CX300755

Overview
NameCX300755
Unique NameCX300755
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length540
Libraries
Library NameType
PhyRootSw1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig10664 contig Csv1_Contig10664:753..1292. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX300755 vs. ExPASy Swiss-Prot
Match: SODF_SOYBN (Superoxide dismutase [Fe], chloroplastic OS=Glycine max GN=SODB PE=2 SV=1)

HSP 1 Score: 116.316 bits (290), Expect = 9.231e-26
Identity = 56/73 (76.71%), Postives = 63/73 (86.30%), Query Frame = 2
Query:    5 EKDKSLLVVKTPNAVNPLVWD-YSSLLTIDVWEHAYYLDFQNRRPDYISVFMDKLVSWESVSKRLETAKAPAT 220
            ++D  L+V+K+PNAVNPLVW  Y  LLTIDVWEHAYYLDFQNRRPDYISVFMDKLVSW++VS RLE AKA  T
Sbjct:  174 DEDNKLVVLKSPNAVNPLVWGGYYPLLTIDVWEHAYYLDFQNRRPDYISVFMDKLVSWDAVSSRLEQAKALIT 246          
BLAST of CX300755 vs. ExPASy Swiss-Prot
Match: SODF_NICPL (Superoxide dismutase [Fe], chloroplastic (Fragment) OS=Nicotiana plumbaginifolia GN=SODB PE=2 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 5.065e-24
Identity = 51/68 (75.00%), Postives = 59/68 (86.76%), Query Frame = 2
Query:    8 KDKSLLVVKTPNAVNPLVWDYSSLLTIDVWEHAYYLDFQNRRPDYISVFMDKLVSWESVSKRLETAKA 211
            ++K L +VKTPNA NPLV  Y+ LLTIDVWEHAYYLDFQNRRPDYIS+FM+KLVSWE+VS RL+ A A
Sbjct:  135 EEKKLALVKTPNAENPLVLGYTPLLTIDVWEHAYYLDFQNRRPDYISIFMEKLVSWEAVSSRLKAATA 202          
BLAST of CX300755 vs. ExPASy Swiss-Prot
Match: SODF_ARATH (Superoxide dismutase [Fe], chloroplastic OS=Arabidopsis thaliana GN=SODB PE=1 SV=4)

HSP 1 Score: 104.375 bits (259), Expect = 3.630e-22
Identity = 51/67 (76.12%), Postives = 54/67 (80.60%), Query Frame = 2
Query:   11 DKSLLVVKTPNAVNPLVWDYSSLLTIDVWEHAYYLDFQNRRPDYISVFMDKLVSWESVSKRLETAKA 211
            ++ L VVKTPNAVNPLV     LLTIDVWEHAYYLDFQNRRPDYI  FM  LVSWE+VS RLE AKA
Sbjct:  143 NEKLKVVKTPNAVNPLVLGSFPLLTIDVWEHAYYLDFQNRRPDYIKTFMTNLVSWEAVSARLEAAKA 209          
BLAST of CX300755 vs. ExPASy Swiss-Prot
Match: SODF_RHOCA (Superoxide dismutase [Fe] OS=Rhodobacter capsulatus GN=sodB PE=1 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 3.291e-15
Identity = 33/64 (51.56%), Postives = 50/64 (78.12%), Query Frame = 2
Query:    5 EKDKSLLVVKTPNAVNPLVWDYSSLLTIDVWEHAYYLDFQNRRPDYISVFMDKLVSWESVSKRL 196
            + D +L + KT N VNPL +  ++LL  DVWEH+YY+DF+N+RP Y++ F+DKLV+WE+V+ R+
Sbjct:  137 DSDGALKITKTENGVNPLCFGQTALLGCDVWEHSYYIDFRNKRPAYLTNFLDKLVNWENVASRM 200          
BLAST of CX300755 vs. ExPASy Swiss-Prot
Match: SODF_PLEBO (Superoxide dismutase [Fe] OS=Plectonema boryanum GN=sodB PE=2 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 3.291e-15
Identity = 37/60 (61.67%), Postives = 45/60 (75.00%), Query Frame = 2
Query:   17 SLLVVKTPNAVNPLVWDYSSLLTIDVWEHAYYLDFQNRRPDYISVFMDKLVSWESVSKRL 196
            +L V KTPNA NPLV     LLT+DVWEHAYYLDFQN RP +I  F+D LV+W+ V++ L
Sbjct:  138 TLKVTKTPNAENPLVHGQKPLLTLDVWEHAYYLDFQNARPAFIKNFLDNLVNWDFVAQNL 197          
BLAST of CX300755 vs. ExPASy Swiss-Prot
Match: SODF_SYNY3 (Superoxide dismutase [Fe] OS=Synechocystis sp. (strain PCC 6803) GN=sodB PE=1 SV=3)

HSP 1 Score: 80.8777 bits (198), Expect = 4.298e-15
Identity = 37/63 (58.73%), Postives = 47/63 (74.60%), Query Frame = 2
Query:   17 SLLVVKTPNAVNPLVWDYSSLLTIDVWEHAYYLDFQNRRPDYISVFMDKLVSWESVSKRLETA 205
            +L V KT NA NP+    + LLT+DVWEHAYYLD+QNRRPDYI+ F+ KLV+W+ V+  L  A
Sbjct:  137 TLKVTKTGNAENPMTAGQTPLLTMDVWEHAYYLDYQNRRPDYIADFLGKLVNWDFVAANLAAA 199          
BLAST of CX300755 vs. ExPASy Swiss-Prot
Match: SODF_SYNE7 (Superoxide dismutase [Fe] OS=Synechococcus elongatus (strain PCC 7942) GN=sodB PE=3 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 1.633e-14
Identity = 36/65 (55.38%), Postives = 45/65 (69.23%), Query Frame = 2
Query:   17 SLLVVKTPNAVNPLVWDYSSLLTIDVWEHAYYLDFQNRRPDYISVFMDKLVSWESVSKRLETAKA 211
            +L + KT NA  P+    + LLTIDVWEHAYYLD+QNRRPDYIS F++KL +W+  S     A A
Sbjct:  137 TLKITKTGNADTPIAHGQTPLLTIDVWEHAYYLDYQNRRPDYISTFVEKLANWDFASANYAAAIA 201          
BLAST of CX300755 vs. ExPASy Swiss-Prot
Match: SODF_ANASP (Superoxide dismutase [Fe] OS=Anabaena sp. (strain PCC 7120) GN=sodB PE=3 SV=3)

HSP 1 Score: 73.9442 bits (180), Expect = 5.254e-13
Identity = 31/54 (57.41%), Postives = 41/54 (75.93%), Query Frame = 2
Query:   17 SLLVVKTPNAVNPLVWDYSSLLTIDVWEHAYYLDFQNRRPDYISVFMDKLVSWE 178
            +L V KTPNA NPL     +LLT+DVWEHAYY+DF+N RP +I  ++D LV+W+
Sbjct:  138 TLKVTKTPNAENPLAHGQKALLTLDVWEHAYYIDFRNARPAFIKNYLDNLVNWD 191          
BLAST of CX300755 vs. ExPASy Swiss-Prot
Match: SODF_RHIME (Superoxide dismutase [Mn] OS=Rhizobium meliloti GN=sodB PE=1 SV=3)

HSP 1 Score: 73.559 bits (179), Expect = 6.862e-13
Identity = 31/68 (45.59%), Postives = 46/68 (67.65%), Query Frame = 2
Query:    2 SEKDKSLLVVKTPNAVNPLVWDYSSLLTIDVWEHAYYLDFQNRRPDYISVFMDKLVSWESVSKRLETA 205
            S K+  L + KTPN  NPLV   + +L +DVWEH+YY+D++N RP Y+  F+D L++W+ V +  E A
Sbjct:  131 SVKNGKLEISKTPNGENPLVHGATPILGVDVWEHSYYIDYRNARPKYLEAFVDNLINWDYVLELYEAA 198          
BLAST of CX300755 vs. ExPASy Swiss-Prot
Match: SODM_BACHD (Superoxide dismutase [Mn] OS=Bacillus halodurans GN=sodA PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 8.962e-13
Identity = 34/66 (51.52%), Postives = 46/66 (69.70%), Query Frame = 2
Query:   11 DKSLLVVKTPNAVNPLVWDYSSLLTIDVWEHAYYLDFQNRRPDYISVFMDKLVSWESVSKRLETAK 208
            D  L +  TPN   PL+   + +L +DVWEHAYYL++QNRRPDYIS F + +V+W+ V+KR   AK
Sbjct:  138 DGKLEITSTPNQDTPLMEGKTPILGLDVWEHAYYLNYQNRRPDYISAFWN-VVNWDEVAKRYNEAK 202          
The following BLAST results are available for this feature:
BLAST of CX300755 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 57
Match NameE-valueIdentityDescription
SODF_SOYBN9.231e-2676.71Superoxide dismutase [Fe], chloroplastic OS=Glycin... [more]
SODF_NICPL5.065e-2475.00Superoxide dismutase [Fe], chloroplastic (Fragment... [more]
SODF_ARATH3.630e-2276.12Superoxide dismutase [Fe], chloroplastic OS=Arabid... [more]
SODF_RHOCA3.291e-1551.56Superoxide dismutase [Fe] OS=Rhodobacter capsulatu... [more]
SODF_PLEBO3.291e-1561.67Superoxide dismutase [Fe] OS=Plectonema boryanum G... [more]
SODF_SYNY34.298e-1558.73Superoxide dismutase [Fe] OS=Synechocystis sp. (st... [more]
SODF_SYNE71.633e-1455.38Superoxide dismutase [Fe] OS=Synechococcus elongat... [more]
SODF_ANASP5.254e-1357.41Superoxide dismutase [Fe] OS=Anabaena sp. (strain ... [more]
SODF_RHIME6.862e-1345.59Superoxide dismutase [Mn] OS=Rhizobium meliloti GN... [more]
SODM_BACHD8.962e-1351.52Superoxide dismutase [Mn] OS=Bacillus halodurans G... [more]

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Properties
Property NameValue
Genbank descriptionC08001H05SK PhyRootSw1 Citrus sinensis cDNA clone C08001H05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX300755 ID=CX300755; Name=CX300755; organism=Citrus sinensis; type=EST; length=540bp
ATCGGAGAAGGACAAGAGCCTTTTAGTGGTGAAGACTCCCAATGCTGTCA
ATCCTCTTGTCTGGGATTACTCGTCTCTCCTTACTATTGATGTATGGGAG
CATGCTTATTACCTCGACTTTCAGAATCGACGACCTGATTACATATCAGT
TTTCATGGACAAGCTTGTATCATGGGAATCAGTAAGTAAAAGACTGGAAA
CTGCCAAAGCTCCAGCTACCTAGATTGAAATGGAAGAATGATGAAGGAAG
ATGAAGAGAAAATAAATAATAAGCTGCTTGGTAGCAACACTATGTTGTGC
TGATGATACTTTGCTGAACAATAAAAATAGTTAGGTCTTTGGTACACACT
ACTTTGTGATTAGTAATCTCTATTGTCAAAGTGTTGGTTTCTTCTTATAA
CAATCAGGGTATAATAAAACCTATCAAAGTATATGTATGAGTTACTTTTT
GAAAATAGTTTTTGGATGACTAATAATACTTTCAGGCCTGTTTAGTATGT
TGAATACTATTATCTTGGACTATAAAAAAAAAAAAAAAAA
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