CX300750

Overview
NameCX300750
Unique NameCX300750
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length594
Libraries
Library NameType
PhyRootSw1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX300750 vs. ExPASy Swiss-Prot
Match: RL13A_HUMAN (60S ribosomal protein L13a OS=Homo sapiens GN=RPL13A PE=1 SV=2)

HSP 1 Score: 208.764 bits (530), Expect = 1.716e-53
Identity = 102/166 (61.45%), Postives = 126/166 (75.90%), Query Frame = 1
Query:    1 SIVAKQLLAGKKIVVVRTEQILISGSLTRNKVKYAQFVQKRTNTNPKRGPIHFRSPARIFWRTLRGMLPHKTVRGQLAIGRLAVFEGIPEPYDKKKRVVVPAALKVLRLRADRNYTVLGDLSREVGWGYTELVAGLEAQRKVKEQAHYAQKKAAAVLRSKAEKEAD 498
            +IVAKQ+L G+K+VVVR E I ISG+  RNK+KY  F++KR NTNP RGP HFR+P+RIFWRT+RGMLPHKT RGQ A+ RL VF+GIP PYDKKKR+VVPAALKV+RL+  R +  LG L+ EVGW Y  + A LE +RK K + HY +KK    LR +AEK  +
Sbjct:   21 AIVAKQVLLGRKVVVVRCEGINISGNFYRNKLKYLAFLRKRMNTNPSRGPYHFRAPSRIFWRTVRGMLPHKTKRGQAALDRLKVFDGIPPPYDKKKRMVVPAALKVVRLKPTRKFAYLGRLAHEVGWKYQAVTATLEEKRKEKAKIHYRKKKQLMRLRKQAEKNVE 186          
BLAST of CX300750 vs. ExPASy Swiss-Prot
Match: RL13A_BOVIN (60S ribosomal protein L13a OS=Bos taurus GN=RPL13A PE=2 SV=3)

HSP 1 Score: 208.764 bits (530), Expect = 1.716e-53
Identity = 106/181 (58.56%), Postives = 132/181 (72.93%), Query Frame = 1
Query:    1 SIVAKQLLAGKKIVVVRTEQILISGSLTRNKVKYAQFVQKRTNTNPKRGPIHFRSPARIFWRTLRGMLPHKTVRGQLAIGRLAVFEGIPEPYDKKKRVVVPAALKVLRLRADRNYTVLGDLSREVGWGYTELVAGLEAQRKVKEQAHYAQKKAAAVLRSKAEK--EADLSAVAPVLASLGY 537
            +IVAKQ+L G+K+VVVR E I ISG+  RNK+KY  F++KR NTNP RGP HFR+P+RIFWRT+RGMLPHKT RGQ A+ RL VF+GIP PYDKKKR+VVPAALKV+RL+  R +  LG L+ EVGW Y  + A LE +RK K + HY +KK    LR +AEK  E  +     VL + G+
Sbjct:   21 AIVAKQVLLGRKVVVVRCEGINISGNFYRNKLKYLAFLRKRMNTNPSRGPYHFRAPSRIFWRTVRGMLPHKTKRGQAALERLKVFDGIPPPYDKKKRMVVPAALKVVRLKPTRKFAYLGRLAHEVGWKYQAVTATLEEKRKEKAKIHYRKKKQLMRLRKQAEKNIEKKIGKFTEVLKTHGF 201          
BLAST of CX300750 vs. ExPASy Swiss-Prot
Match: RL13A_PONAB (60S ribosomal protein L13a OS=Pongo abelii GN=RPL13A PE=2 SV=3)

HSP 1 Score: 207.223 bits (526), Expect = 4.993e-53
Identity = 101/166 (60.84%), Postives = 126/166 (75.90%), Query Frame = 1
Query:    1 SIVAKQLLAGKKIVVVRTEQILISGSLTRNKVKYAQFVQKRTNTNPKRGPIHFRSPARIFWRTLRGMLPHKTVRGQLAIGRLAVFEGIPEPYDKKKRVVVPAALKVLRLRADRNYTVLGDLSREVGWGYTELVAGLEAQRKVKEQAHYAQKKAAAVLRSKAEKEAD 498
            +IVAKQ+L G+K+VVVR E I ISG+  RNK+KY  F++KR NT+P RGP HFR+P+RIFWRT+RGMLPHKT RGQ A+ RL VF+GIP PYDKKKR+VVPAALKV+RL+  R +  LG L+ EVGW Y  + A LE +RK K + HY +KK    LR +AEK  +
Sbjct:   21 AIVAKQVLLGRKVVVVRCEGINISGNFYRNKLKYLAFLRKRMNTSPSRGPYHFRAPSRIFWRTVRGMLPHKTKRGQAALDRLKVFDGIPPPYDKKKRMVVPAALKVVRLKPTRKFAYLGRLAHEVGWKYQAVTATLEEKRKEKAKIHYRKKKQLVRLRKQAEKNVE 186          
BLAST of CX300750 vs. ExPASy Swiss-Prot
Match: RL13A_MACFA (60S ribosomal protein L13a OS=Macaca fascicularis GN=RPL13A PE=2 SV=3)

HSP 1 Score: 207.223 bits (526), Expect = 4.993e-53
Identity = 101/166 (60.84%), Postives = 125/166 (75.30%), Query Frame = 1
Query:    1 SIVAKQLLAGKKIVVVRTEQILISGSLTRNKVKYAQFVQKRTNTNPKRGPIHFRSPARIFWRTLRGMLPHKTVRGQLAIGRLAVFEGIPEPYDKKKRVVVPAALKVLRLRADRNYTVLGDLSREVGWGYTELVAGLEAQRKVKEQAHYAQKKAAAVLRSKAEKEAD 498
            +IVAKQ+L G+K+VVVR E I ISG+  RNK+KY  F++KR NTNP RGP HFR+P+RIFWRT+RGMLPHKT RGQ A+ RL VF+GIP PYDKKKR+VVPAALKV+RL+  R +  LG L+ EVGW Y  +   LE +RK K + HY +KK    LR +AEK  +
Sbjct:   21 AIVAKQVLLGRKVVVVRCEGINISGNFYRNKLKYLAFLRKRMNTNPSRGPYHFRAPSRIFWRTVRGMLPHKTKRGQAALDRLKVFDGIPPPYDKKKRMVVPAALKVVRLKPTRKFAYLGRLAHEVGWKYQAVTTTLEEKRKEKAKIHYRKKKQLMRLRKQAEKNVE 186          
BLAST of CX300750 vs. ExPASy Swiss-Prot
Match: RL13A_RAT (60S ribosomal protein L13a OS=Rattus norvegicus GN=Rpl13a PE=1 SV=2)

HSP 1 Score: 206.068 bits (523), Expect = 1.112e-52
Identity = 101/166 (60.84%), Postives = 125/166 (75.30%), Query Frame = 1
Query:    1 SIVAKQLLAGKKIVVVRTEQILISGSLTRNKVKYAQFVQKRTNTNPKRGPIHFRSPARIFWRTLRGMLPHKTVRGQLAIGRLAVFEGIPEPYDKKKRVVVPAALKVLRLRADRNYTVLGDLSREVGWGYTELVAGLEAQRKVKEQAHYAQKKAAAVLRSKAEKEAD 498
            +IVAKQ+L G+K+VVVR E I ISG+  RNK+KY  F++KR NTNP RGP HFR+P+RIFWRT+RGMLPHKT RGQ A+ RL V +GIP PYDKKKR+VVPAALKV+RL+  R +  LG L+ EVGW Y  + A LE +RK K + HY +KK    LR +AEK  +
Sbjct:   21 AIVAKQVLLGRKVVVVRCEGINISGNFYRNKLKYLAFLRKRMNTNPSRGPYHFRAPSRIFWRTVRGMLPHKTKRGQAALERLKVLDGIPPPYDKKKRMVVPAALKVVRLKPTRKFAYLGRLAHEVGWKYQAVTATLEEKRKEKAKIHYRKKKQLLRLRKQAEKNVE 186          
BLAST of CX300750 vs. ExPASy Swiss-Prot
Match: RL13A_MOUSE (60S ribosomal protein L13a OS=Mus musculus GN=Rpl13a PE=1 SV=4)

HSP 1 Score: 206.068 bits (523), Expect = 1.112e-52
Identity = 101/166 (60.84%), Postives = 125/166 (75.30%), Query Frame = 1
Query:    1 SIVAKQLLAGKKIVVVRTEQILISGSLTRNKVKYAQFVQKRTNTNPKRGPIHFRSPARIFWRTLRGMLPHKTVRGQLAIGRLAVFEGIPEPYDKKKRVVVPAALKVLRLRADRNYTVLGDLSREVGWGYTELVAGLEAQRKVKEQAHYAQKKAAAVLRSKAEKEAD 498
            +IVAKQ+L G+K+VVVR E I ISG+  RNK+KY  F++KR NTNP RGP HFR+P+RIFWRT+RGMLPHKT RGQ A+ RL V +GIP PYDKKKR+VVPAALKV+RL+  R +  LG L+ EVGW Y  + A LE +RK K + HY +KK    LR +AEK  +
Sbjct:   21 AIVAKQVLLGRKVVVVRCEGINISGNFYRNKLKYLAFLRKRMNTNPSRGPYHFRAPSRIFWRTVRGMLPHKTKRGQAALERLKVLDGIPPPYDKKKRMVVPAALKVVRLKPTRKFAYLGRLAHEVGWKYQAVTATLEEKRKEKAKMHYRKKKQILRLRKQAEKNVE 186          
BLAST of CX300750 vs. ExPASy Swiss-Prot
Match: R13A2_ARATH (60S ribosomal protein L13a-2 OS=Arabidopsis thaliana GN=RPL13AB PE=1 SV=1)

HSP 1 Score: 206.068 bits (523), Expect = 1.112e-52
Identity = 102/181 (56.35%), Postives = 133/181 (73.48%), Query Frame = 1
Query:    1 SIVAKQLLAGKKIVVVRTEQILISGSLTRNKVKYAQFVQKRTNTNPKRGPIHFRSPARIFWRTLRGMLPHKTVRGQLAIGRLAVFEGIPEPYDKKKRVVVPAALKVLRLRADRNYTVLGDLSREVGWGYTELVAGLEAQRKVKEQAHYAQKKAAAVLRSKAEKEAD--LSAVAPVLASLGY 537
            SI+AK+LL G+ +VVVR E+I +SG L R K+KY +F++KR NT P  GPIHFR+P++IFWRT+RGM+PHKT RG  A+ RL VFEG+P PYDK KR+V+P ALKVLRL+A   Y +LG LS EVGW + + +  LE +RK + QA Y +KK    LR+KAEK A+  L +   VLAS+ Y
Sbjct:   26 SIIAKELLNGQSVVVVRCEEICLSGGLVRQKMKYMRFLRKRMNTKPSHGPIHFRAPSKIFWRTVRGMIPHKTKRGAAALARLKVFEGVPPPYDKVKRMVIPDALKVLRLQAGHKYCLLGRLSSEVGWNHYDTIKELEVKRKERSQALYERKKQLTKLRAKAEKVAEEKLGSQLDVLASIKY 206          
BLAST of CX300750 vs. ExPASy Swiss-Prot
Match: RL13A_SALTR (60S ribosomal protein L13a (Fragment) OS=Salmo trutta GN=rpl13a PE=2 SV=1)

HSP 1 Score: 202.216 bits (513), Expect = 1.606e-51
Identity = 101/180 (56.11%), Postives = 129/180 (71.67%), Query Frame = 1
Query:    1 SIVAKQLLAGKKIVVVRTEQILISGSLTRNKVKYAQFVQKRTNTNPKRGPIHFRSPARIFWRTLRGMLPHKTVRGQLAIGRLAVFEGIPEPYDKKKRVVVPAALKVLRLRADRNYTVLGDLSREVGWGYTELVAGLEAQRKVKEQAHYAQKKAAAVLRSKAEK--EADLSAVAPVLASLG 534
            +IVA ++L G K+VVVR E I ISG+  RNK+KY  F++KR NTNP RGP HFR+P+RIFWRT+RGMLPHKT RGQ A+ RL VF+G+P PYDK+KR+VVPAALK++RL+  R + +LG L+ EVGW Y  + A LE +RK K +  YA+KK    L   AEK  E+ +S    VL   G
Sbjct:    7 AIVANEVLLGHKVVVVRCEGINISGNFYRNKLKYLAFLRKRMNTNPSRGPYHFRAPSRIFWRTVRGMLPHKTKRGQAALERLKVFDGVPPPYDKRKRMVVPAALKIVRLKPTRKFALLGRLAHEVGWKYQAITATLEEKRKEKAKIRYAKKKTVTKLSKLAEKNVESTISKYTAVLKQYG 186          
BLAST of CX300750 vs. ExPASy Swiss-Prot
Match: RL16A_YEAST (60S ribosomal protein L16-A OS=Saccharomyces cerevisiae GN=RPL16A PE=1 SV=3)

HSP 1 Score: 201.83 bits (512), Expect = 2.098e-51
Identity = 105/179 (58.66%), Postives = 129/179 (72.07%), Query Frame = 1
Query:    1 SIVAKQLLAGKKIVVVRTEQILISGSLTRNKVKYAQFVQKRTNTNPKRGPIHFRSPARIFWRTLRGMLPHKTVRGQLAIGRLAVFEGIPEPYDKKKRVVVPAALKVLRLRADRNYTVLGDLSREVGWGYTELVAGLEAQRKVKEQAHYAQKKAAAVLRSKAEKEADLSAVAPVLASLGY 537
            S+VAKQLL G+KIVVVR E++ ISG   RNK+KY  F++K T  N  RGP HFR+P+RIF++ LRGM+ HKT RG+ A+ RL VFEGIP PYDKKKRVVVP AL+VLRL+  R YT LG LS  VGW Y ++VA LEA+RKV    +YA+K+A     + A   A  S VA  LA+LGY
Sbjct:   21 SVVAKQLLNGQKIVVVRAEELNISGEFFRNKLKYHDFLRKATAFNKTRGPFHFRAPSRIFYKALRGMVSHKTARGKAALERLKVFEGIPPPYDKKKRVVVPQALRVLRLKPGRKYTTLGKLSTSVGWKYEDVVAKLEAKRKVSSAEYYAKKRAFTKKVASANATAAESDVAKQLAALGY 199          
BLAST of CX300750 vs. ExPASy Swiss-Prot
Match: R13A1_ARATH (60S ribosomal protein L13a-1 OS=Arabidopsis thaliana GN=RPL13AA PE=2 SV=1)

HSP 1 Score: 201.83 bits (512), Expect = 2.098e-51
Identity = 103/181 (56.91%), Postives = 132/181 (72.93%), Query Frame = 1
Query:    1 SIVAKQLLAGKKIVVVRTEQILISGSLTRNKVKYAQFVQKRTNTNPKRGPIHFRSPARIFWRTLRGMLPHKTVRGQLAIGRLAVFEGIPEPYDKKKRVVVPAALKVLRLRADRNYTVLGDLSREVGWGYTELVAGLEAQRKVKEQAHYAQKKAAAVLRSKAEKEAD--LSAVAPVLASLGY 537
            S+VAK LL G+ IVVVR E+I +SG L R K+KY +F++KR NT P  GPIHFR+P++IFWRT+RGM+PHKT RG  A+ RL VFEG+P PYDK KR+VVP ALKVLRL+A   Y +LG LS EVGW + + +  LE +RK + QA Y +KK  + LR+KAEK A+  L +   VLA + Y
Sbjct:   26 SVVAKDLLNGQNIVVVRCEEICLSGGLVRQKMKYMRFLRKRMNTKPSHGPIHFRAPSKIFWRTVRGMIPHKTKRGANALARLKVFEGVPTPYDKIKRMVVPDALKVLRLQAGHKYCLLGRLSSEVGWNHYDTIKELENKRKERAQAVYERKKQLSKLRAKAEKVAEEKLGSQLDVLAPVKY 206          
The following BLAST results are available for this feature:
BLAST of CX300750 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 40
Match NameE-valueIdentityDescription
RL13A_HUMAN1.716e-5361.4560S ribosomal protein L13a OS=Homo sapiens GN=RPL1... [more]
RL13A_BOVIN1.716e-5358.5660S ribosomal protein L13a OS=Bos taurus GN=RPL13A... [more]
RL13A_PONAB4.993e-5360.8460S ribosomal protein L13a OS=Pongo abelii GN=RPL1... [more]
RL13A_MACFA4.993e-5360.8460S ribosomal protein L13a OS=Macaca fascicularis ... [more]
RL13A_RAT1.112e-5260.8460S ribosomal protein L13a OS=Rattus norvegicus GN... [more]
RL13A_MOUSE1.112e-5260.8460S ribosomal protein L13a OS=Mus musculus GN=Rpl1... [more]
R13A2_ARATH1.112e-5256.3560S ribosomal protein L13a-2 OS=Arabidopsis thalia... [more]
RL13A_SALTR1.606e-5156.1160S ribosomal protein L13a (Fragment) OS=Salmo tru... [more]
RL16A_YEAST2.098e-5158.6660S ribosomal protein L16-A OS=Saccharomyces cerev... [more]
R13A1_ARATH2.098e-5156.9160S ribosomal protein L13a-1 OS=Arabidopsis thalia... [more]

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Properties
Property NameValue
Genbank descriptionC08001G12SK PhyRootSw1 Citrus sinensis cDNA clone C08001G12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX300750 ID=CX300750; Name=CX300750; organism=Citrus sinensis; type=EST; length=594bp
TCTATCGTGGCTAAGCAATTATTAGCAGGCAAGAAAATCGTCGTTGTCCG
CACTGAGCAAATCCTCATCTCTGGATCATTGACCAGAAATAAGGTCAAGT
ATGCTCAATTCGTCCAGAAGAGAACCAACACTAACCCAAAGAGAGGTCCT
ATCCACTTCAGATCTCCTGCAAGAATATTCTGGAGAACATTACGCGGTAT
GCTTCCACACAAGACCGTCCGCGGTCAATTGGCTATCGGCAGATTAGCCG
TCTTCGAAGGTATTCCTGAGCCATATGATAAGAAGAAGCGTGTTGTTGTT
CCTGCTGCCCTTAAGGTTCTTCGCTTAAGAGCTGATCGCAACTACACTGT
CCTTGGAGATTTATCCAGAGAGGTTGGATGGGGATACACTGAATTGGTTG
CTGGTCTTGAGGCTCAACGAAAAGTCAAGGAACAAGCTCACTACGCCCAG
AAGAAGGCTGCTGCTGTCCTCAGAAGCAAGGCCGAGAAGGAGGCTGACTT
ATCTGCTGTTGCTCCAGTCCTCGCTAGCCTTGGTTATTAAATTATCTTAC
AGATAAAGGCGATGAATAAATACAAGCTTTCCTGCATAAAATAG
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