CX300741

Overview
NameCX300741
Unique NameCX300741
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length518
Libraries
Library NameType
PhyRootSw1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig3302 contig Csv1_Contig3302:172..689. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CX300741 vs. ExPASy Swiss-Prot
Match: Y5258_ARATH (Uncharacterized protein At5g22580 OS=Arabidopsis thaliana GN=At5g22580 PE=1 SV=1)

HSP 1 Score: 139.813 bits (351), Expect = 7.148e-33
Identity = 65/100 (65.00%), Postives = 78/100 (78.00%), Query Frame = 1 
Query:   40 FKHLVIVKFKEGVVVEDIVKGMKKLVSEIDAVKSFEWGQDVEGQEMLRQGFTHAFLMTFNKKEDYTTFASHPSHVEFSATFSAAIEKIVLLDFPTVLGKA 339
            FKHLV+VKFKE   V++I+KG++ LVS+ID VKSFEWG+D E  +MLRQGFTHAF MTF  K+ Y  F SHP HVEFSA F+A I+KIVLLDFP    K+
Sbjct:    6 FKHLVVVKFKEDTKVDEILKGLENLVSQIDTVKSFEWGEDKESHDMLRQGFTHAFSMTFENKDGYVAFTSHPLHVEFSAAFTAVIDKIVLLDFPVAAVKS 105
[Close]
BLAST of CX300741 vs. ExPASy Swiss-Prot
Match: POP3_ARATH (Probable protein Pop3 OS=Arabidopsis thaliana GN=At3g17210 PE=1 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 2.089e-16
Identity = 38/95 (40.00%), Postives = 64/95 (67.37%), Query Frame = 1 
Query:   43 KHLVIVKFKEGVV---VEDIVKGMKKLVSEIDAVKSFEWGQDVEGQEMLRQGFTHAFLMTFNKKEDYTTFASHPSHVEFSATFSAAIEKIVLLDF 318
            KH+++  FK+GV    +E+++KG   LV+ I+ +K+F WG+DV   E L QG+TH F  TF  KE    + +HP+HVEF+  F  +++K++++D+
Sbjct:    9 KHVLLASFKDGVSPEKIEELIKGYANLVNLIEPMKAFHWGKDVS-IENLHQGYTHIFESTFESKEAVAEYIAHPAHVEFATIFLGSLDKVLVIDY 102
The following BLAST results are available for this feature:
BLAST of CX300741 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
Y5258_ARATH7.148e-3365.00Uncharacterized protein At5g22580 OS=Arabidopsis t... [more]
POP3_ARATH2.089e-1640.00Probable protein Pop3 OS=Arabidopsis thaliana GN=A... [more]
back to top
Properties
Property NameValue
Genbank descriptionC08001G03SK PhyRootSw1 Citrus sinensis cDNA clone C08001G03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX300741 ID=CX300741; Name=CX300741; organism=Citrus sinensis; type=EST; length=518bp
GCATATATGGGTGAGGGTGAAGAGGCAGCAATGGGAGAGTTCAAGCACTT
GGTGATTGTTAAGTTCAAGGAAGGTGTGGTTGTGGAGGATATTGTCAAAG
GGATGAAAAAGCTAGTTTCAGAGATTGATGCTGTCAAATCTTTTGAATGG
GGCCAAGATGTAGAAGGGCAGGAGATGCTTAGGCAAGGCTTCACACATGC
ATTCTTGATGACATTCAACAAGAAGGAAGACTATACAACCTTTGCAAGCC
ATCCCAGCCACGTCGAATTCTCGGCTACATTTTCAGCTGCTATTGAGAAG
ATTGTCCTGCTTGATTTCCCTACCGTGCTTGGCAAAGCACCAGCAGCATG
ACACTCCAAAATTCTAGGCGATAATAATTAAGTGAGATTAGTATTAATCT
GCTATATGCGTGTGTATGTTTGGTTTGCTTATCTCTATGAGTTAATATTA
TTATTTGCCAGTATCAGTAACTATTTGGTTTGTCACAATATATAGCCTTA
TTATAAGTTCTTTAATTC
back to top