CX300727

Overview
NameCX300727
Unique NameCX300727
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length585
Libraries
Library NameType
PhyRootSw1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX300727 vs. ExPASy Swiss-Prot
Match: SYWC_MOUSE (Tryptophanyl-tRNA synthetase, cytoplasmic OS=Mus musculus GN=Wars PE=1 SV=2)

HSP 1 Score: 115.161 bits (287), Expect = 2.464e-25
Identity = 60/128 (46.88%), Postives = 83/128 (64.84%), Query Frame = 2
Query:    2 SASDPNSALYVTDSXXXXXXXXXXYAFSGGQESVELHRKLGANLEVDIPVKYLSFFLEDDAELEHIKKEYGAGGMLTGEVKQRLAQVLTELVERHQVARAAVTDEVTLLHAITETE*SFCKLCDIIDS 385
            SASDPNS++++TD+          +AFSGG+++VE HR+ G N EVD+   YL+FFLEDD  LE I+K+Y +G MLTGE+K+ L  VL  L+  HQ  R AVT+E T+   +T  + SF   C   D+
Sbjct:  355 SASDPNSSIFLTDTAKQIKSKVNKHAFSGGRDTVEEHRQFGGNCEVDVSFMYLTFFLEDDDRLEQIRKDYTSGAMLTGELKKTLIDVLQPLIAEHQARRKAVTEE-TVKEFMTPRQLSFHFQCFCFDT 481          
BLAST of CX300727 vs. ExPASy Swiss-Prot
Match: SYWC_RAT (Tryptophanyl-tRNA synthetase, cytoplasmic OS=Rattus norvegicus GN=Wars PE=1 SV=2)

HSP 1 Score: 113.235 bits (282), Expect = 9.362e-25
Identity = 59/128 (46.09%), Postives = 82/128 (64.06%), Query Frame = 2
Query:    2 SASDPNSALYVTDSXXXXXXXXXXYAFSGGQESVELHRKLGANLEVDIPVKYLSFFLEDDAELEHIKKEYGAGGMLTGEVKQRLAQVLTELVERHQVARAAVTDEVTLLHAITETE*SFCKLCDIIDS 385
            SASDPNS++++TD+          +AFSGG+++VE HR+ G N EVD+   YL+FFLEDD  LE I+K+Y +G MLTGE+K+ L  VL  L+  HQ  R AVT+E T+   +   + SF   C   D+
Sbjct:  355 SASDPNSSIFLTDTAKQIKSKVNKHAFSGGRDTVEEHRQFGGNCEVDVSFMYLTFFLEDDDSLEQIRKDYTSGAMLTGELKKTLIDVLQPLIAEHQARRKAVTEE-TVKEFMAPRQLSFHFQCFCFDT 481          
BLAST of CX300727 vs. ExPASy Swiss-Prot
Match: SYWC_RABIT (Tryptophanyl-tRNA synthetase, cytoplasmic OS=Oryctolagus cuniculus GN=WARS PE=2 SV=3)

HSP 1 Score: 113.235 bits (282), Expect = 9.362e-25
Identity = 53/106 (50.00%), Postives = 74/106 (69.81%), Query Frame = 2
Query:    2 SASDPNSALYVTDSXXXXXXXXXXYAFSGGQESVELHRKLGANLEVDIPVKYLSFFLEDDAELEHIKKEYGAGGMLTGEVKQRLAQVLTELVERHQVARAAVTDEV 319
            SASDPNS++++TD+          +AFSGG++++E HR+ G N +VD+   YL+FFLEDD +LE I+K+Y +G MLTGE+K+ L  VL  LV  HQ  R  VTDE+
Sbjct:  355 SASDPNSSIFLTDTAKQIKTKVNKHAFSGGRDTIEEHRQFGGNCDVDVSFMYLTFFLEDDDKLEQIRKDYSSGAMLTGELKKELIDVLQPLVAEHQARRKEVTDEM 460          
BLAST of CX300727 vs. ExPASy Swiss-Prot
Match: SYWC_PONAB (Tryptophanyl-tRNA synthetase, cytoplasmic OS=Pongo abelii GN=WARS PE=2 SV=2)

HSP 1 Score: 113.235 bits (282), Expect = 9.362e-25
Identity = 52/106 (49.06%), Postives = 75/106 (70.75%), Query Frame = 2
Query:    2 SASDPNSALYVTDSXXXXXXXXXXYAFSGGQESVELHRKLGANLEVDIPVKYLSFFLEDDAELEHIKKEYGAGGMLTGEVKQRLAQVLTELVERHQVARAAVTDEV 319
            SASDPNS++++TD+          +AFSGG++++E HR+ G N +VD+   YL+FFLEDD +LE I+K+Y +G MLTGE+K+ L +VL  L+  HQ  R  VTDE+
Sbjct:  352 SASDPNSSIFLTDTAKQIKTKVNKHAFSGGRDTIEEHRQFGGNCDVDVSFMYLTFFLEDDDKLEQIRKDYTSGAMLTGELKKALIEVLQPLIAEHQARRKEVTDEI 457          
BLAST of CX300727 vs. ExPASy Swiss-Prot
Match: SYWC_HUMAN (Tryptophanyl-tRNA synthetase, cytoplasmic OS=Homo sapiens GN=WARS PE=1 SV=2)

HSP 1 Score: 113.235 bits (282), Expect = 9.362e-25
Identity = 52/106 (49.06%), Postives = 75/106 (70.75%), Query Frame = 2
Query:    2 SASDPNSALYVTDSXXXXXXXXXXYAFSGGQESVELHRKLGANLEVDIPVKYLSFFLEDDAELEHIKKEYGAGGMLTGEVKQRLAQVLTELVERHQVARAAVTDEV 319
            SASDPNS++++TD+          +AFSGG++++E HR+ G N +VD+   YL+FFLEDD +LE I+K+Y +G MLTGE+K+ L +VL  L+  HQ  R  VTDE+
Sbjct:  351 SASDPNSSIFLTDTAKQIKTKVNKHAFSGGRDTIEEHRQFGGNCDVDVSFMYLTFFLEDDDKLEQIRKDYTSGAMLTGELKKALIEVLQPLIAEHQARRKEVTDEI 456          
BLAST of CX300727 vs. ExPASy Swiss-Prot
Match: SYWC_BOVIN (Tryptophanyl-tRNA synthetase, cytoplasmic OS=Bos taurus GN=WARS PE=1 SV=3)

HSP 1 Score: 112.849 bits (281), Expect = 1.223e-24
Identity = 52/106 (49.06%), Postives = 75/106 (70.75%), Query Frame = 2
Query:    2 SASDPNSALYVTDSXXXXXXXXXXYAFSGGQESVELHRKLGANLEVDIPVKYLSFFLEDDAELEHIKKEYGAGGMLTGEVKQRLAQVLTELVERHQVARAAVTDEV 319
            SASDPNS++++TD+          +AFSGG+++VE HR+ G N +VD+   YL+FFLEDD +LE I+++Y +G MLTGE+K+ L +VL  L+  HQ  R  VTDE+
Sbjct:  356 SASDPNSSIFLTDTAKQIKTKVNKHAFSGGRDTVEEHRQFGGNCDVDVSFMYLTFFLEDDDKLEQIRRDYTSGAMLTGELKKELIEVLQPLIAEHQARRKEVTDEI 461          
BLAST of CX300727 vs. ExPASy Swiss-Prot
Match: SYWC_DICDI (Tryptophanyl-tRNA synthetase, cytoplasmic OS=Dictyostelium discoideum GN=trpS PE=3 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 6.943e-20
Identity = 49/106 (46.23%), Postives = 69/106 (65.09%), Query Frame = 2
Query:    2 SASDPNSALYVTDSXXXXXXXXXXYAFSGGQESVELHRKLGANLEVDIPVKYLSFFLEDDAELEHIKKEYGAGGMLTGEVKQRLAQVLTELVERHQVARAAVTDEV 319
            SASD NSA+Y++D+          +AFSGG  + E   K GA+L VDI  +YL+F LEDD +L+ I   Y  G M+TGE+KQ L  ++ +++ RH+ ARA +TDEV
Sbjct:  283 SASDTNSAVYLSDTPDQVKDKIKKHAFSGGGATKEEQEKNGADLSVDITYEYLTFMLEDDEQLKDIAHRYSTGKMMTGEIKQILIDLMNKIIIRHKEARAKITDEV 388          
BLAST of CX300727 vs. ExPASy Swiss-Prot
Match: SYW_ENCCU (Tryptophanyl-tRNA synthetase OS=Encephalitozoon cuniculi GN=ECU11_0530 PE=1 SV=2)

HSP 1 Score: 93.9745 bits (232), Expect = 5.877e-19
Identity = 43/105 (40.95%), Postives = 70/105 (66.67%), Query Frame = 2
Query:    2 SASDPNSALYVTDSXXXXXXXXXXYAFSGGQESVELHRKLGANLEVDIPVKYLSFFLEDDAELEHIKKEYGAGGMLTGEVKQRLAQVLTELVERHQVARAAVTDE 316
            SASDPNS++Y+ D+          YA+SGG++++E HR+ G +++VD+P +YL +FL+DD ELE  +  Y  G + + E+K++   V+ E V R+Q +R  VTD+
Sbjct:  270 SASDPNSSIYLDDAQDTIRKKIIAYAYSGGRKTLEEHREKGGDIDVDVPFEYLKYFLDDDQELEKYRSGYIKGEITSKEMKEKCVVVIQEFVSRYQESRKRVTDD 374          
BLAST of CX300727 vs. ExPASy Swiss-Prot
Match: SYW_SULSO (Tryptophanyl-tRNA synthetase OS=Sulfolobus solfataricus GN=trpS PE=3 SV=2)

HSP 1 Score: 90.1225 bits (222), Expect = 8.487e-18
Identity = 45/100 (45.00%), Postives = 64/100 (64.00%), Query Frame = 2
Query:    2 SASDPNSALYVTDSXXXXXXXXXXYAFSGGQESVELHRKLGANLEVDIPVKYL-SFFLEDDAELEHIKKEYGAGGMLTGEVKQRLAQVLTELVERHQVAR 298
            S+S+P +A+Y+ D           YAFSGGQ ++ELHRK G N E+D+P ++L  FF EDD  ++ I++EY +G MLTGE+KQ L   L   +E H+  R
Sbjct:  255 SSSNPETAIYLVDDPKTVERKIMKYAFSGGQPTIELHRKYGGNPEIDVPFQWLYYFFEEDDNRIKEIEEEYRSGKMLTGELKQILIDKLNNFLEEHRRRR 354          
BLAST of CX300727 vs. ExPASy Swiss-Prot
Match: SYWC_YEAST (Tryptophanyl-tRNA synthetase, cytoplasmic OS=Saccharomyces cerevisiae GN=WRS1 PE=1 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 1.891e-17
Identity = 45/105 (42.86%), Postives = 66/105 (62.86%), Query Frame = 2
Query:    2 SASDPNSALYVTDSXXXXXXXXXXYAFSGGQESVELHRKLGANLEVDIPVKYLSFFLEDDAELEHIKKEYGAGGMLTGEVKQRLAQVLTELVERHQVARAAVTDE 316
            SASD  +A+++TD+          YAFSGGQ S +LHR+LG N +VD+  +YLSFF +DD  L+    +Y +G +L+GE+K+   + L E V+  Q  RA V +E
Sbjct:  297 SASDDTTAIFMTDTPKQIQKKINKYAFSGGQVSADLHRELGGNPDVDVAYQYLSFFKDDDVFLKECYDKYKSGELLSGEMKKLCIETLQEFVKAFQERRAQVDEE 401          
The following BLAST results are available for this feature:
BLAST of CX300727 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 14
Match NameE-valueIdentityDescription
SYWC_MOUSE2.464e-2546.88Tryptophanyl-tRNA synthetase, cytoplasmic OS=Mus m... [more]
SYWC_RAT9.362e-2546.09Tryptophanyl-tRNA synthetase, cytoplasmic OS=Rattu... [more]
SYWC_RABIT9.362e-2550.00Tryptophanyl-tRNA synthetase, cytoplasmic OS=Oryct... [more]
SYWC_PONAB9.362e-2549.06Tryptophanyl-tRNA synthetase, cytoplasmic OS=Pongo... [more]
SYWC_HUMAN9.362e-2549.06Tryptophanyl-tRNA synthetase, cytoplasmic OS=Homo ... [more]
SYWC_BOVIN1.223e-2449.06Tryptophanyl-tRNA synthetase, cytoplasmic OS=Bos t... [more]
SYWC_DICDI6.943e-2046.23Tryptophanyl-tRNA synthetase, cytoplasmic OS=Dicty... [more]
SYW_ENCCU5.877e-1940.95Tryptophanyl-tRNA synthetase OS=Encephalitozoon cu... [more]
SYW_SULSO8.487e-1845.00Tryptophanyl-tRNA synthetase OS=Sulfolobus solfata... [more]
SYWC_YEAST1.891e-1742.86Tryptophanyl-tRNA synthetase, cytoplasmic OS=Sacch... [more]

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Properties
Property NameValue
Genbank descriptionC08001F01SK PhyRootSw1 Citrus sinensis cDNA clone C08001F01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX300727 ID=CX300727; Name=CX300727; organism=Citrus sinensis; type=EST; length=585bp
GTCAGCTAGTGATCCTAATTCTGCCTTATATGTTACTGATTCTGCGAAGG
CTATTAAGAACAAGATAAACAAGTATGCATTTTCTGGCGGACAAGAAAGT
GTGGAATTACATAGAAAATTAGGGGCAAATCTTGAGGTAGATATACCAGT
AAAATATCTAAGTTTTTTCCTAGAGGATGATGCAGAACTAGAACACATTA
AAAAGGAGTATGGTGCAGGTGGCATGCTAACGGGGGAAGTTAAGCAACGC
CTTGCCCAAGTTTTGACTGAATTGGTGGAAAGACACCAGGTGGCTCGTGC
TGCTGTAACTGATGAGGTAACTCTCCTGCATGCAATAACCGAAACCGAAT
GAAGCTTTTGTAAATTATGTGACATTATTGATTCGATATAGGTGCATTCA
GTCACGTCAGATTGTTAGATTTCATGGTGGATTCAATAGAAAATACCAGT
TATTAACCTCAAAAGTATTCAGTAATATGAATGCATGTTTTCAATTGTTT
GCTTCTTTCAGATGGTCGATGCATTTATGGCAGTGAGACCCCTTCCCAAT
ATGTTCGACTAGTGTTGAGATGATGAACTTGGGCG
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