CX300756

Overview
NameCX300756
Unique NameCX300756
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length598
Libraries
Library NameType
PhyRootSw1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX300756 vs. ExPASy Swiss-Prot
Match: UBC2_WHEAT (Ubiquitin-conjugating enzyme E2 2 OS=Triticum aestivum GN=UBC2 PE=1 SV=1)

HSP 1 Score: 123.25 bits (308), Expect = 9.482e-28
Identity = 57/57 (100.00%), Postives = 57/57 (100.00%), Query Frame = 3
Query:  426 GTFKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILT 596
            GTFKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILT
Sbjct:   51 GTFKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILT 107          
BLAST of CX300756 vs. ExPASy Swiss-Prot
Match: UBC2_MEDSA (Ubiquitin-conjugating enzyme E2 2 OS=Medicago sativa GN=UBC2 PE=2 SV=1)

HSP 1 Score: 120.168 bits (300), Expect = 8.027e-27
Identity = 55/57 (96.49%), Postives = 57/57 (100.00%), Query Frame = 3
Query:  426 GTFKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILT 596
            GTFKL+LQF+EDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILT
Sbjct:   51 GTFKLSLQFSEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILT 107          
BLAST of CX300756 vs. ExPASy Swiss-Prot
Match: UBC2_ARATH (Ubiquitin-conjugating enzyme E2 2 OS=Arabidopsis thaliana GN=UBC2 PE=2 SV=1)

HSP 1 Score: 120.168 bits (300), Expect = 8.027e-27
Identity = 55/57 (96.49%), Postives = 57/57 (100.00%), Query Frame = 3
Query:  426 GTFKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILT 596
            GTFKL+LQF+EDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILT
Sbjct:   51 GTFKLSLQFSEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILT 107          
BLAST of CX300756 vs. ExPASy Swiss-Prot
Match: UBC1_ARATH (Ubiquitin-conjugating enzyme E2 1 OS=Arabidopsis thaliana GN=UBC1 PE=1 SV=1)

HSP 1 Score: 120.168 bits (300), Expect = 8.027e-27
Identity = 55/57 (96.49%), Postives = 57/57 (100.00%), Query Frame = 3
Query:  426 GTFKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILT 596
            GTFKL+LQF+EDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILT
Sbjct:   51 GTFKLSLQFSEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILT 107          
BLAST of CX300756 vs. ExPASy Swiss-Prot
Match: UBC3_ARATH (Ubiquitin-conjugating enzyme E2 3 OS=Arabidopsis thaliana GN=UBC3 PE=2 SV=1)

HSP 1 Score: 118.627 bits (296), Expect = 2.336e-26
Identity = 54/57 (94.74%), Postives = 55/57 (96.49%), Query Frame = 3
Query:  426 GTFKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILT 596
            GTFKLTL FTEDYPNKPP VRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAA+LT
Sbjct:   51 GTFKLTLHFTEDYPNKPPIVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAVLT 107          
BLAST of CX300756 vs. ExPASy Swiss-Prot
Match: UBE2A_MOUSE (Ubiquitin-conjugating enzyme E2 A OS=Mus musculus GN=Ube2a PE=2 SV=1)

HSP 1 Score: 112.464 bits (280), Expect = 1.674e-24
Identity = 48/57 (84.21%), Postives = 56/57 (98.25%), Query Frame = 3
Query:  426 GTFKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILT 596
            GTFKLT++FTE+YPNKPPTVRFVS+MFHPN+YADGSICLDILQN+WSP YDV++ILT
Sbjct:   51 GTFKLTIEFTEEYPNKPPTVRFVSKMFHPNVYADGSICLDILQNRWSPTYDVSSILT 107          
BLAST of CX300756 vs. ExPASy Swiss-Prot
Match: UBE2A_HUMAN (Ubiquitin-conjugating enzyme E2 A OS=Homo sapiens GN=UBE2A PE=2 SV=2)

HSP 1 Score: 112.464 bits (280), Expect = 1.674e-24
Identity = 48/57 (84.21%), Postives = 56/57 (98.25%), Query Frame = 3
Query:  426 GTFKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILT 596
            GTFKLT++FTE+YPNKPPTVRFVS+MFHPN+YADGSICLDILQN+WSP YDV++ILT
Sbjct:   51 GTFKLTIEFTEEYPNKPPTVRFVSKMFHPNVYADGSICLDILQNRWSPTYDVSSILT 107          
BLAST of CX300756 vs. ExPASy Swiss-Prot
Match: UBC1_CAEEL (Ubiquitin-conjugating enzyme E2 1 OS=Caenorhabditis elegans GN=ubc-1 PE=1 SV=1)

HSP 1 Score: 112.464 bits (280), Expect = 1.674e-24
Identity = 48/57 (84.21%), Postives = 56/57 (98.25%), Query Frame = 3
Query:  426 GTFKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILT 596
            GTFKL+L+FTE+YPNKPPTV+F+S+MFHPN+YADGSICLDILQN+WSP YDVAAILT
Sbjct:   51 GTFKLSLEFTEEYPNKPPTVKFISKMFHPNVYADGSICLDILQNRWSPTYDVAAILT 107          
BLAST of CX300756 vs. ExPASy Swiss-Prot
Match: UBCD6_DROME (Ubiquitin-conjugating enzyme E2-17 kDa OS=Drosophila melanogaster GN=UbcD6 PE=2 SV=2)

HSP 1 Score: 110.538 bits (275), Expect = 6.360e-24
Identity = 47/57 (82.46%), Postives = 55/57 (96.49%), Query Frame = 3
Query:  426 GTFKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILT 596
            GTFKLT++FTE+YPNKPPTVRFVS++FHPN+YADG ICLDILQN+WSP YDV+AILT
Sbjct:   51 GTFKLTIEFTEEYPNKPPTVRFVSKVFHPNVYADGGICLDILQNRWSPTYDVSAILT 107          
BLAST of CX300756 vs. ExPASy Swiss-Prot
Match: UBE2B_RAT (Ubiquitin-conjugating enzyme E2 B OS=Rattus norvegicus GN=Ube2b PE=2 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 4.123e-23
Identity = 45/57 (78.95%), Postives = 55/57 (96.49%), Query Frame = 3
Query:  426 GTFKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILT 596
            GTFKL ++F+E+YPNKPPTVRF+S+MFHPN+YADGSICLDILQN+WSP YDV++ILT
Sbjct:   51 GTFKLVIEFSEEYPNKPPTVRFLSKMFHPNVYADGSICLDILQNRWSPTYDVSSILT 107          
The following BLAST results are available for this feature:
BLAST of CX300756 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 75
Match NameE-valueIdentityDescription
UBC2_WHEAT9.482e-28100.00Ubiquitin-conjugating enzyme E2 2 OS=Triticum aest... [more]
UBC2_MEDSA8.027e-2796.49Ubiquitin-conjugating enzyme E2 2 OS=Medicago sati... [more]
UBC2_ARATH8.027e-2796.49Ubiquitin-conjugating enzyme E2 2 OS=Arabidopsis t... [more]
UBC1_ARATH8.027e-2796.49Ubiquitin-conjugating enzyme E2 1 OS=Arabidopsis t... [more]
UBC3_ARATH2.336e-2694.74Ubiquitin-conjugating enzyme E2 3 OS=Arabidopsis t... [more]
UBE2A_MOUSE1.674e-2484.21Ubiquitin-conjugating enzyme E2 A OS=Mus musculus ... [more]
UBE2A_HUMAN1.674e-2484.21Ubiquitin-conjugating enzyme E2 A OS=Homo sapiens ... [more]
UBC1_CAEEL1.674e-2484.21Ubiquitin-conjugating enzyme E2 1 OS=Caenorhabditi... [more]
UBCD6_DROME6.360e-2482.46Ubiquitin-conjugating enzyme E2-17 kDa OS=Drosophi... [more]
UBE2B_RAT4.123e-2378.95Ubiquitin-conjugating enzyme E2 B OS=Rattus norveg... [more]

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Properties
Property NameValue
Genbank descriptionC08001H06SK PhyRootSw1 Citrus sinensis cDNA clone C08001H06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX300756 ID=CX300756; Name=CX300756; organism=Citrus sinensis; type=EST; length=598bp
ATTTGGTGATGTTTCGTAGGCCTGATGATACTCCCTGGGACGGAGGTGGG
TATTTGATTATCTTTGATTTTTACAAAATATTTATGCTTTTAATTTTACT
TTCATTCAGCTGTAAAAATGTAAAACTTTTGTTAAGCTGAATTATTGGTT
TTGCCTAATATTTGATTGTAGCTTATTTTTGTTGAATTTTTGTTACCTAA
TCGTGGACAATCTGCTTCTGTAATTAATCATATGTTAGGTTGTATGTTAT
GGTATACTTGCTTTGATTTACATTGTAGGCTTAAAATAAAGACTCCCACT
AAACCGGAACCACCATTAAGTAACATGATTGCCTATGACTTATCATATTT
CGTTATAGCGTCTCTTTTTCTTGAAAGTTATAGGTTTTTGCAAGTGTTGT
TTTAGCTATTTCTTGAACTTTTCCAGGTACGTTCAAGTTGACTCTTCAGT
TTACAGAGGATTATCCGAATAAACCTCCAACAGTTCGGTTCGTTTCACGG
ATGTTTCATCCAAATATCTATGCGGATGGAAGTATCTGCCTGGATATATT
ACAAAATCAGTGGAGTCCTATATATGATGTTGCAGCTATACTGACCTC
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