQIRQIRRKMVEIMRNQASSCDLKELVAKFI--PESIGREIEKATSSIFPLQNVYIRKVKILKAPKFDIGKLMEVHGD-YSEDVGVKLDRPADETVAEA 254          
BLAST of CX300757 vs. ExPASy Swiss-Prot
Match: RS3A_BRARA (40S ribosomal protein S3a OS=Brassica rapa GN=RPS3A PE=2 SV=2)

HSP 1 Score: 218.009 bits (554), Expect = 3.676e-56
Identity = 116/167 (69.46%), Postives = 131/167 (78.44%), Query Frame = 1
Query:    1 LVAEDVQGTNVLTNFHGMDITRDKLCSLIRKWQTLIEASVDVRTTDGYVLRLFAIAFTKKQQNQAARSTCYAQSGQVRNIRKKMFEIM-TEEASKCDLKELVQKFIAHPDSIGAEIEKKCQSIFPLQNVLIRKVKMLKKPKFDVTKLMELHGDTTAEDSGVAIDKAA 498
            L AEDVQG NVLT F GMD T DKL SL++KWQTLIE+ VDV+TTD Y LRLF IAFTK++ NQ  R TCYAQS Q+R IR KM EIM  EEAS CDLKELV KFI  P+SIG +IEK  Q I+PLQNV IRKVK+LK PKFD+ KLME+HGD TAED GV +D+ A
Sbjct:   86 LRAEDVQGRNVLTQFWGMDFTTDKLRSLVKKWQTLIESHVDVKTTDNYTLRLFCIAFTKRRANQVKR-TCYAQSSQIRQIRSKMREIMIKEEASSCDLKELVAKFI--PESIGKDIEKATQGIYPLQNVFIRKVKILKAPKFDLRKLMEVHGDYTAEDVGVKVDRPA 249          
BLAST of CX300757 vs. ExPASy Swiss-Prot
Match: RS3A_RAT (40S ribosomal protein S3a OS=Rattus norvegicus GN=Rps3a PE=1 SV=2)

HSP 1 Score: 217.238 bits (552), Expect = 6.270e-56
Identity = 108/171 (63.16%), Postives = 133/171 (77.78%), Query Frame = 1
Query:    1 LVAEDVQGTNVLTNFHGMDITRDKLCSLIRKWQTLIEASVDVRTTDGYVLRLFAIAFTKKQQNQAARSTCYAQSGQVRNIRKKMFEIMTEEASKCDLKELVQKFIAHPDSIGAEIEKKCQSIFPLQNVLIRKVKMLKKPKFDVTKLMELHGD------TTAEDSGVAIDKA 495
            L+ EDVQG N LTNFHGMD+TRDK+CS+++KWQT+IEA VDV+TTDGY+LRLF + FTKK+ NQ  R T YAQ  QVR IRKKM EIMT E    DLKE+V K I  PDSIG +IEK CQSI+PL +V +RKVKMLKKPKF++ KLMELHG+      TT +++G  +++A
Sbjct:   86 LITEDVQGKNCLTNFHGMDLTRDKMCSMVKKWQTMIEAHVDVKTTDGYLLRLFCVGFTKKRNNQ-IRKTSYAQHQQVRQIRKKMMEIMTREVQTNDLKEVVNKLI--PDSIGKDIEKACQSIYPLHDVFVRKVKMLKKPKFELGKLMELHGEGGSSGKTTGDETGAKVERA 253          
BLAST of CX300757 vs. ExPASy Swiss-Prot
Match: RS3A_LENED (40S ribosomal protein S1 OS=Lentinula edodes GN=RPS1 PE=2 SV=1)

HSP 1 Score: 217.238 bits (552), Expect = 6.270e-56
Identity = 112/164 (68.29%), Postives = 133/164 (81.10%), Query Frame = 1
Query:    1 LVAEDVQGTNVLTNFHGMDITRDKLCSLIRKWQTLIEASVDVRTTDGYVLRLFAIAFTKKQQNQAARSTCYAQSGQVRNIRKKMFEIMTEEASKCDLKELVQKFIAHPDSIGAEIEKKCQSIFPLQNVLIRKVKMLKKPKFDVTKLMELHGDTTAEDSGVAIDK 492
            L  ++VQG N LTNFHGMD T DKL SL+RKWQTLIEA VDV+TTDGY+LRLFAI FTK++  Q  R T YAQS QVR IRKKMFEIMT EA+ CDLKELVQKF+  P++IG EIEK  +SI+PLQNV +RK K+LK PKFDV+KLMELHG++T +++G  I K
Sbjct:   86 LRVDEVQGKNCLTNFHGMDFTSDKLRSLVRKWQTLIEAHVDVKTTDGYLLRLFAIGFTKRRPTQ-VRKTTYAQSSQVREIRKKMFEIMTREATNCDLKELVQKFV--PEAIGREIEKASRSIYPLQNVYVRKAKILKAPKFDVSKLMELHGEST-DETGTKIAK 245          
BLAST of CX300757 vs. ExPASy Swiss-Prot
Match: RS3A_DAUCA (40S ribosomal protein S3a OS=Daucus carota GN=cyc07 PE=2 SV=1)

HSP 1 Score: 217.238 bits (552), Expect = 6.270e-56
Identity = 114/164 (69.51%), Postives = 130/164 (79.27%), Query Frame = 1
Query:    1 LVAEDVQGTNVLTNFHGMDITRDKLCSLIRKWQTLIEASVDVRTTDGYVLRLFAIAFTKKQQNQAARSTCYAQSGQVRNIRKKMFEIMTEEASKCDLKELVQKFIAHPDSIGAEIEKKCQSIFPLQNVLIRKVKMLKKPKFDVTKLMELHGDTTAEDSGVAIDK 492
            L AEDVQG NVLTNF+GMD T DKL SL+RKWQTLIEA VDV+TTD Y LR+F I FTKK+ NQ  R TCYAQS Q+R IR+KM EIM  +AS CDLKELV KFI  P+SIG EIEK   SIFPLQNV IRKVK+LK PKFD+ KLME+HGD  +ED GV +++
Sbjct:   86 LRAEDVQGKNVLTNFYGMDFTTDKLRSLVRKWQTLIEAHVDVKTTDSYTLRMFCIGFTKKRANQQKR-TCYAQSSQIRQIRRKMVEIMRNQASSCDLKELVAKFI--PESIGREIEKATSSIFPLQNVFIRKVKILKAPKFDIGKLMEVHGD-YSEDVGVKLER 245          
BLAST of CX300757 vs. ExPASy Swiss-Prot
Match: RS3A_LACBS (40S ribosomal protein S1 OS=Laccaria bicolor (strain S238N-H82) GN=RPS1 PE=3 SV=2)

HSP 1 Score: 216.468 bits (550), Expect = 1.069e-55
Identity = 108/161 (67.08%), Postives = 133/161 (82.61%), Query Frame = 1
Query:   10 EDVQGTNVLTNFHGMDITRDKLCSLIRKWQTLIEASVDVRTTDGYVLRLFAIAFTKKQQNQAARSTCYAQSGQVRNIRKKMFEIMTEEASKCDLKELVQKFIAHPDSIGAEIEKKCQSIFPLQNVLIRKVKMLKKPKFDVTKLMELHGDTTAEDSGVAIDK 492
            +++QG N LTNFHGMD T DKL SL+RKWQTL+EA VDV+TTDGY+LRLFAI FTK++ +Q  R T YAQS QVR IRKKMFEIMT EA+ CDLKELVQKF+  P++IG EIEK  +SI+PLQNV +RK K+LK PKFD++KL+ELHGD+T +++G  I K
Sbjct:   89 DEIQGKNCLTNFHGMDFTSDKLRSLVRKWQTLVEAHVDVKTTDGYLLRLFAIGFTKRRPSQ-VRKTTYAQSSQVREIRKKMFEIMTREATNCDLKELVQKFV--PEAIGREIEKAARSIYPLQNVYVRKAKILKSPKFDMSKLLELHGDST-DETGTRIAK 245          
BLAST of CX300757 vs. ExPASy Swiss-Prot
Match: RS3A_ORYSJ (40S ribosomal protein S3a OS=Oryza sativa subsp. japonica GN=RPS3A PE=2 SV=2)

HSP 1 Score: 216.083 bits (549), Expect = 1.397e-55
Identity = 111/166 (66.87%), Postives = 128/166 (77.11%), Query Frame = 1
Query:    1 LVAEDVQGTNVLTNFHGMDITRDKLCSLIRKWQTLIEASVDVRTTDGYVLRLFAIAFTKKQQNQAARSTCYAQSGQVRNIRKKMFEIMTEEASKCDLKELVQKFIAHPDSIGAEIEKKCQSIFPLQNVLIRKVKMLKKPKFDVTKLMELHGDTTAEDSGVAIDKAA 498
            L AEDVQG NVLTNF GM  T DKL SL++KWQTLIEA VDV+TTDGY+LRLF I FTK++ NQ  R TCYAQ+ Q+R IR+KM EIM  +AS CDLKELV KFI  P+ IG EIEK   SIFPLQNV +RKVK+LK PKFD+ KLME+HGD   ED G  +D+ A
Sbjct:   86 LRAEDVQGKNVLTNFWGMSFTTDKLRSLVKKWQTLIEAHVDVKTTDGYMLRLFCIGFTKRRPNQVKR-TCYAQASQIRQIRRKMVEIMANQASSCDLKELVSKFI--PEVIGKEIEKATSSIFPLQNVFVRKVKILKAPKFDLGKLMEVHGDYAKEDIGTKLDRPA 248          
BLAST of CX300757 vs. ExPASy Swiss-Prot
Match: RS3A_MACFA (40S ribosomal protein S3a OS=Macaca fascicularis GN=RPS3A PE=2 SV=3)

HSP 1 Score: 215.312 bits (547), Expect = 2.383e-55
Identity = 107/171 (62.57%), Postives = 132/171 (77.19%), Query Frame = 1
Query:    1 LVAEDVQGTNVLTNFHGMDITRDKLCSLIRKWQTLIEASVDVRTTDGYVLRLFAIAFTKKQQNQAARSTCYAQSGQVRNIRKKMFEIMTEEASKCDLKELVQKFIAHPDSIGAEIEKKCQSIFPLQNVLIRKVKMLKKPKFDVTKLMELHGD------TTAEDSGVAIDKA 495
            L+ EDVQG N LTNFHGMD+TRDK+CS+++KWQT+IEA VDV+TTDGY+LRLF + FTKK+ NQ  R T YAQ  QVR IRKKM EIMT E    DLKE+V K I  PDSIG +IEK CQSI+PL +V +RKVKMLKKPKF++ KLMELHG+       T +++G  +++A
Sbjct:   86 LITEDVQGKNCLTNFHGMDLTRDKMCSMVKKWQTMIEAHVDVKTTDGYLLRLFCVGFTKKRNNQ-IRKTSYAQHQQVRQIRKKMMEIMTREVQTNDLKEVVNKLI--PDSIGKDIEKACQSIYPLHDVFVRKVKMLKKPKFELGKLMELHGEGSSSGKATGDETGAKVERA 253          
The following BLAST results are available for this feature:
BLAST of CX300757 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 181
Match NameE-valueIdentityDescription
RS3A2_ARATH2.302e-5868.0240S ribosomal protein S3a-2 OS=Arabidopsis thalian... [more]
RS3A_CHLRE1.949e-5768.4540S ribosomal protein S3a OS=Chlamydomonas reinhar... [more]
RS3A_TOBAC1.650e-5667.6340S ribosomal protein S3a OS=Nicotiana tabacum GN=... [more]
RS3A_BRARA3.676e-5669.4640S ribosomal protein S3a OS=Brassica rapa GN=RPS3... [more]
RS3A_RAT6.270e-5663.1640S ribosomal protein S3a OS=Rattus norvegicus GN=... [more]
RS3A_LENED6.270e-5668.2940S ribosomal protein S1 OS=Lentinula edodes GN=RP... [more]
RS3A_DAUCA6.270e-5669.5140S ribosomal protein S3a OS=Daucus carota GN=cyc0... [more]
RS3A_LACBS1.069e-5567.0840S ribosomal protein S1 OS=Laccaria bicolor (stra... [more]
RS3A_ORYSJ1.397e-5566.8740S ribosomal protein S3a OS=Oryza sativa subsp. j... [more]
RS3A_MACFA2.383e-5562.5740S ribosomal protein S3a OS=Macaca fascicularis G... [more]

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Properties
Property NameValue
Genbank descriptionC08001H07SK PhyRootSw1 Citrus sinensis cDNA clone C08001H07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX300757 ID=CX300757; Name=CX300757; organism=Citrus sinensis; type=EST; length=681bp
CTCGTCGCTGAGGATGTTCAAGGCACCAATGTCTTGACCAACTTCCATGG
CATGGATATCACCCGTGATAAATTATGCTCTTTAATCCGCAAATGGCAGA
CTTTAATCGAGGCTAGCGTCGACGTCCGAACAACTGACGGATATGTCTTA
AGACTCTTCGCCATCGCCTTCACCAAGAAACAACAGAACCAAGCTGCTCG
CTCCACTTGCTATGCTCAATCTGGTCAAGTCAGAAATATCCGCAAGAAGA
TGTTCGAGATCATGACAGAGGAAGCTTCCAAGTGCGACTTAAAGGAACTT
GTTCAGAAATTCATCGCTCACCCTGACTCCATCGGTGCTGAGATCGAGAA
GAAGTGTCAATCCATCTTCCCTCTTCAAAACGTCCTCATCCGCAAGGTGA
AGATGTTGAAGAAGCCAAAGTTCGATGTGACAAAGTTAATGGAATTACAC
GGTGACACCACCGCTGAGGACAGTGGCGTGGCTATTGATAAGGCCGCCGC
TGCTAACACTGTCAAGGCTTTGAAGGGATCTGGAGGCAGATTGTAAGTGA
GATTGATGATATAAACGACACCTTCTCCACATCATCGCTCTATTTGTTGG
TACTACGATTCAATAACAATACTTCCACAACTAATAAAACTAATAACAAA
AAACCTCATAAAAAAAAAAAAAAAAAAAAAA
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