CX300729
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CX300729 vs. ExPASy Swiss-Prot
Match: SNF12_ARATH (SWI/SNF complex component SNF12 homolog OS=Arabidopsis thaliana GN=At5g14170 PE=1 SV=1) HSP 1 Score: 222.246 bits (565), Expect = 1.298e-57 Identity = 109/153 (71.24%), Postives = 129/153 (84.31%), Query Frame = 3 Query: 30 ISQKISQXXXXXXXXXXEHKIKLSGNSPAGTSCYDMLVDVPFPLEKEMAAFLANMEKNKEIDACDELICASIKKIHEHRRRRAFFLGFSQSPGEFINALIASQSKDLKLVAGDASRNPEKECRSDFFNQPWVEDAVIRYMNRK-SAGSDAAGS 485 +SQKIS EHKIKLSGN+PA ++CYD+LVDVPFP+++++ LAN EKNKEI+ACDE ICA+I+KIHEHRRRRAFFLGFSQSP EFINALI SQSKDLK+VAG+ASRN E+E RSDFFNQPWVEDAVIRY+NR+ +AG+D GS Sbjct: 381 VSQKISHHLSPPPPIHLEHKIKLSGNNPAVSACYDVLVDVPFPIQRDLNNLLANAEKNKEIEACDEAICAAIRKIHEHRRRRAFFLGFSQSPVEFINALIESQSKDLKVVAGEASRNAERERRSDFFNQPWVEDAVIRYLNRRPAAGNDGPGS 533
BLAST of CX300729 vs. ExPASy Swiss-Prot
Match: SMRD3_MOUSE (SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily D member 3 OS=Mus musculus GN=Smarcd3 PE=1 SV=2) HSP 1 Score: 95.5153 bits (236), Expect = 1.833e-19 Identity = 49/139 (35.25%), Postives = 84/139 (60.43%), Query Frame = 3 Query: 30 ISQKISQXXXXXXXXXXEHKIKLSGNSPAGTSCYDMLVDVPFPLEKEMAAFLANMEKNKEIDACDELICASIKKIHEHRRRRAFFLGFSQSPGEFINALIASQSKDLKLVAGDASRNPEKECRSDFFNQPWVEDAVIRY 446 I Q+++ H I + + T+CYD+ V+V PL+ +M++FL + +EI A D I +I+ I++ + +R F L FS+ P ++ L+ SQS+DLK++ D + NPE+E R++F++QPW ++AV RY Sbjct: 325 IPQRLTALLLPPDPIVINHVISVDPSDQKKTACYDIDVEVEEPLKGQMSSFLLSTANQQEISALDSKIHETIESINQLKIQRDFMLSFSRDPKGYVQDLLRSQSRDLKVMT-DVAGNPEEERRAEFYHQPWSQEAVSRY 462
BLAST of CX300729 vs. ExPASy Swiss-Prot
Match: SMRD3_HUMAN (SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily D member 3 OS=Homo sapiens GN=SMARCD3 PE=1 SV=1) HSP 1 Score: 95.5153 bits (236), Expect = 1.833e-19 Identity = 49/139 (35.25%), Postives = 84/139 (60.43%), Query Frame = 3 Query: 30 ISQKISQXXXXXXXXXXEHKIKLSGNSPAGTSCYDMLVDVPFPLEKEMAAFLANMEKNKEIDACDELICASIKKIHEHRRRRAFFLGFSQSPGEFINALIASQSKDLKLVAGDASRNPEKECRSDFFNQPWVEDAVIRY 446 I Q+++ H I + + T+CYD+ V+V PL+ +M++FL + +EI A D I +I+ I++ + +R F L FS+ P ++ L+ SQS+DLK++ D + NPE+E R++F++QPW ++AV RY Sbjct: 325 IPQRLTALLLPPDPIVINHVISVDPSDQKKTACYDIDVEVEEPLKGQMSSFLLSTANQQEISALDSKIHETIESINQLKIQRDFMLSFSRDPKGYVQDLLRSQSRDLKVMT-DVAGNPEEERRAEFYHQPWSQEAVSRY 462
BLAST of CX300729 vs. ExPASy Swiss-Prot
Match: SMRD2_RAT (SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily D member 2 OS=Rattus norvegicus GN=Smarcd2 PE=2 SV=2) HSP 1 Score: 91.6633 bits (226), Expect = 2.647e-18 Identity = 48/125 (38.40%), Postives = 77/125 (61.60%), Query Frame = 3 Query: 84 HKIKLSGNSPAGTSCYDMLVDVPFPLEKEMAAFLANMEKNKEIDACDELICASIKKIHEHRRRRAFFLGFSQSPGEFINALIASQSKDLKLVAGDASRNPEKECRSDFFNQPWVEDAVIRYMNRK 458 H I + N T+CYD+ V+V PL+ +M+ FLA+ +EI + D I +I+ I++ + +R F L FS P +FI + SQ +DLK++ D NPE+E R+ F++QPW ++AV R++ K Sbjct: 316 HVISVDPNDQKKTACYDIDVEVDDPLKAQMSNFLASTTNQQEIASLDVKIHETIESINQLKTQRDFMLSFSTEPQDFIQEWLRSQRRDLKIIT-DVIGNPEEERRAAFYHQPWAQEAVGRHIFAK 439
BLAST of CX300729 vs. ExPASy Swiss-Prot
Match: SMRD2_MOUSE (SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily D member 2 OS=Mus musculus GN=Smarcd2 PE=2 SV=1) HSP 1 Score: 91.6633 bits (226), Expect = 2.647e-18 Identity = 48/125 (38.40%), Postives = 77/125 (61.60%), Query Frame = 3 Query: 84 HKIKLSGNSPAGTSCYDMLVDVPFPLEKEMAAFLANMEKNKEIDACDELICASIKKIHEHRRRRAFFLGFSQSPGEFINALIASQSKDLKLVAGDASRNPEKECRSDFFNQPWVEDAVIRYMNRK 458 H I + N T+CYD+ V+V PL+ +M+ FLA+ +EI + D I +I+ I++ + +R F L FS P +FI + SQ +DLK++ D NPE+E R+ F++QPW ++AV R++ K Sbjct: 316 HVISVDPNDQKKTACYDIDVEVDDPLKAQMSNFLASTTNQQEIASLDVKIHETIESINQLKTQRDFMLSFSTEPQDFIQEWLRSQRRDLKIIT-DVIGNPEEERRAAFYHQPWAQEAVGRHIFAK 439
BLAST of CX300729 vs. ExPASy Swiss-Prot
Match: SMRD2_HUMAN (SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily D member 2 OS=Homo sapiens GN=SMARCD2 PE=1 SV=2) HSP 1 Score: 91.6633 bits (226), Expect = 2.647e-18 Identity = 48/125 (38.40%), Postives = 77/125 (61.60%), Query Frame = 3 Query: 84 HKIKLSGNSPAGTSCYDMLVDVPFPLEKEMAAFLANMEKNKEIDACDELICASIKKIHEHRRRRAFFLGFSQSPGEFINALIASQSKDLKLVAGDASRNPEKECRSDFFNQPWVEDAVIRYMNRK 458 H I + N T+CYD+ V+V PL+ +M+ FLA+ +EI + D I +I+ I++ + +R F L FS P +FI + SQ +DLK++ D NPE+E R+ F++QPW ++AV R++ K Sbjct: 316 HVISVDPNDQKKTACYDIDVEVDDPLKAQMSNFLASTTNQQEIASLDVKIHETIESINQLKTQRDFMLSFSTDPQDFIQEWLRSQRRDLKIIT-DVIGNPEEERRAAFYHQPWAQEAVGRHIFAK 439
BLAST of CX300729 vs. ExPASy Swiss-Prot
Match: SMRD1_MOUSE (SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily D member 1 OS=Mus musculus GN=Smarcd1 PE=1 SV=3) HSP 1 Score: 88.1965 bits (217), Expect = 2.926e-17 Identity = 47/125 (37.60%), Postives = 73/125 (58.40%), Query Frame = 3 Query: 84 HKIKLSGNSPAGTSCYDMLVDVPFPLEKEMAAFLANMEKNKEIDACDELICASIKKIHEHRRRRAFFLGFSQSPGEFINALIASQSKDLKLVAGDASRNPEKECRSDFFNQPWVEDAVIRYMNRK 458 H I + N T+CYD+ V+V L+ +M +FL + +EI D I +I+ I++ + +R F L F++ P FIN + SQ +DLK + D NPE+E R++F+ QPW ++AV RY K Sbjct: 375 HVISVDPNDQKKTACYDIDVEVDDTLKTQMNSFLLSTASQQEIATLDNKIHETIETINQLKTQREFMLSFARDPQGFINDWLQSQCRDLKTMT-DVVGNPEEERRAEFYFQPWAQEAVCRYFYSK 498
BLAST of CX300729 vs. ExPASy Swiss-Prot
Match: SMRD1_HUMAN (SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily D member 1 OS=Homo sapiens GN=SMARCD1 PE=1 SV=2) HSP 1 Score: 88.1965 bits (217), Expect = 2.926e-17 Identity = 47/125 (37.60%), Postives = 73/125 (58.40%), Query Frame = 3 Query: 84 HKIKLSGNSPAGTSCYDMLVDVPFPLEKEMAAFLANMEKNKEIDACDELICASIKKIHEHRRRRAFFLGFSQSPGEFINALIASQSKDLKLVAGDASRNPEKECRSDFFNQPWVEDAVIRYMNRK 458 H I + N T+CYD+ V+V L+ +M +FL + +EI D I +I+ I++ + +R F L F++ P FIN + SQ +DLK + D NPE+E R++F+ QPW ++AV RY K Sbjct: 375 HVISVDPNDQKKTACYDIDVEVDDTLKTQMNSFLLSTASQQEIATLDNKIHETIETINQLKTQREFMLSFARDPQGFINDWLQSQCRDLKTMT-DVVGNPEEERRAEFYFQPWAQEAVCRYFYSK 498
BLAST of CX300729 vs. ExPASy Swiss-Prot
Match: SMRD1_BOVIN (SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily D member 1 OS=Bos taurus GN=SMARCD1 PE=2 SV=1) HSP 1 Score: 83.5741 bits (205), Expect = 7.208e-16 Identity = 45/125 (36.00%), Postives = 72/125 (57.60%), Query Frame = 3 Query: 84 HKIKLSGNSPAGTSCYDMLVDVPFPLEKEMAAFLANMEKNKEIDACDELICASIKKIHEHRRRRAFFLGFSQSPGEFINALIASQSKDLKLVAGDASRNPEKECRSDFFNQPWVEDAVIRYMNRK 458 H I + N T+CYD+ +V L+ +M +FL + +EI D I +I+ I++ + +R F L F++ P FIN + SQ +DLK++ D N E+E R++F+ QPW ++AV RY K Sbjct: 375 HVISVDPNDQKKTACYDIDEEVDDTLKTQMNSFLLSTASQQEIATLDNKIHETIETINQLKTQREFMLSFARDPQGFINDWLQSQCRDLKVMT-DVVGNSEEERRAEFYFQPWAQEAVCRYFYSK 498
BLAST of CX300729 vs. ExPASy Swiss-Prot
Match: SSR3_SCHPO (SWI/SNF and RSC complexes subunit ssr3 OS=Schizosaccharomyces pombe GN=ssr3 PE=1 SV=1) HSP 1 Score: 71.633 bits (174), Expect = 2.834e-12 Identity = 36/123 (29.27%), Postives = 68/123 (55.28%), Query Frame = 3 Query: 84 HKIKLSGNSPAGTSCYDMLVDVPFPLEKEMAAFLANMEKNKEIDACDELICASIKKIHEHRRRRAFFLGFSQSPGEFINALIASQSKDLKLVAGDASRNPEKECRSDFFNQPWVEDAVIRYMN 452 + I +S ++ + +D+ ++ P ++ +FLA M +I + D+ + I+ I + + F FS+SP EFIN I SQS+DL++V + N ++ +D++ QPWV ++ Y+N Sbjct: 286 YTINVSEHTVEKVTIFDIRINTEDPRHSQIRSFLATMMSQDKIRSIDDKLTELIQAITYSQSKYDFMKKFSESPIEFINEWIESQSRDLEIVLDGTNMNYAEKRSADYYQQPWVHESAFHYLN 408 The following BLAST results are available for this feature:
BLAST of CX300729 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 10
Properties
Sequences
The
following sequences are available for this feature:
EST sequence >CX300729 ID=CX300729; Name=CX300729; organism=Citrus sinensis; type=EST; length=559bpback to top |