CX300750
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CX300750 vs. ExPASy Swiss-Prot
Match: RL13A_HUMAN (60S ribosomal protein L13a OS=Homo sapiens GN=RPL13A PE=1 SV=2) HSP 1 Score: 208.764 bits (530), Expect = 1.716e-53 Identity = 102/166 (61.45%), Postives = 126/166 (75.90%), Query Frame = 1 Query: 1 SIVAKQLLAGKKIVVVRTEQILISGSLTRNKVKYAQFVQKRTNTNPKRGPIHFRSPARIFWRTLRGMLPHKTVRGQLAIGRLAVFEGIPEPYDKKKRVVVPAALKVLRLRADRNYTVLGDLSREVGWGYTELVAGLEAQRKVKEQAHYAQKKAAAVLRSKAEKEAD 498 +IVAKQ+L G+K+VVVR E I ISG+ RNK+KY F++KR NTNP RGP HFR+P+RIFWRT+RGMLPHKT RGQ A+ RL VF+GIP PYDKKKR+VVPAALKV+RL+ R + LG L+ EVGW Y + A LE +RK K + HY +KK LR +AEK + Sbjct: 21 AIVAKQVLLGRKVVVVRCEGINISGNFYRNKLKYLAFLRKRMNTNPSRGPYHFRAPSRIFWRTVRGMLPHKTKRGQAALDRLKVFDGIPPPYDKKKRMVVPAALKVVRLKPTRKFAYLGRLAHEVGWKYQAVTATLEEKRKEKAKIHYRKKKQLMRLRKQAEKNVE 186
BLAST of CX300750 vs. ExPASy Swiss-Prot
Match: RL13A_BOVIN (60S ribosomal protein L13a OS=Bos taurus GN=RPL13A PE=2 SV=3) HSP 1 Score: 208.764 bits (530), Expect = 1.716e-53 Identity = 106/181 (58.56%), Postives = 132/181 (72.93%), Query Frame = 1 Query: 1 SIVAKQLLAGKKIVVVRTEQILISGSLTRNKVKYAQFVQKRTNTNPKRGPIHFRSPARIFWRTLRGMLPHKTVRGQLAIGRLAVFEGIPEPYDKKKRVVVPAALKVLRLRADRNYTVLGDLSREVGWGYTELVAGLEAQRKVKEQAHYAQKKAAAVLRSKAEK--EADLSAVAPVLASLGY 537 +IVAKQ+L G+K+VVVR E I ISG+ RNK+KY F++KR NTNP RGP HFR+P+RIFWRT+RGMLPHKT RGQ A+ RL VF+GIP PYDKKKR+VVPAALKV+RL+ R + LG L+ EVGW Y + A LE +RK K + HY +KK LR +AEK E + VL + G+ Sbjct: 21 AIVAKQVLLGRKVVVVRCEGINISGNFYRNKLKYLAFLRKRMNTNPSRGPYHFRAPSRIFWRTVRGMLPHKTKRGQAALERLKVFDGIPPPYDKKKRMVVPAALKVVRLKPTRKFAYLGRLAHEVGWKYQAVTATLEEKRKEKAKIHYRKKKQLMRLRKQAEKNIEKKIGKFTEVLKTHGF 201
BLAST of CX300750 vs. ExPASy Swiss-Prot
Match: RL13A_PONAB (60S ribosomal protein L13a OS=Pongo abelii GN=RPL13A PE=2 SV=3) HSP 1 Score: 207.223 bits (526), Expect = 4.993e-53 Identity = 101/166 (60.84%), Postives = 126/166 (75.90%), Query Frame = 1 Query: 1 SIVAKQLLAGKKIVVVRTEQILISGSLTRNKVKYAQFVQKRTNTNPKRGPIHFRSPARIFWRTLRGMLPHKTVRGQLAIGRLAVFEGIPEPYDKKKRVVVPAALKVLRLRADRNYTVLGDLSREVGWGYTELVAGLEAQRKVKEQAHYAQKKAAAVLRSKAEKEAD 498 +IVAKQ+L G+K+VVVR E I ISG+ RNK+KY F++KR NT+P RGP HFR+P+RIFWRT+RGMLPHKT RGQ A+ RL VF+GIP PYDKKKR+VVPAALKV+RL+ R + LG L+ EVGW Y + A LE +RK K + HY +KK LR +AEK + Sbjct: 21 AIVAKQVLLGRKVVVVRCEGINISGNFYRNKLKYLAFLRKRMNTSPSRGPYHFRAPSRIFWRTVRGMLPHKTKRGQAALDRLKVFDGIPPPYDKKKRMVVPAALKVVRLKPTRKFAYLGRLAHEVGWKYQAVTATLEEKRKEKAKIHYRKKKQLVRLRKQAEKNVE 186
BLAST of CX300750 vs. ExPASy Swiss-Prot
Match: RL13A_MACFA (60S ribosomal protein L13a OS=Macaca fascicularis GN=RPL13A PE=2 SV=3) HSP 1 Score: 207.223 bits (526), Expect = 4.993e-53 Identity = 101/166 (60.84%), Postives = 125/166 (75.30%), Query Frame = 1 Query: 1 SIVAKQLLAGKKIVVVRTEQILISGSLTRNKVKYAQFVQKRTNTNPKRGPIHFRSPARIFWRTLRGMLPHKTVRGQLAIGRLAVFEGIPEPYDKKKRVVVPAALKVLRLRADRNYTVLGDLSREVGWGYTELVAGLEAQRKVKEQAHYAQKKAAAVLRSKAEKEAD 498 +IVAKQ+L G+K+VVVR E I ISG+ RNK+KY F++KR NTNP RGP HFR+P+RIFWRT+RGMLPHKT RGQ A+ RL VF+GIP PYDKKKR+VVPAALKV+RL+ R + LG L+ EVGW Y + LE +RK K + HY +KK LR +AEK + Sbjct: 21 AIVAKQVLLGRKVVVVRCEGINISGNFYRNKLKYLAFLRKRMNTNPSRGPYHFRAPSRIFWRTVRGMLPHKTKRGQAALDRLKVFDGIPPPYDKKKRMVVPAALKVVRLKPTRKFAYLGRLAHEVGWKYQAVTTTLEEKRKEKAKIHYRKKKQLMRLRKQAEKNVE 186
BLAST of CX300750 vs. ExPASy Swiss-Prot
Match: RL13A_RAT (60S ribosomal protein L13a OS=Rattus norvegicus GN=Rpl13a PE=1 SV=2) HSP 1 Score: 206.068 bits (523), Expect = 1.112e-52 Identity = 101/166 (60.84%), Postives = 125/166 (75.30%), Query Frame = 1 Query: 1 SIVAKQLLAGKKIVVVRTEQILISGSLTRNKVKYAQFVQKRTNTNPKRGPIHFRSPARIFWRTLRGMLPHKTVRGQLAIGRLAVFEGIPEPYDKKKRVVVPAALKVLRLRADRNYTVLGDLSREVGWGYTELVAGLEAQRKVKEQAHYAQKKAAAVLRSKAEKEAD 498 +IVAKQ+L G+K+VVVR E I ISG+ RNK+KY F++KR NTNP RGP HFR+P+RIFWRT+RGMLPHKT RGQ A+ RL V +GIP PYDKKKR+VVPAALKV+RL+ R + LG L+ EVGW Y + A LE +RK K + HY +KK LR +AEK + Sbjct: 21 AIVAKQVLLGRKVVVVRCEGINISGNFYRNKLKYLAFLRKRMNTNPSRGPYHFRAPSRIFWRTVRGMLPHKTKRGQAALERLKVLDGIPPPYDKKKRMVVPAALKVVRLKPTRKFAYLGRLAHEVGWKYQAVTATLEEKRKEKAKIHYRKKKQLLRLRKQAEKNVE 186
BLAST of CX300750 vs. ExPASy Swiss-Prot
Match: RL13A_MOUSE (60S ribosomal protein L13a OS=Mus musculus GN=Rpl13a PE=1 SV=4) HSP 1 Score: 206.068 bits (523), Expect = 1.112e-52 Identity = 101/166 (60.84%), Postives = 125/166 (75.30%), Query Frame = 1 Query: 1 SIVAKQLLAGKKIVVVRTEQILISGSLTRNKVKYAQFVQKRTNTNPKRGPIHFRSPARIFWRTLRGMLPHKTVRGQLAIGRLAVFEGIPEPYDKKKRVVVPAALKVLRLRADRNYTVLGDLSREVGWGYTELVAGLEAQRKVKEQAHYAQKKAAAVLRSKAEKEAD 498 +IVAKQ+L G+K+VVVR E I ISG+ RNK+KY F++KR NTNP RGP HFR+P+RIFWRT+RGMLPHKT RGQ A+ RL V +GIP PYDKKKR+VVPAALKV+RL+ R + LG L+ EVGW Y + A LE +RK K + HY +KK LR +AEK + Sbjct: 21 AIVAKQVLLGRKVVVVRCEGINISGNFYRNKLKYLAFLRKRMNTNPSRGPYHFRAPSRIFWRTVRGMLPHKTKRGQAALERLKVLDGIPPPYDKKKRMVVPAALKVVRLKPTRKFAYLGRLAHEVGWKYQAVTATLEEKRKEKAKMHYRKKKQILRLRKQAEKNVE 186
BLAST of CX300750 vs. ExPASy Swiss-Prot
Match: R13A2_ARATH (60S ribosomal protein L13a-2 OS=Arabidopsis thaliana GN=RPL13AB PE=1 SV=1) HSP 1 Score: 206.068 bits (523), Expect = 1.112e-52 Identity = 102/181 (56.35%), Postives = 133/181 (73.48%), Query Frame = 1 Query: 1 SIVAKQLLAGKKIVVVRTEQILISGSLTRNKVKYAQFVQKRTNTNPKRGPIHFRSPARIFWRTLRGMLPHKTVRGQLAIGRLAVFEGIPEPYDKKKRVVVPAALKVLRLRADRNYTVLGDLSREVGWGYTELVAGLEAQRKVKEQAHYAQKKAAAVLRSKAEKEAD--LSAVAPVLASLGY 537 SI+AK+LL G+ +VVVR E+I +SG L R K+KY +F++KR NT P GPIHFR+P++IFWRT+RGM+PHKT RG A+ RL VFEG+P PYDK KR+V+P ALKVLRL+A Y +LG LS EVGW + + + LE +RK + QA Y +KK LR+KAEK A+ L + VLAS+ Y Sbjct: 26 SIIAKELLNGQSVVVVRCEEICLSGGLVRQKMKYMRFLRKRMNTKPSHGPIHFRAPSKIFWRTVRGMIPHKTKRGAAALARLKVFEGVPPPYDKVKRMVIPDALKVLRLQAGHKYCLLGRLSSEVGWNHYDTIKELEVKRKERSQALYERKKQLTKLRAKAEKVAEEKLGSQLDVLASIKY 206
BLAST of CX300750 vs. ExPASy Swiss-Prot
Match: RL13A_SALTR (60S ribosomal protein L13a (Fragment) OS=Salmo trutta GN=rpl13a PE=2 SV=1) HSP 1 Score: 202.216 bits (513), Expect = 1.606e-51 Identity = 101/180 (56.11%), Postives = 129/180 (71.67%), Query Frame = 1 Query: 1 SIVAKQLLAGKKIVVVRTEQILISGSLTRNKVKYAQFVQKRTNTNPKRGPIHFRSPARIFWRTLRGMLPHKTVRGQLAIGRLAVFEGIPEPYDKKKRVVVPAALKVLRLRADRNYTVLGDLSREVGWGYTELVAGLEAQRKVKEQAHYAQKKAAAVLRSKAEK--EADLSAVAPVLASLG 534 +IVA ++L G K+VVVR E I ISG+ RNK+KY F++KR NTNP RGP HFR+P+RIFWRT+RGMLPHKT RGQ A+ RL VF+G+P PYDK+KR+VVPAALK++RL+ R + +LG L+ EVGW Y + A LE +RK K + YA+KK L AEK E+ +S VL G Sbjct: 7 AIVANEVLLGHKVVVVRCEGINISGNFYRNKLKYLAFLRKRMNTNPSRGPYHFRAPSRIFWRTVRGMLPHKTKRGQAALERLKVFDGVPPPYDKRKRMVVPAALKIVRLKPTRKFALLGRLAHEVGWKYQAITATLEEKRKEKAKIRYAKKKTVTKLSKLAEKNVESTISKYTAVLKQYG 186
BLAST of CX300750 vs. ExPASy Swiss-Prot
Match: RL16A_YEAST (60S ribosomal protein L16-A OS=Saccharomyces cerevisiae GN=RPL16A PE=1 SV=3) HSP 1 Score: 201.83 bits (512), Expect = 2.098e-51 Identity = 105/179 (58.66%), Postives = 129/179 (72.07%), Query Frame = 1 Query: 1 SIVAKQLLAGKKIVVVRTEQILISGSLTRNKVKYAQFVQKRTNTNPKRGPIHFRSPARIFWRTLRGMLPHKTVRGQLAIGRLAVFEGIPEPYDKKKRVVVPAALKVLRLRADRNYTVLGDLSREVGWGYTELVAGLEAQRKVKEQAHYAQKKAAAVLRSKAEKEADLSAVAPVLASLGY 537 S+VAKQLL G+KIVVVR E++ ISG RNK+KY F++K T N RGP HFR+P+RIF++ LRGM+ HKT RG+ A+ RL VFEGIP PYDKKKRVVVP AL+VLRL+ R YT LG LS VGW Y ++VA LEA+RKV +YA+K+A + A A S VA LA+LGY Sbjct: 21 SVVAKQLLNGQKIVVVRAEELNISGEFFRNKLKYHDFLRKATAFNKTRGPFHFRAPSRIFYKALRGMVSHKTARGKAALERLKVFEGIPPPYDKKKRVVVPQALRVLRLKPGRKYTTLGKLSTSVGWKYEDVVAKLEAKRKVSSAEYYAKKRAFTKKVASANATAAESDVAKQLAALGY 199
BLAST of CX300750 vs. ExPASy Swiss-Prot
Match: R13A1_ARATH (60S ribosomal protein L13a-1 OS=Arabidopsis thaliana GN=RPL13AA PE=2 SV=1) HSP 1 Score: 201.83 bits (512), Expect = 2.098e-51 Identity = 103/181 (56.91%), Postives = 132/181 (72.93%), Query Frame = 1 Query: 1 SIVAKQLLAGKKIVVVRTEQILISGSLTRNKVKYAQFVQKRTNTNPKRGPIHFRSPARIFWRTLRGMLPHKTVRGQLAIGRLAVFEGIPEPYDKKKRVVVPAALKVLRLRADRNYTVLGDLSREVGWGYTELVAGLEAQRKVKEQAHYAQKKAAAVLRSKAEKEAD--LSAVAPVLASLGY 537 S+VAK LL G+ IVVVR E+I +SG L R K+KY +F++KR NT P GPIHFR+P++IFWRT+RGM+PHKT RG A+ RL VFEG+P PYDK KR+VVP ALKVLRL+A Y +LG LS EVGW + + + LE +RK + QA Y +KK + LR+KAEK A+ L + VLA + Y Sbjct: 26 SVVAKDLLNGQNIVVVRCEEICLSGGLVRQKMKYMRFLRKRMNTKPSHGPIHFRAPSKIFWRTVRGMIPHKTKRGANALARLKVFEGVPTPYDKIKRMVVPDALKVLRLQAGHKYCLLGRLSSEVGWNHYDTIKELENKRKERAQAVYERKKQLSKLRAKAEKVAEEKLGSQLDVLAPVKY 206 The following BLAST results are available for this feature:
BLAST of CX300750 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 40
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Sequences
The
following sequences are available for this feature:
EST sequence >CX300750 ID=CX300750; Name=CX300750; organism=Citrus sinensis; type=EST; length=594bpback to top |