CX300722

Overview
NameCX300722
Unique NameCX300722
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length607
Libraries
Library NameType
PhyRootSw1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX300722 vs. ExPASy Swiss-Prot
Match: RS2_URECA (40S ribosomal protein S2 OS=Urechis caupo GN=RPS2 PE=2 SV=1)

HSP 1 Score: 229.95 bits (585), Expect = 7.524e-60
Identity = 108/158 (68.35%), Postives = 130/158 (82.28%), Query Frame = 1
Query:    4 AGQRTRFKCYIAVGDGNGHIGLGVKCAREVATAIRGGIINAKMNLVPVRRGYWGLNAGQPHTVPCKVSGKCGSVRVRLIPAPRGSGIVASVVPKKLLNMAGIEDVYSSTTGHSRTRGNLAMAVYHALSKTYSFLTPDLWAPTHFQPTPQQEYSDLLAK 477
            AGQRTRFK ++A+GD NGH+GLGVKC++EVATAIRG II AK+++VPVRRGYWG   G+PHTVPCKV+GKCGSV VRLIPAPRG+GIV++ VPKKLL MAGI+D Y+S  G + T GN A A Y A++ TYS+LTPDLW  T F  +P QEY+D LAK
Sbjct:  104 AGQRTRFKAFVAIGDYNGHVGLGVKCSKEVATAIRGAIILAKLSVVPVRRGYWGNKIGKPHTVPCKVTGKCGSVLVRLIPAPRGTGIVSAPVPKKLLAMAGIDDCYTSARGQTATLGNFAKATYAAIAATYSYLTPDLWRETVFTKSPYQEYTDYLAK 261          
BLAST of CX300722 vs. ExPASy Swiss-Prot
Match: RS2_DROME (40S ribosomal protein S2 OS=Drosophila melanogaster GN=sop PE=1 SV=2)

HSP 1 Score: 229.18 bits (583), Expect = 1.283e-59
Identity = 108/158 (68.35%), Postives = 128/158 (81.01%), Query Frame = 1
Query:    4 AGQRTRFKCYIAVGDGNGHIGLGVKCAREVATAIRGGIINAKMNLVPVRRGYWGLNAGQPHTVPCKVSGKCGSVRVRLIPAPRGSGIVASVVPKKLLNMAGIEDVYSSTTGHSRTRGNLAMAVYHALSKTYSFLTPDLWAPTHFQPTPQQEYSDLLAK 477
            AGQRTRFK ++A+GD NGHIGLGVKC++EVATAIRG II AK+++VPVRRGYWG   G+PHTVPCKV+GKCGSV VRLIPAPRG+GIV++ VPKKLL MAGIED Y+S  G + T GN A A Y A++KTY++LTPDLW       TP Q YSD L+K
Sbjct:  101 AGQRTRFKAFVAIGDNNGHIGLGVKCSKEVATAIRGAIILAKLSVVPVRRGYWGNKIGKPHTVPCKVTGKCGSVSVRLIPAPRGTGIVSAPVPKKLLTMAGIEDCYTSARGSTGTLGNFAKATYAAIAKTYAYLTPDLWKEMPLGSTPYQAYSDFLSK 258          
BLAST of CX300722 vs. ExPASy Swiss-Prot
Match: RS23_ARATH (40S ribosomal protein S2-3 OS=Arabidopsis thaliana GN=RPS2C PE=1 SV=2)

HSP 1 Score: 228.794 bits (582), Expect = 1.676e-59
Identity = 104/160 (65.00%), Postives = 129/160 (80.62%), Query Frame = 1
Query:    4 AGQRTRFKCYIAVGDGNGHIGLGVKCAREVATAIRGGIINAKMNLVPVRRGYWGLNAGQPHTVPCKVSGKCGSVRVRLIPAPRGSGIVASVVPKKLLNMAGIEDVYSSTTGHSRTRGNLAMAVYHALSKTYSFLTPDLWAPTHFQPTPQQEYSDLLAKKA 483
            AGQRTRFK ++ VGDGNGH+GLGVKC++EVATAIRG II AK+++VPVRRGYWG   G+PHTVPCKV+GKCGSV VR++PAPRGSGIVA+ VPKK+L  AGI+DV++S+ G ++T GN   A +  L KTY FLTP+ W  T F  +P QE++D LA KA
Sbjct:  112 AGQRTRFKAFVVVGDGNGHVGLGVKCSKEVATAIRGAIILAKLSVVPVRRGYWGNKIGKPHTVPCKVTGKCGSVTVRMVPAPRGSGIVAARVPKKVLQFAGIDDVFTSSRGSTKTLGNFVKATFDCLQKTYGFLTPEFWKETRFSRSPYQEHTDFLASKA 271          
BLAST of CX300722 vs. ExPASy Swiss-Prot
Match: RS2_ICTPU (40S ribosomal protein S2 OS=Ictalurus punctatus GN=rps2 PE=2 SV=1)

HSP 1 Score: 227.639 bits (579), Expect = 3.734e-59
Identity = 106/158 (67.09%), Postives = 131/158 (82.91%), Query Frame = 1
Query:    4 AGQRTRFKCYIAVGDGNGHIGLGVKCAREVATAIRGGIINAKMNLVPVRRGYWGLNAGQPHTVPCKVSGKCGSVRVRLIPAPRGSGIVASVVPKKLLNMAGIEDVYSSTTGHSRTRGNLAMAVYHALSKTYSFLTPDLWAPTHFQPTPQQEYSDLLAK 477
            AGQRTRFK ++A+GD NGH+GLGVKC++EVATAIRG II AK++++PVRRGYWG   G+PHTVPCKV+G+CGSV VRLIPAPRG+GIV++ VPKKLL MAGI+D Y+S  G + T GN A A + A+SKTYS+LTPDLW  T F  +P QE++D LAK
Sbjct:  103 AGQRTRFKAFVAIGDYNGHVGLGVKCSKEVATAIRGAIILAKLSIIPVRRGYWGNKIGKPHTVPCKVTGRCGSVLVRLIPAPRGTGIVSAPVPKKLLMMAGIDDCYTSARGCTATLGNFAKATFDAISKTYSYLTPDLWKETVFTKSPYQEFTDHLAK 260          
BLAST of CX300722 vs. ExPASy Swiss-Prot
Match: RS22_ARATH (40S ribosomal protein S2-2 OS=Arabidopsis thaliana GN=RPS2B PE=2 SV=1)

HSP 1 Score: 227.254 bits (578), Expect = 4.877e-59
Identity = 103/160 (64.38%), Postives = 129/160 (80.62%), Query Frame = 1
Query:    4 AGQRTRFKCYIAVGDGNGHIGLGVKCAREVATAIRGGIINAKMNLVPVRRGYWGLNAGQPHTVPCKVSGKCGSVRVRLIPAPRGSGIVASVVPKKLLNMAGIEDVYSSTTGHSRTRGNLAMAVYHALSKTYSFLTPDLWAPTHFQPTPQQEYSDLLAKKA 483
            AGQRTRFK ++ VGDGNGH+GLGVKC++EVATAIRG II AK+++VPVRRGYWG   G+PHTVPCKV+GKCGSV VR++PAPRGSGIVA+ VPKK+L  AGI+DV++S+ G ++T GN   A +  L KTY FLTP+ W  T F  +P QE++D L+ KA
Sbjct:  111 AGQRTRFKAFVVVGDGNGHVGLGVKCSKEVATAIRGAIILAKLSVVPVRRGYWGNKIGKPHTVPCKVTGKCGSVTVRMVPAPRGSGIVAARVPKKVLQFAGIDDVFTSSRGSTKTLGNFVKATFDCLQKTYGFLTPEFWKETRFSRSPYQEHTDFLSTKA 270          
BLAST of CX300722 vs. ExPASy Swiss-Prot
Match: RS21_ARATH (40S ribosomal protein S2-1 OS=Arabidopsis thaliana GN=RPS2A PE=2 SV=2)

HSP 1 Score: 227.254 bits (578), Expect = 4.877e-59
Identity = 103/160 (64.38%), Postives = 129/160 (80.62%), Query Frame = 1
Query:    4 AGQRTRFKCYIAVGDGNGHIGLGVKCAREVATAIRGGIINAKMNLVPVRRGYWGLNAGQPHTVPCKVSGKCGSVRVRLIPAPRGSGIVASVVPKKLLNMAGIEDVYSSTTGHSRTRGNLAMAVYHALSKTYSFLTPDLWAPTHFQPTPQQEYSDLLAKKA 483
            AGQRTRFK ++ VGDGNGH+GLGVKC++EVATAIRG II AK+++VPVRRGYWG   G+PHTVPCKV+GKCGSV VR++PAPRGSGIVA+ VPKK+L  AGI+DV++S+ G ++T GN   A +  L KTY FLTP+ W  T F  +P QE++D L+ KA
Sbjct:  111 AGQRTRFKAFVVVGDGNGHVGLGVKCSKEVATAIRGAIILAKLSVVPVRRGYWGNKIGKPHTVPCKVTGKCGSVTVRMVPAPRGSGIVAARVPKKVLQFAGIDDVFTSSRGSTKTLGNFVKATFDCLQKTYGFLTPEFWKETRFSRSPYQEHTDFLSTKA 270          
BLAST of CX300722 vs. ExPASy Swiss-Prot
Match: RS2_RAT (40S ribosomal protein S2 OS=Rattus norvegicus GN=Rps2 PE=1 SV=1)

HSP 1 Score: 226.483 bits (576), Expect = 8.319e-59
Identity = 106/158 (67.09%), Postives = 130/158 (82.28%), Query Frame = 1
Query:    4 AGQRTRFKCYIAVGDGNGHIGLGVKCAREVATAIRGGIINAKMNLVPVRRGYWGLNAGQPHTVPCKVSGKCGSVRVRLIPAPRGSGIVASVVPKKLLNMAGIEDVYSSTTGHSRTRGNLAMAVYHALSKTYSFLTPDLWAPTHFQPTPQQEYSDLLAK 477
            AGQRTRFK ++A+GD NGH+GLGVKC++EVATAIRG II AK+++VPVRRGYWG   G+PHTVPCKV+G+CGSV VRLIPAPRG+GIV++ VPKKLL MAGI+D Y+S  G + T GN A A + A+SKTYS+LTPDLW  T F  +P QE++D L K
Sbjct:  118 AGQRTRFKAFVAIGDYNGHVGLGVKCSKEVATAIRGAIILAKLSIVPVRRGYWGNKIGKPHTVPCKVTGRCGSVLVRLIPAPRGTGIVSAPVPKKLLMMAGIDDCYTSARGCTATLGNFAKATFDAISKTYSYLTPDLWKETVFTKSPYQEFTDHLVK 275          
BLAST of CX300722 vs. ExPASy Swiss-Prot
Match: RS2_MOUSE (40S ribosomal protein S2 OS=Mus musculus GN=Rps2 PE=1 SV=3)

HSP 1 Score: 226.483 bits (576), Expect = 8.319e-59
Identity = 106/158 (67.09%), Postives = 130/158 (82.28%), Query Frame = 1
Query:    4 AGQRTRFKCYIAVGDGNGHIGLGVKCAREVATAIRGGIINAKMNLVPVRRGYWGLNAGQPHTVPCKVSGKCGSVRVRLIPAPRGSGIVASVVPKKLLNMAGIEDVYSSTTGHSRTRGNLAMAVYHALSKTYSFLTPDLWAPTHFQPTPQQEYSDLLAK 477
            AGQRTRFK ++A+GD NGH+GLGVKC++EVATAIRG II AK+++VPVRRGYWG   G+PHTVPCKV+G+CGSV VRLIPAPRG+GIV++ VPKKLL MAGI+D Y+S  G + T GN A A + A+SKTYS+LTPDLW  T F  +P QE++D L K
Sbjct:  118 AGQRTRFKAFVAIGDYNGHVGLGVKCSKEVATAIRGAIILAKLSIVPVRRGYWGNKIGKPHTVPCKVTGRCGSVLVRLIPAPRGTGIVSAPVPKKLLMMAGIDDCYTSARGCTATLGNFAKATFDAISKTYSYLTPDLWKETVFTKSPYQEFTDHLVK 275          
BLAST of CX300722 vs. ExPASy Swiss-Prot
Match: RS2_HUMAN (40S ribosomal protein S2 OS=Homo sapiens GN=RPS2 PE=1 SV=2)

HSP 1 Score: 226.483 bits (576), Expect = 8.319e-59
Identity = 106/158 (67.09%), Postives = 130/158 (82.28%), Query Frame = 1
Query:    4 AGQRTRFKCYIAVGDGNGHIGLGVKCAREVATAIRGGIINAKMNLVPVRRGYWGLNAGQPHTVPCKVSGKCGSVRVRLIPAPRGSGIVASVVPKKLLNMAGIEDVYSSTTGHSRTRGNLAMAVYHALSKTYSFLTPDLWAPTHFQPTPQQEYSDLLAK 477
            AGQRTRFK ++A+GD NGH+GLGVKC++EVATAIRG II AK+++VPVRRGYWG   G+PHTVPCKV+G+CGSV VRLIPAPRG+GIV++ VPKKLL MAGI+D Y+S  G + T GN A A + A+SKTYS+LTPDLW  T F  +P QE++D L K
Sbjct:  118 AGQRTRFKAFVAIGDYNGHVGLGVKCSKEVATAIRGAIILAKLSIVPVRRGYWGNKIGKPHTVPCKVTGRCGSVLVRLIPAPRGTGIVSAPVPKKLLMMAGIDDCYTSARGCTATLGNFAKATFDAISKTYSYLTPDLWKETVFTKSPYQEFTDHLVK 275          
BLAST of CX300722 vs. ExPASy Swiss-Prot
Match: RS2_BOVIN (40S ribosomal protein S2 OS=Bos taurus GN=RPS2 PE=2 SV=2)

HSP 1 Score: 226.483 bits (576), Expect = 8.319e-59
Identity = 106/158 (67.09%), Postives = 130/158 (82.28%), Query Frame = 1
Query:    4 AGQRTRFKCYIAVGDGNGHIGLGVKCAREVATAIRGGIINAKMNLVPVRRGYWGLNAGQPHTVPCKVSGKCGSVRVRLIPAPRGSGIVASVVPKKLLNMAGIEDVYSSTTGHSRTRGNLAMAVYHALSKTYSFLTPDLWAPTHFQPTPQQEYSDLLAK 477
            AGQRTRFK ++A+GD NGH+GLGVKC++EVATAIRG II AK+++VPVRRGYWG   G+PHTVPCKV+G+CGSV VRLIPAPRG+GIV++ VPKKLL MAGI+D Y+S  G + T GN A A + A+SKTYS+LTPDLW  T F  +P QE++D L K
Sbjct:  118 AGQRTRFKAFVAIGDYNGHVGLGVKCSKEVATAIRGAIILAKLSIVPVRRGYWGNKIGKPHTVPCKVTGRCGSVLVRLIPAPRGTGIVSAPVPKKLLMMAGIDDCYTSARGCTATLGNFAKATFDAISKTYSYLTPDLWKETVFTKSPYQEFTDHLVK 275          
The following BLAST results are available for this feature:
BLAST of CX300722 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 238
Match NameE-valueIdentityDescription
RS2_URECA7.524e-6068.3540S ribosomal protein S2 OS=Urechis caupo GN=RPS2 ... [more]
RS2_DROME1.283e-5968.3540S ribosomal protein S2 OS=Drosophila melanogaste... [more]
RS23_ARATH1.676e-5965.0040S ribosomal protein S2-3 OS=Arabidopsis thaliana... [more]
RS2_ICTPU3.734e-5967.0940S ribosomal protein S2 OS=Ictalurus punctatus GN... [more]
RS22_ARATH4.877e-5964.3840S ribosomal protein S2-2 OS=Arabidopsis thaliana... [more]
RS21_ARATH4.877e-5964.3840S ribosomal protein S2-1 OS=Arabidopsis thaliana... [more]
RS2_RAT8.319e-5967.0940S ribosomal protein S2 OS=Rattus norvegicus GN=R... [more]
RS2_MOUSE8.319e-5967.0940S ribosomal protein S2 OS=Mus musculus GN=Rps2 P... [more]
RS2_HUMAN8.319e-5967.0940S ribosomal protein S2 OS=Homo sapiens GN=RPS2 P... [more]
RS2_BOVIN8.319e-5967.0940S ribosomal protein S2 OS=Bos taurus GN=RPS2 PE=... [more]

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Properties
Property NameValue
Genbank descriptionC08001E08SK PhyRootSw1 Citrus sinensis cDNA clone C08001E08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX300722 ID=CX300722; Name=CX300722; organism=Citrus sinensis; type=EST; length=607bp
ACCGCCGGTCAACGCACCCGCTTCAAGTGCTACATCGCTGTCGGTGATGG
CAACGGCCACATTGGTTTGGGTGTCAAGTGCGCTCGTGAAGTTGCCACTG
CTATCCGTGGAGGTATCATCAACGCCAAGATGAACCTTGTTCCAGTTCGT
CGTGGTTACTGGGGTCTTAACGCCGGTCAACCACACACTGTCCCTTGCAA
GGTCTCTGGAAAGTGCGGTTCCGTCCGTGTCAGATTGATCCCTGCCCCTC
GTGGTTCTGGTATCGTCGCTTCCGTTGTCCCAAAGAAGTTATTAAACATG
GCTGGTATTGAGGACGTTTACTCTTCCACCACTGGTCACTCCCGTACCAG
AGGTAACTTGGCAATGGCTGTCTACCACGCCTTATCCAAGACTTACAGCT
TCTTAACCCCTGACTTATGGGCTCCTACCCACTTCCAACCAACTCCTCAA
CAGGAATACTCTGATTTACTTGCCAAGAAGGCCAACAAATATTAAATTAC
TTTCATAGGATTGTGAGGAGAGGATAAGCGTGACTATTCTACGGTGCGAT
GTGCCGACCTCATATGATGTAATTTAATACAACAATATTCAAAAAAAAAA
AAAAAAA
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