CX300736

Overview
NameCX300736
Unique NameCX300736
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length652
Libraries
Library NameType
PhyRootSw1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CX300736_ssr610 microsatellite CX300736_ssr610:610..621. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of CX300736 vs. ExPASy Swiss-Prot
Match: TLP1_PYRPY (Thaumatin-like protein 1 OS=Pyrus pyrifolia GN=TL1 PE=1 SV=1)

HSP 1 Score: 165.236 bits (417), Expect = 2.615e-40
Identity = 67/91 (73.63%), Postives = 81/91 (89.01%), Query Frame = 1
Query:    1 CKANVNAVCPSELAVKGSDGNVIACKSACAAFNEPQYCCTGAFNKPETCPPTKYSKIFKDQCPQAYSYAYDDRTSTFSCTGGPNYDITFCP 273
            C AN+N VCP+EL+ KGSDG+VI CKSAC A N+PQYCCTGA+  P+TCPPT +SK+FK+QCPQAYSYAYDD++STF+C GGPNY+ITFCP
Sbjct:  154 CAANINTVCPAELSDKGSDGSVIGCKSACLALNQPQYCCTGAYGTPDTCPPTDFSKVFKNQCPQAYSYAYDDKSSTFTCFGGPNYEITFCP 244          
BLAST of CX300736 vs. ExPASy Swiss-Prot
Match: TLP1_CASSA (Thaumatin-like protein 1 OS=Castanea sativa GN=TL1 PE=2 SV=1)

HSP 1 Score: 164.081 bits (414), Expect = 5.826e-40
Identity = 70/91 (76.92%), Postives = 80/91 (87.91%), Query Frame = 1
Query:    1 CKANVNAVCPSELAVKGSDGNVIACKSACAAFNEPQYCCTGAFNKPETCPPTKYSKIFKDQCPQAYSYAYDDRTSTFSCTGGPNYDITFCP 273
            C+ANVNAVCP+EL VKGSD +V+ACKSAC AFN+PQYCCTGAF+   TCP TKYS+IFK QCPQAYSYAYDD TSTF+C+G P+Y ITFCP
Sbjct:  153 CRANVNAVCPAELQVKGSDASVLACKSACTAFNQPQYCCTGAFDTARTCPATKYSRIFKQQCPQAYSYAYDDSTSTFTCSGAPDYVITFCP 243          
BLAST of CX300736 vs. ExPASy Swiss-Prot
Match: TLP1_PRUPE (Thaumatin-like protein 1 OS=Prunus persica PE=2 SV=1)

HSP 1 Score: 152.14 bits (383), Expect = 2.291e-36
Identity = 65/91 (71.43%), Postives = 77/91 (84.62%), Query Frame = 1
Query:    1 CKANVNAVCPSELAVKGSDGNVIACKSACAAFNEPQYCCTGAFNKPETCPPTKYSKIFKDQCPQAYSYAYDDRTSTFSCTGGPNYDITFCP 273
            C A++N VCP+ L VKGSDG+VIACKSAC AFN+P+YCCT   +KPETCPP  YSK+FK QCPQAYSYAYDD++STF+C+G P Y ITFCP
Sbjct:  156 CPADINKVCPAPLQVKGSDGSVIACKSACLAFNQPKYCCTPPNDKPETCPPPDYSKLFKTQCPQAYSYAYDDKSSTFTCSGRPAYLITFCP 246          
BLAST of CX300736 vs. ExPASy Swiss-Prot
Match: TLP_PRUAV (Glucan endo-1,3-beta-glucosidase OS=Prunus avium PE=1 SV=1)

HSP 1 Score: 150.984 bits (380), Expect = 5.104e-36
Identity = 65/91 (71.43%), Postives = 71/91 (78.02%), Query Frame = 1
Query:    1 CKANVNAVCPSELAVKGSDGNVIACKSACAAFNEPQYCCTGAFNKPETCPPTKYSKIFKDQCPQAYSYAYDDRTSTFSCTGGPNYDITFCP 273
            C ANVNAVCPSEL  KGSDG+V+AC SAC  F  PQYCCT   N PETCPPT YS+IF + CP AYSYAYDD+  TF+C GGPNY ITFCP
Sbjct:  155 CPANVNAVCPSELQKKGSDGSVVACLSACVKFGTPQYCCTPPQNTPETCPPTNYSEIFHNACPDAYSYAYDDKRGTFTCNGGPNYAITFCP 245          
BLAST of CX300736 vs. ExPASy Swiss-Prot
Match: TP1A_MALDO (Thaumatin-like protein 1a OS=Malus domestica GN=TL1 PE=1 SV=1)

HSP 1 Score: 149.058 bits (375), Expect = 1.939e-35
Identity = 63/91 (69.23%), Postives = 76/91 (83.52%), Query Frame = 1
Query:    1 CKANVNAVCPSELAVKGSDGNVIACKSACAAFNEPQYCCTGAFNKPETCPPTKYSKIFKDQCPQAYSYAYDDRTSTFSCTGGPNYDITFCP 273
            C ANVN VCP+ L VK +DG+VI+CKSAC AF + +YCCT   N PETCPPT+YS+IF+ QCPQAYSYAYDD+ STF+C+GGP+Y ITFCP
Sbjct:  156 CPANVNKVCPAPLQVKAADGSVISCKSACLAFGDSKYCCTPPNNTPETCPPTEYSEIFEKQCPQAYSYAYDDKNSTFTCSGGPDYVITFCP 246          
BLAST of CX300736 vs. ExPASy Swiss-Prot
Match: TP1B_MALDO (Thaumatin-like protein 1b (Fragment) OS=Malus domestica PE=2 SV=1)

HSP 1 Score: 146.747 bits (369), Expect = 9.626e-35
Identity = 61/91 (67.03%), Postives = 76/91 (83.52%), Query Frame = 1
Query:    1 CKANVNAVCPSELAVKGSDGNVIACKSACAAFNEPQYCCTGAFNKPETCPPTKYSKIFKDQCPQAYSYAYDDRTSTFSCTGGPNYDITFCP 273
            C ANVN  CP++L VK +DG+VI+CKSAC AF + +YCCT   + PETCPPT+YS+IF+ QCPQAYSYAYDD+ STF+C+GGP+Y ITFCP
Sbjct:  122 CPANVNMACPAQLQVKAADGSVISCKSACLAFGDSKYCCTPPNDTPETCPPTEYSEIFEKQCPQAYSYAYDDKNSTFTCSGGPDYVITFCP 212          
BLAST of CX300736 vs. ExPASy Swiss-Prot
Match: TLP2_PRUPE (Thaumatin-like protein 2 OS=Prunus persica PE=2 SV=1)

HSP 1 Score: 138.272 bits (347), Expect = 3.424e-32
Identity = 60/91 (65.93%), Postives = 67/91 (73.63%), Query Frame = 1
Query:    1 CKANVNAVCPSELAVKGSDGNVIACKSACAAFNEPQYCCTGAFNKPETCPPTKYSKIFKDQCPQAYSYAYDDRTSTFSCTGGPNYDITFCP 273
            C ANVN VCPSEL   GSDG+V+AC SAC  F EPQYCCT      E CPPT YS+IF +QCP AYSYA+DD    F+C+GGPNY ITFCP
Sbjct:  152 CAANVNLVCPSELQKIGSDGSVVACLSACVKFGEPQYCCTPPQETKEKCPPTNYSQIFHEQCPDAYSYAFDDNKGLFTCSGGPNYLITFCP 242          
BLAST of CX300736 vs. ExPASy Swiss-Prot
Match: PR5_ARATH (Pathogenesis-related protein 5 OS=Arabidopsis thaliana GN=At1g75040 PE=1 SV=1)

HSP 1 Score: 133.265 bits (334), Expect = 1.101e-30
Identity = 60/91 (65.93%), Postives = 70/91 (76.92%), Query Frame = 1
Query:    1 CKANVNAVCPSELAVKGSDGNVIACKSACAAFNEPQYCCTGAFNKPETCPPTKYSKIFKDQCPQAYSYAYDDRTSTFSCTGGPNYDITFCP 273
            C +++NA CP  L V   + NV+ACKSAC  FN  QYCC GA +KPETCPPT YS+IFK+ CP AYSYAYDD TSTF+CTG  NY+ITFCP
Sbjct:  151 CVSDLNAACPDMLKVMDQN-NVVACKSACERFNTDQYCCRGANDKPETCPPTDYSRIFKNACPDAYSYAYDDETSTFTCTGA-NYEITFCP 239          
BLAST of CX300736 vs. ExPASy Swiss-Prot
Match: TLPH_ARATH (Thaumatin-like protein OS=Arabidopsis thaliana GN=At1g18250 PE=2 SV=2)

HSP 1 Score: 120.939 bits (302), Expect = 5.656e-27
Identity = 54/92 (58.70%), Postives = 68/92 (73.91%), Query Frame = 1
Query:    1 CKANVNAVCPSELAVKGSDGN-VIACKSACAAFNEPQYCCTGAFNKPETCPPTKYSKIFKDQCPQAYSYAYDDRTSTFSCTGGPNYDITFCP 273
            C +++N +CP  L V+  +G  V+ACKSAC+AFN PQYCCTG F  P++C PT YSKIFK  CP+AYSYAYDD TS  +C+   NY +TFCP
Sbjct:  149 CVSDLNQMCPVGLQVRSRNGKRVVACKSACSAFNSPQYCCTGLFGNPQSCKPTAYSKIFKVACPKAYSYAYDDPTSIATCSKA-NYIVTFCP 239          
BLAST of CX300736 vs. ExPASy Swiss-Prot
Match: PRR3_JUNAS (Pathogenesis-related protein OS=Juniperus ashei PE=1 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 7.645e-24
Identity = 53/91 (58.24%), Postives = 61/91 (67.03%), Query Frame = 1
Query:    1 CKANVNAVCPSELAVKGSDGNVIACKSACAAFNEPQYCCTGAFNKPETCPPTKYSKIFKDQCPQAYSYAYDDRTSTFSCTGGPNYDITFCP 273
            CKA++NAVCPSEL V G       C SAC  F   QYCC  A+   + CP T YSKIFK+QCPQAYSYA DD T+TF+C  G +Y I FCP
Sbjct:  144 CKADINAVCPSELKVDGG------CNSACNVFKTDQYCCRNAY--VDNCPATNYSKIFKNQCPQAYSYAKDD-TATFACASGTDYSIVFCP 225          
The following BLAST results are available for this feature:
BLAST of CX300736 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 28
Match NameE-valueIdentityDescription
TLP1_PYRPY2.615e-4073.63Thaumatin-like protein 1 OS=Pyrus pyrifolia GN=TL1... [more]
TLP1_CASSA5.826e-4076.92Thaumatin-like protein 1 OS=Castanea sativa GN=TL1... [more]
TLP1_PRUPE2.291e-3671.43Thaumatin-like protein 1 OS=Prunus persica PE=2 SV... [more]
TLP_PRUAV5.104e-3671.43Glucan endo-1,3-beta-glucosidase OS=Prunus avium P... [more]
TP1A_MALDO1.939e-3569.23Thaumatin-like protein 1a OS=Malus domestica GN=TL... [more]
TP1B_MALDO9.626e-3567.03Thaumatin-like protein 1b (Fragment) OS=Malus dome... [more]
TLP2_PRUPE3.424e-3265.93Thaumatin-like protein 2 OS=Prunus persica PE=2 SV... [more]
PR5_ARATH1.101e-3065.93Pathogenesis-related protein 5 OS=Arabidopsis thal... [more]
TLPH_ARATH5.656e-2758.70Thaumatin-like protein OS=Arabidopsis thaliana GN=... [more]
PRR3_JUNAS7.645e-2458.24Pathogenesis-related protein OS=Juniperus ashei PE... [more]

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Properties
Property NameValue
Genbank descriptionC08001F10SK PhyRootSw1 Citrus sinensis cDNA clone C08001F10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX300736 ID=CX300736; Name=CX300736; organism=Citrus sinensis; type=EST; length=652bp
TGTAAAGCCAACGTGAATGCTGTTTGTCCATCAGAGCTAGCAGTCAAAGG
ATCCGATGGGAATGTTATTGCTTGCAAGAGTGCATGTGCAGCTTTTAATG
AACCACAATATTGTTGCACTGGGGCATTCAATAAACCTGAGACTTGCCCA
CCGACTAAATATTCTAAGATTTTCAAAGACCAGTGCCCTCAAGCTTATAG
CTATGCTTATGATGATCGCACTAGCACATTTTCTTGCACTGGTGGTCCTA
ATTACGATATTACTTTCTGTCCCTGAGAGATATTAGTAAGTAACGGAGGT
TGCCTAAAACTTTCAGCTTAAAATTTTAACATAATTTTAAGGTAATGATA
TCATGCAATATTTAATAGTAGATGATGAAAATAAAAGATAATTTTTTGTG
GTATCAAATTCATTCATCATCTCTGTTAAATAAATTGCATGAAATCATGG
ACTCAAAATTCATGTTAAGATTTAAGTTAAAATAGCACCATCAATCCTCT
GTAAGCTTGAAATAAAAGTAATAAGTTGTCACATTGTATCAACAAAATAA
GTCCTGACAATGGACGACTTTCTATGCTAATATTTGTCATGGTGTATGTA
TGACAAAACATAAATAAATAAGAGAAAGTTATCATAAAAAAAAAAAAAAA
AA
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