CX300757
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CX300757 vs. ExPASy Swiss-Prot
Match: RS3A2_ARATH (40S ribosomal protein S3a-2 OS=Arabidopsis thaliana GN=RPS3AB PE=2 SV=3) HSP 1 Score: 225.328 bits (573), Expect = 2.302e-58 Identity = 117/172 (68.02%), Postives = 135/172 (78.49%), Query Frame = 1 Query: 1 LVAEDVQGTNVLTNFHGMDITRDKLCSLIRKWQTLIEASVDVRTTDGYVLRLFAIAFTKKQQNQAARSTCYAQSGQVRNIRKKMFEIMTEEASKCDLKELVQKFIAHPDSIGAEIEKKCQSIFPLQNVLIRKVKMLKKPKFDVTKLMELHGDTTAEDSGVAIDKAAAANTVK 516 L AEDVQG NVLT F GMD T DKL SL++KWQTLIEA VDV+TTDGY LR+F IAFTK++ NQ R TCYAQS Q+R IR+KM EIM +EAS CDLKELV KFI P++IG EIEK Q I+PLQNV IRKVK+LK PKFD+ KLME+HGD TAED GV +D+ A V+ Sbjct: 86 LRAEDVQGRNVLTQFWGMDFTTDKLRSLVKKWQTLIEAHVDVKTTDGYTLRMFCIAFTKRRANQVKR-TCYAQSSQIRQIRRKMSEIMVKEASSCDLKELVAKFI--PEAIGREIEKATQGIYPLQNVFIRKVKILKAPKFDLGKLMEVHGDYTAEDVGVKVDRPADETMVE 254
BLAST of CX300757 vs. ExPASy Swiss-Prot
Match: RS3A_CHLRE (40S ribosomal protein S3a OS=Chlamydomonas reinhardtii GN=CHLREDRAFT_168484 PE=3 SV=1) HSP 1 Score: 222.246 bits (565), Expect = 1.949e-57 Identity = 115/168 (68.45%), Postives = 133/168 (79.17%), Query Frame = 1 Query: 1 LVAEDVQGTNVLTNFHGMDITRDKLCSLIRKWQTLIEASVDVRTTDGYVLRLFAIAFTKKQQNQAARSTCYAQSGQVRNIRKKMFEIMTEEASKCDLKELVQKFIAHPDSIGAEIEKKCQSIFPLQNVLIRKVKMLKKPKFDVTKLMELHGDTTAEDSGVAIDKAAAA 504 L EDVQG N LTNF GMD T DKL SL+RKWQTLIEA VDV+TTDGY LR+F I+FTKK+Q Q R TCYAQS Q+R IRKKM EI+T EA+ CDLKELV KFI P+SIG +IEK CQ I+PLQN IRKVK+LK PKFD+TKLME+HGD +E+ G I++ AAA Sbjct: 86 LRVEDVQGRNCLTNFWGMDFTTDKLRSLVRKWQTLIEAHVDVKTTDGYTLRVFCISFTKKRQGQIKR-TCYAQSAQIRQIRKKMMEIITREATSCDLKELVAKFI--PESIGKDIEKSCQGIYPLQNTFIRKVKVLKAPKFDITKLMEVHGD-YSEEVGAKIERPAAA 249
BLAST of CX300757 vs. ExPASy Swiss-Prot
Match: RS3A_TOBAC (40S ribosomal protein S3a OS=Nicotiana tabacum GN=cyc07 PE=2 SV=1) HSP 1 Score: 219.164 bits (557), Expect = 1.650e-56 Identity = 117/173 (67.63%), Postives = 133/173 (76.88%), Query Frame = 1 Query: 1 LVAEDVQGTNVLTNFHGMDITRDKLCSLIRKWQTLIEASVDVRTTDGYVLRLFAIAFTKKQQNQAARSTCYAQSGQVRNIRKKMFEIMTEEASKCDLKELVQKFIAHPDSIGAEIEKKCQSIFPLQNVLIRKVKMLKKPKFDVTKLMELHGDTTAEDSGVAIDKAAAANTVKA 519 L AEDVQG NVLTNF GMD T DKL SL++KWQTLIEA VDV+TTD Y LR+F IAFTKK+ NQ R TCYAQS Q+R IR+KM EIM +AS CDLKELV KFI P+SIG EIEK SIFPLQNV IRKVK+LK PKFD+ KLME+HGD +ED GV +D+ A +A Sbjct: 86 LRAEDVQGKNVLTNFWGMDFTTDKLRSLVKKWQTLIEAHVDVKTTDSYTLRMFCIAFTKKRPNQQKR-TCYAQSSQIRQIRRKMVEIMRNQASSCDLKELVAKFI--PESIGREIEKATSSIFPLQNVYIRKVKILKAPKFDIGKLMEVHGD-YSEDVGVKLDRPADETVAEA 254
BLAST of CX300757 vs. ExPASy Swiss-Prot
Match: RS3A_BRARA (40S ribosomal protein S3a OS=Brassica rapa GN=RPS3A PE=2 SV=2) HSP 1 Score: 218.009 bits (554), Expect = 3.676e-56 Identity = 116/167 (69.46%), Postives = 131/167 (78.44%), Query Frame = 1 Query: 1 LVAEDVQGTNVLTNFHGMDITRDKLCSLIRKWQTLIEASVDVRTTDGYVLRLFAIAFTKKQQNQAARSTCYAQSGQVRNIRKKMFEIM-TEEASKCDLKELVQKFIAHPDSIGAEIEKKCQSIFPLQNVLIRKVKMLKKPKFDVTKLMELHGDTTAEDSGVAIDKAA 498 L AEDVQG NVLT F GMD T DKL SL++KWQTLIE+ VDV+TTD Y LRLF IAFTK++ NQ R TCYAQS Q+R IR KM EIM EEAS CDLKELV KFI P+SIG +IEK Q I+PLQNV IRKVK+LK PKFD+ KLME+HGD TAED GV +D+ A Sbjct: 86 LRAEDVQGRNVLTQFWGMDFTTDKLRSLVKKWQTLIESHVDVKTTDNYTLRLFCIAFTKRRANQVKR-TCYAQSSQIRQIRSKMREIMIKEEASSCDLKELVAKFI--PESIGKDIEKATQGIYPLQNVFIRKVKILKAPKFDLRKLMEVHGDYTAEDVGVKVDRPA 249
BLAST of CX300757 vs. ExPASy Swiss-Prot
Match: RS3A_RAT (40S ribosomal protein S3a OS=Rattus norvegicus GN=Rps3a PE=1 SV=2) HSP 1 Score: 217.238 bits (552), Expect = 6.270e-56 Identity = 108/171 (63.16%), Postives = 133/171 (77.78%), Query Frame = 1 Query: 1 LVAEDVQGTNVLTNFHGMDITRDKLCSLIRKWQTLIEASVDVRTTDGYVLRLFAIAFTKKQQNQAARSTCYAQSGQVRNIRKKMFEIMTEEASKCDLKELVQKFIAHPDSIGAEIEKKCQSIFPLQNVLIRKVKMLKKPKFDVTKLMELHGD------TTAEDSGVAIDKA 495 L+ EDVQG N LTNFHGMD+TRDK+CS+++KWQT+IEA VDV+TTDGY+LRLF + FTKK+ NQ R T YAQ QVR IRKKM EIMT E DLKE+V K I PDSIG +IEK CQSI+PL +V +RKVKMLKKPKF++ KLMELHG+ TT +++G +++A Sbjct: 86 LITEDVQGKNCLTNFHGMDLTRDKMCSMVKKWQTMIEAHVDVKTTDGYLLRLFCVGFTKKRNNQ-IRKTSYAQHQQVRQIRKKMMEIMTREVQTNDLKEVVNKLI--PDSIGKDIEKACQSIYPLHDVFVRKVKMLKKPKFELGKLMELHGEGGSSGKTTGDETGAKVERA 253
BLAST of CX300757 vs. ExPASy Swiss-Prot
Match: RS3A_LENED (40S ribosomal protein S1 OS=Lentinula edodes GN=RPS1 PE=2 SV=1) HSP 1 Score: 217.238 bits (552), Expect = 6.270e-56 Identity = 112/164 (68.29%), Postives = 133/164 (81.10%), Query Frame = 1 Query: 1 LVAEDVQGTNVLTNFHGMDITRDKLCSLIRKWQTLIEASVDVRTTDGYVLRLFAIAFTKKQQNQAARSTCYAQSGQVRNIRKKMFEIMTEEASKCDLKELVQKFIAHPDSIGAEIEKKCQSIFPLQNVLIRKVKMLKKPKFDVTKLMELHGDTTAEDSGVAIDK 492 L ++VQG N LTNFHGMD T DKL SL+RKWQTLIEA VDV+TTDGY+LRLFAI FTK++ Q R T YAQS QVR IRKKMFEIMT EA+ CDLKELVQKF+ P++IG EIEK +SI+PLQNV +RK K+LK PKFDV+KLMELHG++T +++G I K Sbjct: 86 LRVDEVQGKNCLTNFHGMDFTSDKLRSLVRKWQTLIEAHVDVKTTDGYLLRLFAIGFTKRRPTQ-VRKTTYAQSSQVREIRKKMFEIMTREATNCDLKELVQKFV--PEAIGREIEKASRSIYPLQNVYVRKAKILKAPKFDVSKLMELHGEST-DETGTKIAK 245
BLAST of CX300757 vs. ExPASy Swiss-Prot
Match: RS3A_DAUCA (40S ribosomal protein S3a OS=Daucus carota GN=cyc07 PE=2 SV=1) HSP 1 Score: 217.238 bits (552), Expect = 6.270e-56 Identity = 114/164 (69.51%), Postives = 130/164 (79.27%), Query Frame = 1 Query: 1 LVAEDVQGTNVLTNFHGMDITRDKLCSLIRKWQTLIEASVDVRTTDGYVLRLFAIAFTKKQQNQAARSTCYAQSGQVRNIRKKMFEIMTEEASKCDLKELVQKFIAHPDSIGAEIEKKCQSIFPLQNVLIRKVKMLKKPKFDVTKLMELHGDTTAEDSGVAIDK 492 L AEDVQG NVLTNF+GMD T DKL SL+RKWQTLIEA VDV+TTD Y LR+F I FTKK+ NQ R TCYAQS Q+R IR+KM EIM +AS CDLKELV KFI P+SIG EIEK SIFPLQNV IRKVK+LK PKFD+ KLME+HGD +ED GV +++ Sbjct: 86 LRAEDVQGKNVLTNFYGMDFTTDKLRSLVRKWQTLIEAHVDVKTTDSYTLRMFCIGFTKKRANQQKR-TCYAQSSQIRQIRRKMVEIMRNQASSCDLKELVAKFI--PESIGREIEKATSSIFPLQNVFIRKVKILKAPKFDIGKLMEVHGD-YSEDVGVKLER 245
BLAST of CX300757 vs. ExPASy Swiss-Prot
Match: RS3A_LACBS (40S ribosomal protein S1 OS=Laccaria bicolor (strain S238N-H82) GN=RPS1 PE=3 SV=2) HSP 1 Score: 216.468 bits (550), Expect = 1.069e-55 Identity = 108/161 (67.08%), Postives = 133/161 (82.61%), Query Frame = 1 Query: 10 EDVQGTNVLTNFHGMDITRDKLCSLIRKWQTLIEASVDVRTTDGYVLRLFAIAFTKKQQNQAARSTCYAQSGQVRNIRKKMFEIMTEEASKCDLKELVQKFIAHPDSIGAEIEKKCQSIFPLQNVLIRKVKMLKKPKFDVTKLMELHGDTTAEDSGVAIDK 492 +++QG N LTNFHGMD T DKL SL+RKWQTL+EA VDV+TTDGY+LRLFAI FTK++ +Q R T YAQS QVR IRKKMFEIMT EA+ CDLKELVQKF+ P++IG EIEK +SI+PLQNV +RK K+LK PKFD++KL+ELHGD+T +++G I K Sbjct: 89 DEIQGKNCLTNFHGMDFTSDKLRSLVRKWQTLVEAHVDVKTTDGYLLRLFAIGFTKRRPSQ-VRKTTYAQSSQVREIRKKMFEIMTREATNCDLKELVQKFV--PEAIGREIEKAARSIYPLQNVYVRKAKILKSPKFDMSKLLELHGDST-DETGTRIAK 245
BLAST of CX300757 vs. ExPASy Swiss-Prot
Match: RS3A_ORYSJ (40S ribosomal protein S3a OS=Oryza sativa subsp. japonica GN=RPS3A PE=2 SV=2) HSP 1 Score: 216.083 bits (549), Expect = 1.397e-55 Identity = 111/166 (66.87%), Postives = 128/166 (77.11%), Query Frame = 1 Query: 1 LVAEDVQGTNVLTNFHGMDITRDKLCSLIRKWQTLIEASVDVRTTDGYVLRLFAIAFTKKQQNQAARSTCYAQSGQVRNIRKKMFEIMTEEASKCDLKELVQKFIAHPDSIGAEIEKKCQSIFPLQNVLIRKVKMLKKPKFDVTKLMELHGDTTAEDSGVAIDKAA 498 L AEDVQG NVLTNF GM T DKL SL++KWQTLIEA VDV+TTDGY+LRLF I FTK++ NQ R TCYAQ+ Q+R IR+KM EIM +AS CDLKELV KFI P+ IG EIEK SIFPLQNV +RKVK+LK PKFD+ KLME+HGD ED G +D+ A Sbjct: 86 LRAEDVQGKNVLTNFWGMSFTTDKLRSLVKKWQTLIEAHVDVKTTDGYMLRLFCIGFTKRRPNQVKR-TCYAQASQIRQIRRKMVEIMANQASSCDLKELVSKFI--PEVIGKEIEKATSSIFPLQNVFVRKVKILKAPKFDLGKLMEVHGDYAKEDIGTKLDRPA 248
BLAST of CX300757 vs. ExPASy Swiss-Prot
Match: RS3A_MACFA (40S ribosomal protein S3a OS=Macaca fascicularis GN=RPS3A PE=2 SV=3) HSP 1 Score: 215.312 bits (547), Expect = 2.383e-55 Identity = 107/171 (62.57%), Postives = 132/171 (77.19%), Query Frame = 1 Query: 1 LVAEDVQGTNVLTNFHGMDITRDKLCSLIRKWQTLIEASVDVRTTDGYVLRLFAIAFTKKQQNQAARSTCYAQSGQVRNIRKKMFEIMTEEASKCDLKELVQKFIAHPDSIGAEIEKKCQSIFPLQNVLIRKVKMLKKPKFDVTKLMELHGD------TTAEDSGVAIDKA 495 L+ EDVQG N LTNFHGMD+TRDK+CS+++KWQT+IEA VDV+TTDGY+LRLF + FTKK+ NQ R T YAQ QVR IRKKM EIMT E DLKE+V K I PDSIG +IEK CQSI+PL +V +RKVKMLKKPKF++ KLMELHG+ T +++G +++A Sbjct: 86 LITEDVQGKNCLTNFHGMDLTRDKMCSMVKKWQTMIEAHVDVKTTDGYLLRLFCVGFTKKRNNQ-IRKTSYAQHQQVRQIRKKMMEIMTREVQTNDLKEVVNKLI--PDSIGKDIEKACQSIYPLHDVFVRKVKMLKKPKFELGKLMELHGEGSSSGKATGDETGAKVERA 253 The following BLAST results are available for this feature:
BLAST of CX300757 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 181
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Sequences
The
following sequences are available for this feature:
EST sequence >CX300757 ID=CX300757; Name=CX300757; organism=Citrus sinensis; type=EST; length=681bpback to top |