CX300743

Overview
NameCX300743
Unique NameCX300743
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length596
Libraries
Library NameType
PhyRootSw1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX300743 vs. ExPASy Swiss-Prot
Match: ACT1_SCHMA (Actin-1 OS=Schistosoma mansoni PE=2 SV=1)

HSP 1 Score: 155.606 bits (392), Expect = 1.724e-37
Identity = 84/204 (41.18%), Postives = 127/204 (62.25%), Query Frame = 3
Query:    3 MFETYNVPAMFIEVPNILNQYASGTKTGLTVCCGDGVMVTQAISNGYALPNTISRSDFGGRDLNQYFISTMYQRGERSFLTSAEFQIAGDVIQKLGLIAPD------ASLTHSCGKLSYELPDGEILSIQNERYQIPEALFRPSLMGSSYDSISGVADLVQQTLSRVPEEDGARADVAKNIIVSGAPTLYPGFAERLEQEVKAL 596
            MFET+NVPAM++ +  +L+ YASG  TG+ +  GDGV  T  I  GYALP+ I R D  GRDL  Y +  + +RG  SF T+AE +I  D+ +KL  +A D       + + S  + SYELPDG++++I NER++ PEALF+PS +G      SG+ +    ++ +   +   R D+  N ++SG  T+YPG A+R+++E+ AL
Sbjct:  124 MFETFNVPAMYVAIQAVLSLYASGRTTGIVLDSGDGVTHTVPIYEGYALPHAILRLDLAGRDLTDYMMKILTERG-YSFTTTAEREIVRDIKEKLCYVALDFEQEMGTAASSSALEKSYELPDGQVITIGNERFRCPEALFQPSFLGM---EASGIHETTYNSIMKCDVD--IRKDLYSNTVLSGGSTMYPGIADRMQKEISAL 321          
BLAST of CX300743 vs. ExPASy Swiss-Prot
Match: ACT_ACHBI (Actin OS=Achlya bisexualis PE=3 SV=1)

HSP 1 Score: 154.836 bits (390), Expect = 2.941e-37
Identity = 90/204 (44.12%), Postives = 125/204 (61.27%), Query Frame = 3
Query:    3 MFETYNVPAMFIEVPNILNQYASGTKTGLTVCCGDGVMVTQAISNGYALPNTISRSDFGGRDLNQYFISTMYQRGERSFLTSAEFQIAGDVIQKLGLIAPD-----ASLTHSCG-KLSYELPDGEILSIQNERYQIPEALFRPSLMGSSYDSISGVADLVQQTLSRVPEEDGARADVAKNIIVSGAPTLYPGFAERLEQEVKAL 596
            MFET+NVPAM++ +  +L+ YASG  TG  +  GDGV  T  I  GYALP+ I R D  GRDL  Y +  + +RG  SF T+AE +I  D+ +KL  IA D      +   S G + SYELPDG +L I NER++ PE LF+P+L+G      SG+ D   QT+ +   +   R D+  NI++SG  T+YPG +ER+ +E+ AL
Sbjct:  124 MFETFNVPAMYVNIQAVLSLYASGRTTGCVLDSGDGVSHTVPIYEGYALPHAIVRLDLAGRDLTDYMMKILTERG-YSFTTTAEREIVRDIKEKLTYIALDFDQEMKTAAESSGLEKSYELPDGNVLVIGNERFRTPEVLFQPALIGK---EASGIHDCTFQTIMKCDVD--IRKDLYCNIVLSGGTTMYPGISERMTKELTAL 321          
BLAST of CX300743 vs. ExPASy Swiss-Prot
Match: ACT3_BACDO (Actin-3, muscle-specific OS=Bactrocera dorsalis PE=2 SV=1)

HSP 1 Score: 154.066 bits (388), Expect = 5.016e-37
Identity = 86/205 (41.95%), Postives = 129/205 (62.93%), Query Frame = 3
Query:    3 MFETYNVPAMFIEVPNILNQYASGTKTGLTVCCGDGVMVTQAISNGYALPNTISRSDFGGRDLNQYFISTMYQRGERSFLTSAEFQIAGDVIQKLGLIAPD-------ASLTHSCGKLSYELPDGEILSIQNERYQIPEALFRPSLMGSSYDSISGVADLVQQTLSRVPEEDGARADVAKNIIVSGAPTLYPGFAERLEQEVKAL 596
            MFET+N PAM++ +  +L+ YASG  TG+ +  GDGV  T  I  GYALP+ I R D  GRDL  Y +  + +RG  SF T+AE +I  D+ +KL  +A D       A+ + S  K SYELPDG++++I NER++ PE+LF+PS +G      SG+ + V  ++ +   +   R D+  NI++SG  T+YPG A+R+++E+ AL
Sbjct:  124 MFETFNTPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDYLMKILTERG-YSFTTTAEREIVRDIKEKLCYVALDFEQEMATAAASTSLEK-SYELPDGQVITIGNERFRCPESLFQPSFLGM---ESSGIHETVYNSIMKCDVD--IRKDLYANIVMSGGTTMYPGIADRMQKEITAL 321          
BLAST of CX300743 vs. ExPASy Swiss-Prot
Match: ACT2_BACDO (Actin-2, muscle-specific OS=Bactrocera dorsalis PE=2 SV=1)

HSP 1 Score: 153.295 bits (386), Expect = 8.557e-37
Identity = 86/205 (41.95%), Postives = 129/205 (62.93%), Query Frame = 3
Query:    3 MFETYNVPAMFIEVPNILNQYASGTKTGLTVCCGDGVMVTQAISNGYALPNTISRSDFGGRDLNQYFISTMYQRGERSFLTSAEFQIAGDVIQKLGLIAPD-------ASLTHSCGKLSYELPDGEILSIQNERYQIPEALFRPSLMGSSYDSISGVADLVQQTLSRVPEEDGARADVAKNIIVSGAPTLYPGFAERLEQEVKAL 596
            MFET+N PAM++ +  +L+ YASG  TG+ +  GDGV  T  I  GYALP+ I R D  GRDL  Y +  + +RG  SF T+AE +I  D+ +KL  +A D       A+ + S  K SYELPDG++++I NER++ PE+LF+PS +G      SG+ + V  ++ +   +   R D+  NI++SG  T+YPG A+R+++E+ AL
Sbjct:  124 MFETFNSPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDYLMKILTERG-YSFTTTAEREIVRDIKEKLCYVALDFEQEMATAAASTSLEK-SYELPDGQVITIGNERFRCPESLFQPSFLGM---ESSGIHETVYNSIMKCDVD--IRKDLYANIVMSGGTTMYPGIADRMQKEITAL 321          
BLAST of CX300743 vs. ExPASy Swiss-Prot
Match: ACT1_PHYIN (Actin-1 OS=Phytophthora infestans GN=ACTA PE=2 SV=1)

HSP 1 Score: 153.295 bits (386), Expect = 8.557e-37
Identity = 89/204 (43.63%), Postives = 124/204 (60.78%), Query Frame = 3
Query:    3 MFETYNVPAMFIEVPNILNQYASGTKTGLTVCCGDGVMVTQAISNGYALPNTISRSDFGGRDLNQYFISTMYQRGERSFLTSAEFQIAGDVIQKLGLIAPD-----ASLTHSCG-KLSYELPDGEILSIQNERYQIPEALFRPSLMGSSYDSISGVADLVQQTLSRVPEEDGARADVAKNIIVSGAPTLYPGFAERLEQEVKAL 596
            MFET+NVPAM++ +  +L+ YASG  TG  +  GDGV  T  I  GYALP+ I R D  GRDL  Y +  + +RG  SF T+AE +I  D+ +KL  IA D      +   S G + SYELPDG ++ I NER++ PE LF+PSL+G      SG+ +   QT+ +   +   R D+  NI++SG  T+YPG  ER+ +E+ AL
Sbjct:  124 MFETFNVPAMYVNIQAVLSLYASGRTTGCVLDSGDGVSHTVPIYEGYALPHAIVRLDLAGRDLTDYMMKILTERG-YSFTTTAEREIVRDIKEKLTYIALDFDQEMKTAAESSGLEKSYELPDGNVIVIGNERFRTPEVLFQPSLIGK---EASGIHECTFQTIMKCDVD--IRKDLYCNIVLSGGTTMYPGIGERMTKELTAL 321          
BLAST of CX300743 vs. ExPASy Swiss-Prot
Match: ACTB3_TAKRU (Actin, cytoplasmic 3 OS=Takifugu rubripes GN=actbc PE=2 SV=1)

HSP 1 Score: 152.91 bits (385), Expect = 1.118e-36
Identity = 86/205 (41.95%), Postives = 127/205 (61.95%), Query Frame = 3
Query:    3 MFETYNVPAMFIEVPNILNQYASGTKTGLTVCCGDGVMVTQAISNGYALPNTISRSDFGGRDLNQYFISTMYQRGERSFLTSAEFQIAGDVIQKLGLIAPD-------ASLTHSCGKLSYELPDGEILSIQNERYQIPEALFRPSLMGSSYDSISGVADLVQQTLSRVPEEDGARADVAKNIIVSGAPTLYPGFAERLEQEVKAL 596
            MFET+N PAM++ +  +L+ YASG  TG+ +  GDGV  T  I  GYALP+ I R D  GRDL  Y +  + +RG  SF T+AE +I  D+ +KL  +A D       AS + S  K SYELPDG++++I NER++ PEALF+PS +G      SG+ +    ++ +   +   R D+  N ++SG  T+YPG A+R+++E+ AL
Sbjct:  123 MFETFNTPAMYVAIQAVLSLYASGRTTGIVMDSGDGVTHTVPIYEGYALPHAILRLDLAGRDLTDYLMKILTERG-YSFTTTAEREIVRDIKEKLCYVALDFEQEMATASSSSSLEK-SYELPDGQVITIGNERFRCPEALFQPSFLGM---ESSGIHETTYNSIMKCDVD--IRKDLYANTVLSGGTTMYPGIADRMQKEITAL 320          
BLAST of CX300743 vs. ExPASy Swiss-Prot
Match: ACT1_ONCVO (Actin-1 OS=Onchocerca volvulus GN=act-1a PE=3 SV=1)

HSP 1 Score: 152.91 bits (385), Expect = 1.118e-36
Identity = 85/205 (41.46%), Postives = 127/205 (61.95%), Query Frame = 3
Query:    3 MFETYNVPAMFIEVPNILNQYASGTKTGLTVCCGDGVMVTQAISNGYALPNTISRSDFGGRDLNQYFISTMYQRGERSFLTSAEFQIAGDVIQKLGLIAPD------ASLTHSCGKLSYELPDGEILSIQNERYQIPEALFRPSLMGSSYDSISGVADLVQQTLSRVPEED-GARADVAKNIIVSGAPTLYPGFAERLEQEVKAL 596
            MFET+N PAM++ +  +L+ YASG  TG+ +  GDGV  T  I  GYALP+ I R D  GRDL  Y +  + +RG  SF T+AE +I  D+ +KL  +A D       + + S  + SYELPDG+++++ NER++ PEALF+PS +G         A + + T + + + D   R D+  NI++SG  T+YPG A+R+++EV AL
Sbjct:  124 MFETFNTPAMYVAIQAVLSLYASGRTTGIVLDSGDGVTHTVPIYEGYALPHAILRLDLAGRDLTDYLMKILTERG-YSFTTTAEREIVRDIKEKLCYVALDFEQEMATAASSSSLEKSYELPDGQVITVGNERFRCPEALFQPSFLGME------SAGIHESTYNSIMKCDIDIRKDLYANIVLSGGTTMYPGIADRMQKEVTAL 321          
BLAST of CX300743 vs. ExPASy Swiss-Prot
Match: ACT23_DICDI (Putative actin-23 OS=Dictyostelium discoideum GN=act23 PE=1 SV=1)

HSP 1 Score: 152.525 bits (384), Expect = 1.460e-36
Identity = 82/203 (40.39%), Postives = 126/203 (62.07%), Query Frame = 3
Query:    3 MFETYNVPAMFIEVPNILNQYASGTKTGLTVCCGDGVMVTQAISNGYALPNTISRSDFGGRDLNQYFISTMYQRGERSFLTSAEFQIAGDVIQKLGLIAPD-----ASLTHSCGKLSYELPDGEILSIQNERYQIPEALFRPSLMGSSYDSISGVADLVQQTLSRVPEEDGARADVAKNIIVSGAPTLYPGFAERLEQEVKAL 596
            MFET+N PAM++ +  +L+ YASG  TG+ +  GDGV  T  I  GYALP+ I R D  GRDL  Y +  + +RG  SF T+AE +I  D+ +KL  +A D      + T S  + SYELPDG++++I NER++ PEALF+PS +G      +G+ +    ++ +   +   R D+  N+++SG  T++PG A+R+ +E+ AL
Sbjct:  108 MFETFNTPAMYVAIQAVLSLYASGRTTGIVMDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDYLMKILTERG-YSFTTTAEREIVRDIKEKLAYVALDFEAEMQTATSSALEKSYELPDGQVITIGNERFRCPEALFQPSFLGM---ESAGIHETTYNSIMKCDVD--IRKDLYGNVVLSGGTTMFPGIADRMNKELTAL 304          
BLAST of CX300743 vs. ExPASy Swiss-Prot
Match: ACT1_ARTSX (Actin, clone 205 OS=Artemia sp. PE=2 SV=1)

HSP 1 Score: 152.525 bits (384), Expect = 1.460e-36
Identity = 87/205 (42.44%), Postives = 127/205 (61.95%), Query Frame = 3
Query:    3 MFETYNVPAMFIEVPNILNQYASGTKTGLTVCCGDGVMVTQAISNGYALPNTISRSDFGGRDLNQYFISTMYQRGERSFLTSAEFQIAGDVIQKLGLIAPD-------ASLTHSCGKLSYELPDGEILSIQNERYQIPEALFRPSLMGSSYDSISGVADLVQQTLSRVPEEDGARADVAKNIIVSGAPTLYPGFAERLEQEVKAL 596
            MFET+N PAM++ +  +L+ YASG  TG+ +  GDGV  T  I  GYALP+ I R D  GRDL  Y +  + +RG  SF T+AE +I  D+ +KL  +A D       A+ + S  K SYELPDG++L+I NER++ PEALF+PS +G       G+ + V  T+ +   +   R D+  N ++SG  T+YPG A+R+++E+ AL
Sbjct:  124 MFETFNSPAMYVAIQAVLSLYASGRTTGVVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDYLMKILTERG-YSFTTTAEREIVRDIKEKLCYVALDFEQEMATAAASTSLEK-SYELPDGQVLTIGNERFRCPEALFQPSFLGM---ESCGIHETVYNTIMKCDVD--IRKDLYANTVLSGGTTMYPGIADRMQKEITAL 321          
BLAST of CX300743 vs. ExPASy Swiss-Prot
Match: ACT11_ARATH (Actin-11 OS=Arabidopsis thaliana GN=ACT11 PE=1 SV=1)

HSP 1 Score: 152.525 bits (384), Expect = 1.460e-36
Identity = 85/204 (41.67%), Postives = 125/204 (61.27%), Query Frame = 3
Query:    3 MFETYNVPAMFIEVPNILNQYASGTKTGLTVCCGDGVMVTQAISNGYALPNTISRSDFGGRDLNQYFISTMYQRGERSFLTSAEFQIAGDVIQKLGLIAPD------ASLTHSCGKLSYELPDGEILSIQNERYQIPEALFRPSLMGSSYDSISGVADLVQQTLSRVPEEDGARADVAKNIIVSGAPTLYPGFAERLEQEVKAL 596
            MFET+N PAM++ +  +L+ YASG  TG+ +  GDGV  T  I  GYALP+ I R D  GRDL  Y +  + +RG  SF TSAE +I  DV +KL  IA D       + T S  + SYELPDG++++I  ER++ PE LF+PSL+G      +G+ +    ++ +   +   R D+  NI++SG  T++PG A+R+ +E+ AL
Sbjct:  125 MFETFNTPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDYLMKILTERG-YSFTTSAEREIVRDVKEKLAYIALDYEQEMETANTSSSVEKSYELPDGQVITIGGERFRCPEVLFQPSLVGM---EAAGIHETTYNSIMKCDVD--IRKDLYGNIVLSGGTTMFPGIADRMSKEITAL 322          
The following BLAST results are available for this feature:
BLAST of CX300743 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 420
Match NameE-valueIdentityDescription
ACT1_SCHMA1.724e-3741.18Actin-1 OS=Schistosoma mansoni PE=2 SV=1[more]
ACT_ACHBI2.941e-3744.12Actin OS=Achlya bisexualis PE=3 SV=1[more]
ACT3_BACDO5.016e-3741.95Actin-3, muscle-specific OS=Bactrocera dorsalis PE... [more]
ACT2_BACDO8.557e-3741.95Actin-2, muscle-specific OS=Bactrocera dorsalis PE... [more]
ACT1_PHYIN8.557e-3743.63Actin-1 OS=Phytophthora infestans GN=ACTA PE=2 SV=... [more]
ACTB3_TAKRU1.118e-3641.95Actin, cytoplasmic 3 OS=Takifugu rubripes GN=actbc... [more]
ACT1_ONCVO1.118e-3641.46Actin-1 OS=Onchocerca volvulus GN=act-1a PE=3 SV=1[more]
ACT23_DICDI1.460e-3640.39Putative actin-23 OS=Dictyostelium discoideum GN=a... [more]
ACT1_ARTSX1.460e-3642.44Actin, clone 205 OS=Artemia sp. PE=2 SV=1[more]
ACT11_ARATH1.460e-3641.67Actin-11 OS=Arabidopsis thaliana GN=ACT11 PE=1 SV=... [more]

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Properties
Property NameValue
Genbank descriptionC08001G05SK PhyRootSw1 Citrus sinensis cDNA clone C08001G05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX300743 ID=CX300743; Name=CX300743; organism=Citrus sinensis; type=EST; length=596bp
TGATGTTCGAAACGTATAACGTACCAGCAATGTTTATAGAAGTACCGAAT
ATCCTAAATCAATACGCGTCAGGCACCAAAACTGGATTGACGGTGTGTTG
TGGTGATGGCGTGATGGTGACGCAAGCGATCAGCAACGGTTATGCGTTGC
CTAATACTATTTCGCGCAGCGATTTCGGTGGTCGGGATCTGAATCAGTAT
TTTATATCGACGATGTACCAACGCGGCGAGCGATCGTTTCTCACGTCTGC
CGAGTTTCAGATCGCTGGCGATGTCATTCAAAAATTGGGTTTGATCGCTC
CCGATGCTTCTTTAACGCATTCTTGTGGCAAACTAAGCTACGAGCTACCT
GATGGCGAGATACTATCGATACAGAACGAAAGATATCAAATACCTGAAGC
TTTATTCAGACCTTCGTTGATGGGATCGAGCTACGATTCGATTTCGGGCG
TCGCCGATCTCGTACAGCAGACCTTGTCACGTGTTCCTGAAGAGGACGGC
GCACGTGCTGATGTAGCGAAGAATATCATCGTATCGGGTGCGCCTACATT
ATATCCAGGTTTCGCAGAGCGTTTAGAACAAGAAGTCAAAGCATTG
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