CX300729

Overview
NameCX300729
Unique NameCX300729
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length559
Libraries
Library NameType
PhyRootSw1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX300729 vs. ExPASy Swiss-Prot
Match: SNF12_ARATH (SWI/SNF complex component SNF12 homolog OS=Arabidopsis thaliana GN=At5g14170 PE=1 SV=1)

HSP 1 Score: 222.246 bits (565), Expect = 1.298e-57
Identity = 109/153 (71.24%), Postives = 129/153 (84.31%), Query Frame = 3
Query:   30 ISQKISQXXXXXXXXXXEHKIKLSGNSPAGTSCYDMLVDVPFPLEKEMAAFLANMEKNKEIDACDELICASIKKIHEHRRRRAFFLGFSQSPGEFINALIASQSKDLKLVAGDASRNPEKECRSDFFNQPWVEDAVIRYMNRK-SAGSDAAGS 485
            +SQKIS           EHKIKLSGN+PA ++CYD+LVDVPFP+++++   LAN EKNKEI+ACDE ICA+I+KIHEHRRRRAFFLGFSQSP EFINALI SQSKDLK+VAG+ASRN E+E RSDFFNQPWVEDAVIRY+NR+ +AG+D  GS
Sbjct:  381 VSQKISHHLSPPPPIHLEHKIKLSGNNPAVSACYDVLVDVPFPIQRDLNNLLANAEKNKEIEACDEAICAAIRKIHEHRRRRAFFLGFSQSPVEFINALIESQSKDLKVVAGEASRNAERERRSDFFNQPWVEDAVIRYLNRRPAAGNDGPGS 533          
BLAST of CX300729 vs. ExPASy Swiss-Prot
Match: SMRD3_MOUSE (SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily D member 3 OS=Mus musculus GN=Smarcd3 PE=1 SV=2)

HSP 1 Score: 95.5153 bits (236), Expect = 1.833e-19
Identity = 49/139 (35.25%), Postives = 84/139 (60.43%), Query Frame = 3
Query:   30 ISQKISQXXXXXXXXXXEHKIKLSGNSPAGTSCYDMLVDVPFPLEKEMAAFLANMEKNKEIDACDELICASIKKIHEHRRRRAFFLGFSQSPGEFINALIASQSKDLKLVAGDASRNPEKECRSDFFNQPWVEDAVIRY 446
            I Q+++            H I +  +    T+CYD+ V+V  PL+ +M++FL +    +EI A D  I  +I+ I++ + +R F L FS+ P  ++  L+ SQS+DLK++  D + NPE+E R++F++QPW ++AV RY
Sbjct:  325 IPQRLTALLLPPDPIVINHVISVDPSDQKKTACYDIDVEVEEPLKGQMSSFLLSTANQQEISALDSKIHETIESINQLKIQRDFMLSFSRDPKGYVQDLLRSQSRDLKVMT-DVAGNPEEERRAEFYHQPWSQEAVSRY 462          
BLAST of CX300729 vs. ExPASy Swiss-Prot
Match: SMRD3_HUMAN (SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily D member 3 OS=Homo sapiens GN=SMARCD3 PE=1 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 1.833e-19
Identity = 49/139 (35.25%), Postives = 84/139 (60.43%), Query Frame = 3
Query:   30 ISQKISQXXXXXXXXXXEHKIKLSGNSPAGTSCYDMLVDVPFPLEKEMAAFLANMEKNKEIDACDELICASIKKIHEHRRRRAFFLGFSQSPGEFINALIASQSKDLKLVAGDASRNPEKECRSDFFNQPWVEDAVIRY 446
            I Q+++            H I +  +    T+CYD+ V+V  PL+ +M++FL +    +EI A D  I  +I+ I++ + +R F L FS+ P  ++  L+ SQS+DLK++  D + NPE+E R++F++QPW ++AV RY
Sbjct:  325 IPQRLTALLLPPDPIVINHVISVDPSDQKKTACYDIDVEVEEPLKGQMSSFLLSTANQQEISALDSKIHETIESINQLKIQRDFMLSFSRDPKGYVQDLLRSQSRDLKVMT-DVAGNPEEERRAEFYHQPWSQEAVSRY 462          
BLAST of CX300729 vs. ExPASy Swiss-Prot
Match: SMRD2_RAT (SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily D member 2 OS=Rattus norvegicus GN=Smarcd2 PE=2 SV=2)

HSP 1 Score: 91.6633 bits (226), Expect = 2.647e-18
Identity = 48/125 (38.40%), Postives = 77/125 (61.60%), Query Frame = 3
Query:   84 HKIKLSGNSPAGTSCYDMLVDVPFPLEKEMAAFLANMEKNKEIDACDELICASIKKIHEHRRRRAFFLGFSQSPGEFINALIASQSKDLKLVAGDASRNPEKECRSDFFNQPWVEDAVIRYMNRK 458
            H I +  N    T+CYD+ V+V  PL+ +M+ FLA+    +EI + D  I  +I+ I++ + +R F L FS  P +FI   + SQ +DLK++  D   NPE+E R+ F++QPW ++AV R++  K
Sbjct:  316 HVISVDPNDQKKTACYDIDVEVDDPLKAQMSNFLASTTNQQEIASLDVKIHETIESINQLKTQRDFMLSFSTEPQDFIQEWLRSQRRDLKIIT-DVIGNPEEERRAAFYHQPWAQEAVGRHIFAK 439          
BLAST of CX300729 vs. ExPASy Swiss-Prot
Match: SMRD2_MOUSE (SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily D member 2 OS=Mus musculus GN=Smarcd2 PE=2 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 2.647e-18
Identity = 48/125 (38.40%), Postives = 77/125 (61.60%), Query Frame = 3
Query:   84 HKIKLSGNSPAGTSCYDMLVDVPFPLEKEMAAFLANMEKNKEIDACDELICASIKKIHEHRRRRAFFLGFSQSPGEFINALIASQSKDLKLVAGDASRNPEKECRSDFFNQPWVEDAVIRYMNRK 458
            H I +  N    T+CYD+ V+V  PL+ +M+ FLA+    +EI + D  I  +I+ I++ + +R F L FS  P +FI   + SQ +DLK++  D   NPE+E R+ F++QPW ++AV R++  K
Sbjct:  316 HVISVDPNDQKKTACYDIDVEVDDPLKAQMSNFLASTTNQQEIASLDVKIHETIESINQLKTQRDFMLSFSTEPQDFIQEWLRSQRRDLKIIT-DVIGNPEEERRAAFYHQPWAQEAVGRHIFAK 439          
BLAST of CX300729 vs. ExPASy Swiss-Prot
Match: SMRD2_HUMAN (SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily D member 2 OS=Homo sapiens GN=SMARCD2 PE=1 SV=2)

HSP 1 Score: 91.6633 bits (226), Expect = 2.647e-18
Identity = 48/125 (38.40%), Postives = 77/125 (61.60%), Query Frame = 3
Query:   84 HKIKLSGNSPAGTSCYDMLVDVPFPLEKEMAAFLANMEKNKEIDACDELICASIKKIHEHRRRRAFFLGFSQSPGEFINALIASQSKDLKLVAGDASRNPEKECRSDFFNQPWVEDAVIRYMNRK 458
            H I +  N    T+CYD+ V+V  PL+ +M+ FLA+    +EI + D  I  +I+ I++ + +R F L FS  P +FI   + SQ +DLK++  D   NPE+E R+ F++QPW ++AV R++  K
Sbjct:  316 HVISVDPNDQKKTACYDIDVEVDDPLKAQMSNFLASTTNQQEIASLDVKIHETIESINQLKTQRDFMLSFSTDPQDFIQEWLRSQRRDLKIIT-DVIGNPEEERRAAFYHQPWAQEAVGRHIFAK 439          
BLAST of CX300729 vs. ExPASy Swiss-Prot
Match: SMRD1_MOUSE (SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily D member 1 OS=Mus musculus GN=Smarcd1 PE=1 SV=3)

HSP 1 Score: 88.1965 bits (217), Expect = 2.926e-17
Identity = 47/125 (37.60%), Postives = 73/125 (58.40%), Query Frame = 3
Query:   84 HKIKLSGNSPAGTSCYDMLVDVPFPLEKEMAAFLANMEKNKEIDACDELICASIKKIHEHRRRRAFFLGFSQSPGEFINALIASQSKDLKLVAGDASRNPEKECRSDFFNQPWVEDAVIRYMNRK 458
            H I +  N    T+CYD+ V+V   L+ +M +FL +    +EI   D  I  +I+ I++ + +R F L F++ P  FIN  + SQ +DLK +  D   NPE+E R++F+ QPW ++AV RY   K
Sbjct:  375 HVISVDPNDQKKTACYDIDVEVDDTLKTQMNSFLLSTASQQEIATLDNKIHETIETINQLKTQREFMLSFARDPQGFINDWLQSQCRDLKTMT-DVVGNPEEERRAEFYFQPWAQEAVCRYFYSK 498          
BLAST of CX300729 vs. ExPASy Swiss-Prot
Match: SMRD1_HUMAN (SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily D member 1 OS=Homo sapiens GN=SMARCD1 PE=1 SV=2)

HSP 1 Score: 88.1965 bits (217), Expect = 2.926e-17
Identity = 47/125 (37.60%), Postives = 73/125 (58.40%), Query Frame = 3
Query:   84 HKIKLSGNSPAGTSCYDMLVDVPFPLEKEMAAFLANMEKNKEIDACDELICASIKKIHEHRRRRAFFLGFSQSPGEFINALIASQSKDLKLVAGDASRNPEKECRSDFFNQPWVEDAVIRYMNRK 458
            H I +  N    T+CYD+ V+V   L+ +M +FL +    +EI   D  I  +I+ I++ + +R F L F++ P  FIN  + SQ +DLK +  D   NPE+E R++F+ QPW ++AV RY   K
Sbjct:  375 HVISVDPNDQKKTACYDIDVEVDDTLKTQMNSFLLSTASQQEIATLDNKIHETIETINQLKTQREFMLSFARDPQGFINDWLQSQCRDLKTMT-DVVGNPEEERRAEFYFQPWAQEAVCRYFYSK 498          
BLAST of CX300729 vs. ExPASy Swiss-Prot
Match: SMRD1_BOVIN (SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily D member 1 OS=Bos taurus GN=SMARCD1 PE=2 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 7.208e-16
Identity = 45/125 (36.00%), Postives = 72/125 (57.60%), Query Frame = 3
Query:   84 HKIKLSGNSPAGTSCYDMLVDVPFPLEKEMAAFLANMEKNKEIDACDELICASIKKIHEHRRRRAFFLGFSQSPGEFINALIASQSKDLKLVAGDASRNPEKECRSDFFNQPWVEDAVIRYMNRK 458
            H I +  N    T+CYD+  +V   L+ +M +FL +    +EI   D  I  +I+ I++ + +R F L F++ P  FIN  + SQ +DLK++  D   N E+E R++F+ QPW ++AV RY   K
Sbjct:  375 HVISVDPNDQKKTACYDIDEEVDDTLKTQMNSFLLSTASQQEIATLDNKIHETIETINQLKTQREFMLSFARDPQGFINDWLQSQCRDLKVMT-DVVGNSEEERRAEFYFQPWAQEAVCRYFYSK 498          
BLAST of CX300729 vs. ExPASy Swiss-Prot
Match: SSR3_SCHPO (SWI/SNF and RSC complexes subunit ssr3 OS=Schizosaccharomyces pombe GN=ssr3 PE=1 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 2.834e-12
Identity = 36/123 (29.27%), Postives = 68/123 (55.28%), Query Frame = 3
Query:   84 HKIKLSGNSPAGTSCYDMLVDVPFPLEKEMAAFLANMEKNKEIDACDELICASIKKIHEHRRRRAFFLGFSQSPGEFINALIASQSKDLKLVAGDASRNPEKECRSDFFNQPWVEDAVIRYMN 452
            + I +S ++    + +D+ ++   P   ++ +FLA M    +I + D+ +   I+ I   + +  F   FS+SP EFIN  I SQS+DL++V    + N  ++  +D++ QPWV ++   Y+N
Sbjct:  286 YTINVSEHTVEKVTIFDIRINTEDPRHSQIRSFLATMMSQDKIRSIDDKLTELIQAITYSQSKYDFMKKFSESPIEFINEWIESQSRDLEIVLDGTNMNYAEKRSADYYQQPWVHESAFHYLN 408          
The following BLAST results are available for this feature:
BLAST of CX300729 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 10
Match NameE-valueIdentityDescription
SNF12_ARATH1.298e-5771.24SWI/SNF complex component SNF12 homolog OS=Arabido... [more]
SMRD3_MOUSE1.833e-1935.25SWI/SNF-related matrix-associated actin-dependent ... [more]
SMRD3_HUMAN1.833e-1935.25SWI/SNF-related matrix-associated actin-dependent ... [more]
SMRD2_RAT2.647e-1838.40SWI/SNF-related matrix-associated actin-dependent ... [more]
SMRD2_MOUSE2.647e-1838.40SWI/SNF-related matrix-associated actin-dependent ... [more]
SMRD2_HUMAN2.647e-1838.40SWI/SNF-related matrix-associated actin-dependent ... [more]
SMRD1_MOUSE2.926e-1737.60SWI/SNF-related matrix-associated actin-dependent ... [more]
SMRD1_HUMAN2.926e-1737.60SWI/SNF-related matrix-associated actin-dependent ... [more]
SMRD1_BOVIN7.208e-1636.00SWI/SNF-related matrix-associated actin-dependent ... [more]
SSR3_SCHPO2.834e-1229.27SWI/SNF and RSC complexes subunit ssr3 OS=Schizosa... [more]
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Properties
Property NameValue
Genbank descriptionC08001F03SK PhyRootSw1 Citrus sinensis cDNA clone C08001F03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX300729 ID=CX300729; Name=CX300729; organism=Citrus sinensis; type=EST; length=559bp
CTCGTGCCGAATTCGGCACGAGGGCTACGATTTCCCAGAAGATTTCACAG
CATTTAATACCTCCACCACCTATACATTTGGAGCACAAGATAAAGCTTTC
AGGGAATAGCCCTGCTGGAACTTCTTGTTATGACATGCTTGTCGATGTGC
CTTTTCCACTAGAAAAGGAAATGGCTGCCTTTTTGGCAAACATGGAAAAG
AACAAAGAGATTGATGCTTGTGATGAACTAATATGTGCTTCTATAAAGAA
GATACATGAGCATCGCCGGAGGCGGGCTTTCTTTCTTGGTTTCAGTCAGT
CTCCAGGGGAGTTTATTAATGCTTTAATTGCTTCTCAAAGTAAGGATCTA
AAGCTTGTTGCTGGAGACGCTAGCCGTAATCCAGAAAAAGAGTGTCGGTC
TGATTTCTTTAATCAGCCATGGGTTGAAGACGCTGTCATCCGTTACATGA
ATCGCAAATCTGCTGGGAGTGATGCTGCTGGAAGCACTTAATATGGATAC
CGTGAATCACTAACAGGTGGTAAATTAACTTCACCGCATCACACTGTTTT
CCTTCTCTG
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